RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 ZFAND4Q86XD8 727 aa15.56■□□□□ 0.08
CLSTN3-213ENST00000541953 CCNJLQ8IV13 435 aa15.56■□□□□ 0.08
CLSTN3-213ENST00000541953 WDR48Q8TAF3 677 aa15.56■□□□□ 0.08
CLSTN3-213ENST00000541953 PTCD2Q8WV60 388 aaKnown RBP15.56■□□□□ 0.08
CLSTN3-213ENST00000541953 CASKIN2Q8WXE0 1202 aa15.56■□□□□ 0.08
CLSTN3-213ENST00000541953 EXTL1Q92935 676 aa15.56■□□□□ 0.08
CLSTN3-213ENST00000541953 PMEPA1Q969W9 287 aa15.56■□□□□ 0.08
CLSTN3-213ENST00000541953 CCDC97Q96F63 343 aaPredicted RBP15.56■□□□□ 0.08
CLSTN3-213ENST00000541953 PEBP4Q96S96 227 aa15.56■□□□□ 0.08
CLSTN3-213ENST00000541953 SLC39A8Q9C0K1 460 aa15.56■□□□□ 0.08
CLSTN3-213ENST00000541953 TMEM168Q9H0V1 697 aa15.56■□□□□ 0.08
CLSTN3-213ENST00000541953 ATP8A1Q9Y2Q0 1164 aa15.56■□□□□ 0.08
CLSTN3-213ENST00000541953 LOXL2Q9Y4K0 774 aa15.56■□□□□ 0.08
CLSTN3-213ENST00000541953 PCDHGA7Q9Y5G6 932 aa15.56■□□□□ 0.08
CLSTN3-213ENST00000541953 SDK2Q58EX2 2172 aa15.55■□□□□ 0.08
CLSTN3-213ENST00000541953 PRAMEF33A0A0G2JMD5 474 aa15.55■□□□□ 0.08
CLSTN3-213ENST00000541953 TTC24A2A3L6 582 aaPredicted RBP15.55■□□□□ 0.08
CLSTN3-213ENST00000541953 SIGLEC16A6NMB1 481 aa15.55■□□□□ 0.08
CLSTN3-213ENST00000541953 A8MX80 341 aa15.55■□□□□ 0.08
CLSTN3-213ENST00000541953 B4DGG1 531 aa15.55■□□□□ 0.08
CLSTN3-213ENST00000541953 TOR1BO14657 336 aa15.55■□□□□ 0.08
CLSTN3-213ENST00000541953 PRAMEF10O60809 474 aa15.55■□□□□ 0.08
CLSTN3-213ENST00000541953 PRAMEF11O60813 436 aa15.55■□□□□ 0.08
CLSTN3-213ENST00000541953 RECQL5O94762 991 aaPredicted RBP15.55■□□□□ 0.08
CLSTN3-213ENST00000541953 XPAP23025 273 aaPredicted RBP15.55■□□□□ 0.08
CLSTN3-213ENST00000541953 CCKBRP32239 447 aa15.55■□□□□ 0.08
CLSTN3-213ENST00000541953 MLLT3P42568 568 aaPredicted RBP15.55■□□□□ 0.08
CLSTN3-213ENST00000541953 BLKP51451 505 aa15.55■□□□□ 0.08
CLSTN3-213ENST00000541953 YBEYP58557 167 aaPredicted RBP15.55■□□□□ 0.08
CLSTN3-213ENST00000541953 CYP4F2P78329 520 aa15.55■□□□□ 0.08
CLSTN3-213ENST00000541953 ZFP36L1Q07352 338 aaKnown RBP15.55■□□□□ 0.08
CLSTN3-213ENST00000541953 MTM1Q13496 603 aa15.55■□□□□ 0.08
CLSTN3-213ENST00000541953 AGERQ15109 404 aa15.55■□□□□ 0.08
CLSTN3-213ENST00000541953 SYCP1Q15431 976 aa15.55■□□□□ 0.08
CLSTN3-213ENST00000541953 DNAJC24Q6P3W2 148 aa15.55■□□□□ 0.08
CLSTN3-213ENST00000541953 LVRNQ6Q4G3 990 aa15.55■□□□□ 0.08
CLSTN3-213ENST00000541953 TRIM72Q6ZMU5 477 aa15.55■□□□□ 0.08
CLSTN3-213ENST00000541953 SPRED1Q7Z699 444 aa15.55■□□□□ 0.08
CLSTN3-213ENST00000541953 GKN2Q86XP6 184 aa15.55■□□□□ 0.08
CLSTN3-213ENST00000541953 ARHGAP12Q8IWW6 846 aa15.55■□□□□ 0.08
CLSTN3-213ENST00000541953 ARFGAP1Q8N6T3 406 aa15.55■□□□□ 0.08
CLSTN3-213ENST00000541953 NPWQ8N729 165 aa15.55■□□□□ 0.08
CLSTN3-213ENST00000541953 NUP62CLQ9H1M0 184 aa15.55■□□□□ 0.08
CLSTN3-213ENST00000541953 TAS2R14Q9NYV8 317 aa15.55■□□□□ 0.08
CLSTN3-213ENST00000541953 EIF2AK3Q9NZJ5 1116 aaKnown RBP15.55■□□□□ 0.08
CLSTN3-213ENST00000541953 ST14Q9Y5Y6 855 aa15.55■□□□□ 0.08
CLSTN3-213ENST00000541953 DGKBQ9Y6T7 804 aa15.55■□□□□ 0.08
CLSTN3-213ENST00000541953 CAPN8A6NHC0 703 aa15.54■□□□□ 0.08
CLSTN3-213ENST00000541953 C9orf172C9J069 976 aa15.54■□□□□ 0.08
CLSTN3-213ENST00000541953 ATMINO43313 823 aaPredicted RBP15.54■□□□□ 0.08
CLSTN3-213ENST00000541953 FUCA1P04066 466 aa15.54■□□□□ 0.08
CLSTN3-213ENST00000541953 PAPOLAP51003 745 aaKnown RBP15.54■□□□□ 0.08
CLSTN3-213ENST00000541953 ARSDP51689 593 aa15.54■□□□□ 0.08
CLSTN3-213ENST00000541953 NFATC3Q12968 1075 aa15.54■□□□□ 0.08
CLSTN3-213ENST00000541953 HLTFQ14527 1009 aaKnown RBP eCLIP15.54■□□□□ 0.08
CLSTN3-213ENST00000541953 C16orf72Q14CZ0 275 aa15.54■□□□□ 0.08
CLSTN3-213ENST00000541953 PTPRRQ15256 657 aa15.54■□□□□ 0.08
CLSTN3-213ENST00000541953 OGFOD3Q6PK18 319 aa15.54■□□□□ 0.08
CLSTN3-213ENST00000541953 LIPIQ6XZB0 460 aa15.54■□□□□ 0.08
CLSTN3-213ENST00000541953 CYP4V2Q6ZWL3 525 aaPredicted RBP15.54■□□□□ 0.08
CLSTN3-213ENST00000541953 PRICKLE2Q7Z3G6 844 aa15.54■□□□□ 0.08
CLSTN3-213ENST00000541953 SRLQ86TD4 932 aa15.54■□□□□ 0.08
CLSTN3-213ENST00000541953 SLITRK4Q8IW52 837 aa15.54■□□□□ 0.08
CLSTN3-213ENST00000541953 FAM46DQ8NEK8 389 aa15.54■□□□□ 0.08
CLSTN3-213ENST00000541953 HTR3CQ8WXA8 447 aa15.54■□□□□ 0.08
CLSTN3-213ENST00000541953 ECHDC3Q96DC8 303 aa15.54■□□□□ 0.08
CLSTN3-213ENST00000541953 SEMA6CQ9H3T2 930 aa15.54■□□□□ 0.08
CLSTN3-213ENST00000541953 RDH14Q9HBH5 336 aa15.54■□□□□ 0.08
CLSTN3-213ENST00000541953 SEPT11Q9NVA2 429 aaKnown RBP15.54■□□□□ 0.08
CLSTN3-213ENST00000541953 ACSL6Q9UKU0 697 aa15.54■□□□□ 0.08
CLSTN3-213ENST00000541953 PTPN13Q12923 2485 aa15.53■□□□□ 0.08
CLSTN3-213ENST00000541953 NAV2Q8IVL1 2488 aa15.53■□□□□ 0.08
CLSTN3-213ENST00000541953 TMEM110-MUSTN1A8MSY1 372 aa15.53■□□□□ 0.08
CLSTN3-213ENST00000541953 CALB1P05937 261 aa15.53■□□□□ 0.08
CLSTN3-213ENST00000541953 ITGB6P18564 788 aa15.53■□□□□ 0.08
CLSTN3-213ENST00000541953 HTR1BP28222 390 aa15.53■□□□□ 0.08
CLSTN3-213ENST00000541953 STAT1P42224 750 aa15.53■□□□□ 0.08
CLSTN3-213ENST00000541953 COPB1P53618 953 aaKnown RBP15.53■□□□□ 0.08
CLSTN3-213ENST00000541953 MAZP56270 477 aaKnown RBP15.53■□□□□ 0.08
CLSTN3-213ENST00000541953 KIAA1024LP59773 190 aa15.53■□□□□ 0.08
CLSTN3-213ENST00000541953 TPI1P60174 286 aa15.53■□□□□ 0.08
CLSTN3-213ENST00000541953 TAF8Q7Z7C8 310 aa15.53■□□□□ 0.08
CLSTN3-213ENST00000541953 OR56A4Q8NGH8 313 aa15.53■□□□□ 0.08
CLSTN3-213ENST00000541953 ENOX1Q8TC92 643 aaKnown RBP15.53■□□□□ 0.08
CLSTN3-213ENST00000541953 HCAR2Q8TDS4 363 aa15.53■□□□□ 0.08
CLSTN3-213ENST00000541953 PATE1Q8WXA2 126 aa15.53■□□□□ 0.08
CLSTN3-213ENST00000541953 SCG3Q8WXD2 468 aaKnown RBP15.53■□□□□ 0.08
CLSTN3-213ENST00000541953 KCTD15Q96SI1 283 aaPredicted RBP15.53■□□□□ 0.08
CLSTN3-213ENST00000541953 CNPY3Q9BT09 278 aa15.53■□□□□ 0.08
CLSTN3-213ENST00000541953 TRIM7Q9C029 511 aa15.53■□□□□ 0.08
CLSTN3-213ENST00000541953 CLMPQ9H6B4 373 aa15.53■□□□□ 0.08
CLSTN3-213ENST00000541953 SUDS3Q9H7L9 328 aaPredicted RBP15.53■□□□□ 0.08
CLSTN3-213ENST00000541953 CATSPERBQ9H7T0 1116 aa15.53■□□□□ 0.08
CLSTN3-213ENST00000541953 FANCLQ9NW38 375 aa15.53■□□□□ 0.08
CLSTN3-213ENST00000541953 DACH1Q9UI36 760 aa15.53■□□□□ 0.08
CLSTN3-213ENST00000541953 APPL1Q9UKG1 709 aa15.53■□□□□ 0.08
CLSTN3-213ENST00000541953 AP4E1Q9UPM8 1137 aa15.53■□□□□ 0.08
CLSTN3-213ENST00000541953 FLNCQ14315 2725 aa15.53■□□□□ 0.08
CLSTN3-213ENST00000541953 TRAFD1O14545 582 aaPredicted RBP15.52■□□□□ 0.08
CLSTN3-213ENST00000541953 B4GAT1O43505 415 aa15.52■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms