RNA–Protein interactions for RNA: ENST00000546298.5

YBX3-218, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 564 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-218ENST00000546298 SMTNL2Q2TAL5 461 aa9.41□□□□□ -0.9
YBX3-218ENST00000546298 SKOR2Q2VWA4 1001 aaPredicted RBP9.41□□□□□ -0.9
YBX3-218ENST00000546298 MARC1Q5VT66 337 aa9.41□□□□□ -0.9
YBX3-218ENST00000546298 LIPIQ6XZB0 460 aa9.41□□□□□ -0.9
YBX3-218ENST00000546298 ARHGAP36Q6ZRI8 547 aa9.41□□□□□ -0.9
YBX3-218ENST00000546298 RD3Q7Z3Z2 195 aa9.41□□□□□ -0.9
YBX3-218ENST00000546298 ZSWIM9Q86XI8 627 aa9.41□□□□□ -0.9
YBX3-218ENST00000546298 MAP7D3Q8IWC1 876 aa9.41□□□□□ -0.9
YBX3-218ENST00000546298 NDUFAF2Q8N183 169 aa9.41□□□□□ -0.9
YBX3-218ENST00000546298 ATPAF2Q8N5M1 289 aa9.41□□□□□ -0.9
YBX3-218ENST00000546298 OR6C4Q8NGE1 309 aa9.41□□□□□ -0.9
YBX3-218ENST00000546298 SNIP1Q8TAD8 396 aaKnown RBP9.41□□□□□ -0.9
YBX3-218ENST00000546298 WDR92Q96MX6 357 aa9.41□□□□□ -0.9
YBX3-218ENST00000546298 ZNF578Q96N58 590 aaPredicted RBP9.41□□□□□ -0.9
YBX3-218ENST00000546298 NUDCD1Q96RS6 583 aa9.41□□□□□ -0.9
YBX3-218ENST00000546298 BOCQ9BWV1 1114 aa9.41□□□□□ -0.9
YBX3-218ENST00000546298 TCEAL2Q9H3H9 227 aaPredicted RBP9.41□□□□□ -0.9
YBX3-218ENST00000546298 PCDH18Q9HCL0 1135 aa9.41□□□□□ -0.9
YBX3-218ENST00000546298 IFNKQ9P0W0 207 aa9.41□□□□□ -0.9
YBX3-218ENST00000546298 U3KQA8 63 aa9.41□□□□□ -0.9
YBX3-218ENST00000546298 URB1O60287 2271 aaKnown RBP9.41□□□□□ -0.9
YBX3-218ENST00000546298 ACACAQ13085 2346 aa9.4□□□□□ -0.9
YBX3-218ENST00000546298 KMT2BQ9UMN6 2715 aaPredicted RBP9.4□□□□□ -0.9
YBX3-218ENST00000546298 FAM208BQ5VWN6 2430 aa9.4□□□□□ -0.9
YBX3-218ENST00000546298 TNFRSF10CO14798 259 aa9.4□□□□□ -0.9
YBX3-218ENST00000546298 CBFA2T2O43439 604 aa9.4□□□□□ -0.9
YBX3-218ENST00000546298 HTRA2O43464 458 aaPredicted RBP9.4□□□□□ -0.9
YBX3-218ENST00000546298 BRINP1O60477 761 aa9.4□□□□□ -0.9
YBX3-218ENST00000546298 MAFKO60675 156 aa9.4□□□□□ -0.9
YBX3-218ENST00000546298 USP12O75317 370 aa9.4□□□□□ -0.9
YBX3-218ENST00000546298 HOXC4P09017 264 aaPredicted RBP9.4□□□□□ -0.9
YBX3-218ENST00000546298 TPM1P09493 284 aa9.4□□□□□ -0.9
YBX3-218ENST00000546298 H2AFZP0C0S5 128 aa9.4□□□□□ -0.9
YBX3-218ENST00000546298 CES1P23141 567 aa9.4□□□□□ -0.9
YBX3-218ENST00000546298 HNRNPH3P31942 346 aaKnown RBP9.4□□□□□ -0.9
YBX3-218ENST00000546298 CASP14P31944 242 aa9.4□□□□□ -0.9
YBX3-218ENST00000546298 MMP13P45452 471 aa9.4□□□□□ -0.9
YBX3-218ENST00000546298 LSSP48449 732 aa9.4□□□□□ -0.9
YBX3-218ENST00000546298 RALGDSQ12967 914 aa9.4□□□□□ -0.9
YBX3-218ENST00000546298 TRIM14Q14142 442 aa9.4□□□□□ -0.9
YBX3-218ENST00000546298 ACOX1Q15067 660 aa9.4□□□□□ -0.9
YBX3-218ENST00000546298 PDK2Q15119 407 aa9.4□□□□□ -0.9
YBX3-218ENST00000546298 ISXQ2M1V0 245 aa9.4□□□□□ -0.9
YBX3-218ENST00000546298 ALG11Q2TAA5 492 aa9.4□□□□□ -0.9
YBX3-218ENST00000546298 TBC1D25Q3MII6 688 aa9.4□□□□□ -0.9
YBX3-218ENST00000546298 GUSBP11Q6P575 273 aa9.4□□□□□ -0.9
YBX3-218ENST00000546298 RBM44Q6ZP01 1051 aaKnown RBP9.4□□□□□ -0.9
YBX3-218ENST00000546298 H2AFVQ71UI9 128 aa9.4□□□□□ -0.9
YBX3-218ENST00000546298 SLC35F3Q8IY50 421 aa9.4□□□□□ -0.9
YBX3-218ENST00000546298 ARL10Q8N8L6 244 aa9.4□□□□□ -0.9
YBX3-218ENST00000546298 OR56A4Q8NGH8 313 aa9.4□□□□□ -0.9
YBX3-218ENST00000546298 PDCD6IPQ8WUM4 868 aaKnown RBP9.4□□□□□ -0.9
YBX3-218ENST00000546298 CTNNBL1Q8WYA6 563 aaPredicted RBP9.4□□□□□ -0.9
YBX3-218ENST00000546298 TSACCQ96A04 125 aaPredicted RBP9.4□□□□□ -0.9
YBX3-218ENST00000546298 MGME1Q9BQP7 344 aa9.4□□□□□ -0.9
YBX3-218ENST00000546298 CLPBQ9H078 707 aa9.4□□□□□ -0.9
YBX3-218ENST00000546298 CAAP1Q9H8G2 361 aa9.4□□□□□ -0.9
YBX3-218ENST00000546298 POLR1BQ9H9Y6 1135 aa9.4□□□□□ -0.9
YBX3-218ENST00000546298 ZNHIT6Q9NWK9 470 aaKnown RBP9.4□□□□□ -0.9
YBX3-218ENST00000546298 CTTNBP2NLQ9P2B4 639 aa9.4□□□□□ -0.9
YBX3-218ENST00000546298 UVRAGQ9P2Y5 699 aa9.4□□□□□ -0.9
YBX3-218ENST00000546298 GULP1Q9UBP9 304 aa9.4□□□□□ -0.9
YBX3-218ENST00000546298 B4GALT6Q9UBX8 382 aa9.4□□□□□ -0.9
YBX3-218ENST00000546298 PHTF1Q9UMS5 762 aa9.4□□□□□ -0.9
YBX3-218ENST00000546298 GPR34Q9UPC5 381 aa9.4□□□□□ -0.9
YBX3-218ENST00000546298 OR1A2Q9Y585 309 aa9.4□□□□□ -0.9
YBX3-218ENST00000546298 DGKBQ9Y6T7 804 aa9.4□□□□□ -0.9
YBX3-218ENST00000546298 APC2O95996 2303 aa9.4□□□□□ -0.9
YBX3-218ENST00000546298 PLXNA2O75051 1894 aa9.4□□□□□ -0.91
YBX3-218ENST00000546298 TMX2-CTNND1H3BSU7 103 aa9.39□□□□□ -0.91
YBX3-218ENST00000546298 PSMD11O00231 422 aa9.39□□□□□ -0.91
YBX3-218ENST00000546298 TLX3O43711 291 aaPredicted RBP9.39□□□□□ -0.91
YBX3-218ENST00000546298 DXOO77932 396 aaKnown RBP9.39□□□□□ -0.91
YBX3-218ENST00000546298 PEX11BO96011 259 aa9.39□□□□□ -0.91
YBX3-218ENST00000546298 CPP00450 1065 aa9.39□□□□□ -0.91
YBX3-218ENST00000546298 GYPCP04921 128 aa9.39□□□□□ -0.91
YBX3-218ENST00000546298 KRT7P08729 469 aa9.39□□□□□ -0.91
YBX3-218ENST00000546298 TCF4P15884 667 aa9.39□□□□□ -0.91
YBX3-218ENST00000546298 CR2P20023 1033 aa9.39□□□□□ -0.91
YBX3-218ENST00000546298 TGM2P21980 687 aa9.39□□□□□ -0.91
YBX3-218ENST00000546298 RBMS1P29558 406 aaKnown RBP9.39□□□□□ -0.91
YBX3-218ENST00000546298 VIPR1P32241 457 aa9.39□□□□□ -0.91
YBX3-218ENST00000546298 TRIM23P36406 574 aa9.39□□□□□ -0.91
YBX3-218ENST00000546298 ERVPABLB-1P60509 514 aa9.39□□□□□ -0.91
YBX3-218ENST00000546298 GABREP78334 506 aa9.39□□□□□ -0.91
YBX3-218ENST00000546298 SLC25A11Q02978 314 aaKnown RBP9.39□□□□□ -0.91
YBX3-218ENST00000546298 ARHGEF7Q14155 803 aa9.39□□□□□ -0.91
YBX3-218ENST00000546298 SPIDRQ14159 915 aa9.39□□□□□ -0.91
YBX3-218ENST00000546298 ARMC12Q5T9G4 340 aa9.39□□□□□ -0.91
YBX3-218ENST00000546298 TXNRD3NBQ6F5E7 133 aa9.39□□□□□ -0.91
YBX3-218ENST00000546298 TIGD7Q6NT04 549 aaPredicted RBP9.39□□□□□ -0.91
YBX3-218ENST00000546298 PNCKQ6P2M8 343 aa9.39□□□□□ -0.91
YBX3-218ENST00000546298 USP45Q70EL2 814 aa9.39□□□□□ -0.91
YBX3-218ENST00000546298 TP53INP2Q8IXH6 220 aa9.39□□□□□ -0.91
YBX3-218ENST00000546298 KCTD6Q8NC69 237 aa9.39□□□□□ -0.91
YBX3-218ENST00000546298 ZNF248Q8NDW4 579 aa9.39□□□□□ -0.91
YBX3-218ENST00000546298 OR8K1Q8NGG5 319 aa9.39□□□□□ -0.91
YBX3-218ENST00000546298 PCDH19Q8TAB3 1148 aa9.39□□□□□ -0.91
YBX3-218ENST00000546298 ZNF564Q8TBZ8 553 aaPredicted RBP9.39□□□□□ -0.91
YBX3-218ENST00000546298 FAM71BQ8TC56 605 aa9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms