RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 SAC3D1A6NKF1 404 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 TSPAN1O60635 241 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 TMCC2O75069 709 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 GSRP00390 522 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 FCGR1AP12314 374 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 IL12AP29459 219 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 CD40LGP29965 261 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 CDKN2BP42772 138 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 GPD2P43304 727 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 THOP1P52888 689 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 MYL6P60660 151 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 YWHAGP61981 247 aaKnown RBP eCLIP5.29□□□□□ -1.56
USP28-213ENST00000544967 PHC1P78364 1004 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 OCA2Q04671 838 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 SP140Q13342 867 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 MAMLD1Q13495 774 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 MAPRE2Q15555 327 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 SLC36A3Q495N2 470 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 FNBP1LQ5T0N5 605 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 IGF2-ASQ6U949 168 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 PLEKHG7Q6ZR37 379 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 CAMK1DQ8IU85 385 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 RHPN2Q8IUC4 686 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 XXYLT1Q8NBI6 393 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 FEZF2Q8TBJ5 459 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 SEPT8Q92599 483 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 DPF3Q92784 378 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 ATP2A3Q93084 1043 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 ZNF486Q96H40 463 aaPredicted RBP5.29□□□□□ -1.56
USP28-213ENST00000544967 SLC45A3Q96JT2 553 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 FBXL18Q96ME1 805 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 ZNF778Q96MU6 729 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 ACCSQ96QU6 501 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 TMEM79Q9BSE2 394 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 NANOGQ9H9S0 305 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 DUS2Q9NX74 493 aaKnown RBP5.29□□□□□ -1.56
USP28-213ENST00000544967 FNIP2Q9P278 1114 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 SEPT9Q9UHD8 586 aaPredicted RBP5.29□□□□□ -1.56
USP28-213ENST00000544967 FAM50BQ9Y247 325 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 EIF3LQ9Y262 564 aaKnown RBP5.29□□□□□ -1.56
USP28-213ENST00000544967 TCAF1Q9Y4C2 921 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 TESMINQ9Y4I5 508 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 SAGE2PA6NJ88 616 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 NOTOA8MTQ0 251 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 MEI4A8MW99 385 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 CLIC2O15247 247 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 DEAF1O75398 565 aaPredicted RBP5.29□□□□□ -1.56
USP28-213ENST00000544967 APBB3O95704 486 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 LSM8O95777 96 aaKnown RBP5.29□□□□□ -1.56
USP28-213ENST00000544967 EOMESO95936 686 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 CHEK2O96017 543 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 EDN1P05305 212 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 TRAPPC2P0DI81 140 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 TRAPPC2BP0DI82 140 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 PKLRP30613 574 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 MAGEA3P43357 314 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 MAGEA12P43365 314 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 NSFP46459 744 aaKnown RBP5.29□□□□□ -1.56
USP28-213ENST00000544967 RAC1P63000 192 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 CTBSQ01459 385 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 BST2Q10589 180 aaKnown RBP5.29□□□□□ -1.56
USP28-213ENST00000544967 SELENBP1Q13228 472 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 SMAD4Q13485 552 aaKnown RBP5.29□□□□□ -1.56
USP28-213ENST00000544967 PPP2R5DQ14738 602 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 RAB39AQ14964 217 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 STEAP4Q687X5 459 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 TMEM214Q6NUQ4 689 aaKnown RBP5.29□□□□□ -1.56
USP28-213ENST00000544967 EFCAB12Q6NXP0 572 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 ZNF773Q6PK81 442 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 ABRAXAS1Q6UWZ7 409 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 DENND5BQ6ZUT9 1274 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 USP51Q70EK9 711 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 BEND5Q7L4P6 421 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 PRSS48Q7RTY5 328 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 RTN4RL1Q86UN2 441 aaPredicted RBP5.29□□□□□ -1.56
USP28-213ENST00000544967 GALNT13Q8IUC8 556 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 AFAP1L2Q8N4X5 818 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 TAB3Q8N5C8 712 aaPredicted RBP5.29□□□□□ -1.56
USP28-213ENST00000544967 SLC15A4Q8N697 577 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 GRPEL2Q8TAA5 225 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 RDH11Q8TC12 318 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 CLIP3Q96DZ5 547 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 SH3YL1Q96HL8 342 aaPredicted RBP5.29□□□□□ -1.56
USP28-213ENST00000544967 UBXN10Q96LJ8 280 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 TCF12Q99081 682 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 SORT1Q99523 831 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 EBF4Q9BQW3 602 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 SH2D3AQ9BRG2 576 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 TRAF4Q9BUZ4 470 aaPredicted RBP5.29□□□□□ -1.56
USP28-213ENST00000544967 ZNF518BQ9C0D4 1074 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 EFCAB1Q9HAE3 211 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 TCF7L2Q9NQB0 619 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 AASDHPPTQ9NRN7 309 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 TOPORSQ9NS56 1045 aaPredicted RBP5.29□□□□□ -1.56
USP28-213ENST00000544967 FKBP14Q9NWM8 211 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 DAPK2Q9UIK4 370 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 ADAM28Q9UKQ2 775 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 DOLKQ9UPQ8 538 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 TNFSF13BQ9Y275 285 aa5.29□□□□□ -1.56
USP28-213ENST00000544967 ATP11BQ9Y2G3 1177 aa5.29□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms