RNA–Protein interactions for RNA: ENST00000541770.1

CLSTN3-212, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 568 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-212ENST00000541770 HS3ST2Q9Y278 367 aa8.81□□□□□ -1
CLSTN3-212ENST00000541770 ENTPD2Q9Y5L3 495 aa8.81□□□□□ -1
CLSTN3-212ENST00000541770 CAPN6Q9Y6Q1 641 aa8.81□□□□□ -1
CLSTN3-212ENST00000541770 KIF26BQ2KJY2 2108 aa8.81□□□□□ -1
CLSTN3-212ENST00000541770 KALRNO60229 2985 aa8.8□□□□□ -1
CLSTN3-212ENST00000541770 PMS2P1A4D2B8 440 aa8.8□□□□□ -1
CLSTN3-212ENST00000541770 ZSCAN5CA6NGD5 496 aaPredicted RBP8.8□□□□□ -1
CLSTN3-212ENST00000541770 RASA4BC9J798 803 aa8.8□□□□□ -1
CLSTN3-212ENST00000541770 RASA4O43374 803 aa8.8□□□□□ -1
CLSTN3-212ENST00000541770 KDELR3O43731 214 aa8.8□□□□□ -1
CLSTN3-212ENST00000541770 ATP9BO43861 1147 aa8.8□□□□□ -1
CLSTN3-212ENST00000541770 ZMPSTE24O75844 475 aa8.8□□□□□ -1
CLSTN3-212ENST00000541770 ZRANB2O95218 330 aaKnown RBP eCLIP8.8□□□□□ -1
CLSTN3-212ENST00000541770 KRT1P04264 644 aa8.8□□□□□ -1
CLSTN3-212ENST00000541770 HNRNPA2B1P22626 353 aaKnown RBP8.8□□□□□ -1
CLSTN3-212ENST00000541770 AMPD1P23109 780 aa8.8□□□□□ -1
CLSTN3-212ENST00000541770 PEX5P50542 639 aa8.8□□□□□ -1
CLSTN3-212ENST00000541770 GEMIN4P57678 1058 aaKnown RBP8.8□□□□□ -1
CLSTN3-212ENST00000541770 TAS2R38P59533 333 aa8.8□□□□□ -1
CLSTN3-212ENST00000541770 COPS2P61201 443 aa8.8□□□□□ -1
CLSTN3-212ENST00000541770 MMRN1Q13201 1228 aa8.8□□□□□ -1
CLSTN3-212ENST00000541770 CLN3Q13286 438 aa8.8□□□□□ -1
CLSTN3-212ENST00000541770 SERINC3Q13530 473 aa8.8□□□□□ -1
CLSTN3-212ENST00000541770 PAFAH1B3Q15102 231 aaKnown RBP8.8□□□□□ -1
CLSTN3-212ENST00000541770 DLG2Q15700 870 aa8.8□□□□□ -1
CLSTN3-212ENST00000541770 TAZQ16635 292 aa8.8□□□□□ -1
CLSTN3-212ENST00000541770 ODF2Q5BJF6 829 aa8.8□□□□□ -1
CLSTN3-212ENST00000541770 COLEC12Q5KU26 742 aa8.8□□□□□ -1
CLSTN3-212ENST00000541770 RETSATQ6NUM9 610 aa8.8□□□□□ -1
CLSTN3-212ENST00000541770 GUSBP11Q6P575 273 aa8.8□□□□□ -1
CLSTN3-212ENST00000541770 TMCO3Q6UWJ1 677 aa8.8□□□□□ -1
CLSTN3-212ENST00000541770 RBM44Q6ZP01 1051 aaKnown RBP8.8□□□□□ -1
CLSTN3-212ENST00000541770 Q6ZSR6 202 aa8.8□□□□□ -1
CLSTN3-212ENST00000541770 USP53Q70EK8 1073 aa8.8□□□□□ -1
CLSTN3-212ENST00000541770 LRRC49Q8IUZ0 686 aa8.8□□□□□ -1
CLSTN3-212ENST00000541770 ARHGAP12Q8IWW6 846 aa8.8□□□□□ -1
CLSTN3-212ENST00000541770 REXO1L1PQ8IX06 675 aa8.8□□□□□ -1
CLSTN3-212ENST00000541770 RCOR2Q8IZ40 523 aa8.8□□□□□ -1
CLSTN3-212ENST00000541770 EXD3Q8N9H8 876 aa8.8□□□□□ -1
CLSTN3-212ENST00000541770 TMEM145Q8NBT3 493 aa8.8□□□□□ -1
CLSTN3-212ENST00000541770 TRIM58Q8NG06 486 aa8.8□□□□□ -1
CLSTN3-212ENST00000541770 PCDH19Q8TAB3 1148 aa8.8□□□□□ -1
CLSTN3-212ENST00000541770 FRS2Q8WU20 508 aa8.8□□□□□ -1
CLSTN3-212ENST00000541770 SNRNP27Q8WVK2 155 aaKnown RBP8.8□□□□□ -1
CLSTN3-212ENST00000541770 KRT35Q92764 455 aa8.8□□□□□ -1
CLSTN3-212ENST00000541770 HES6Q96HZ4 224 aa8.8□□□□□ -1
CLSTN3-212ENST00000541770 RBM41Q96IZ5 413 aaKnown RBP8.8□□□□□ -1
CLSTN3-212ENST00000541770 RNF157Q96PX1 679 aa8.8□□□□□ -1
CLSTN3-212ENST00000541770 ALS2CR12Q96Q35 445 aa8.8□□□□□ -1
CLSTN3-212ENST00000541770 CCNL2Q96S94 520 aaPredicted RBP8.8□□□□□ -1
CLSTN3-212ENST00000541770 ATP13A1Q9HD20 1204 aa8.8□□□□□ -1
CLSTN3-212ENST00000541770 LZTFL1Q9NQ48 299 aa8.8□□□□□ -1
CLSTN3-212ENST00000541770 ETNK2Q9NVF9 386 aa8.8□□□□□ -1
CLSTN3-212ENST00000541770 IPO11Q9UI26 975 aaKnown RBP8.8□□□□□ -1
CLSTN3-212ENST00000541770 VPS51Q9UID3 782 aa8.8□□□□□ -1
CLSTN3-212ENST00000541770 HPCAL4Q9UM19 191 aa8.8□□□□□ -1
CLSTN3-212ENST00000541770 EFR3BQ9Y2G0 817 aa8.8□□□□□ -1
CLSTN3-212ENST00000541770 FARP1Q9Y4F1 1045 aaPredicted RBP8.8□□□□□ -1
CLSTN3-212ENST00000541770 MYO18BQ8IUG5 2567 aa8.8□□□□□ -1
CLSTN3-212ENST00000541770 LY6G6EA0A0G2JKS1 128 aa8.79□□□□□ -1
CLSTN3-212ENST00000541770 A0A1W2PNU3 283 aaPredicted RBP8.79□□□□□ -1
CLSTN3-212ENST00000541770 GOLGA6L9A6NEM1 432 aa8.79□□□□□ -1
CLSTN3-212ENST00000541770 ARHGAP42A6NI28 874 aa8.79□□□□□ -1
CLSTN3-212ENST00000541770 A6NNZ2 444 aa8.79□□□□□ -1
CLSTN3-212ENST00000541770 H3BM21 787 aa8.79□□□□□ -1
CLSTN3-212ENST00000541770 AGRPO00253 132 aa8.79□□□□□ -1
CLSTN3-212ENST00000541770 MCF2LO15068 1137 aa8.79□□□□□ -1
CLSTN3-212ENST00000541770 SCAMP1O15126 338 aa8.79□□□□□ -1
CLSTN3-212ENST00000541770 SNAP91O60641 907 aa8.79□□□□□ -1
CLSTN3-212ENST00000541770 FTCDO95954 541 aa8.79□□□□□ -1
CLSTN3-212ENST00000541770 TNNT1P13805 278 aa8.79□□□□□ -1
CLSTN3-212ENST00000541770 ZFXP17010 805 aaPredicted RBP8.79□□□□□ -1
CLSTN3-212ENST00000541770 PTPN7P35236 360 aa8.79□□□□□ -1
CLSTN3-212ENST00000541770 ACVRL1P37023 503 aa8.79□□□□□ -1
CLSTN3-212ENST00000541770 CDKN2BP42772 138 aa8.79□□□□□ -1
CLSTN3-212ENST00000541770 SERPINH1P50454 418 aaKnown RBP8.79□□□□□ -1
CLSTN3-212ENST00000541770 CLCN6P51797 869 aa8.79□□□□□ -1
CLSTN3-212ENST00000541770 RWDD2BP57060 319 aa8.79□□□□□ -1
CLSTN3-212ENST00000541770 HNRNPKP61978 463 aaKnown RBP eCLIP8.79□□□□□ -1
CLSTN3-212ENST00000541770 ARF5P84085 180 aa8.79□□□□□ -1
CLSTN3-212ENST00000541770 CCDC15Q0P6D6 951 aa8.79□□□□□ -1
CLSTN3-212ENST00000541770 PPP2R5EQ16537 467 aa8.79□□□□□ -1
CLSTN3-212ENST00000541770 DEFB133Q30KQ1 61 aa8.79□□□□□ -1
CLSTN3-212ENST00000541770 TFDP3Q5H9I0 405 aa8.79□□□□□ -1
CLSTN3-212ENST00000541770 PIP5KL1Q5T9C9 394 aa8.79□□□□□ -1
CLSTN3-212ENST00000541770 NCBP2-AS2Q69YL0 99 aa8.79□□□□□ -1
CLSTN3-212ENST00000541770 SLC9A4Q6AI14 798 aa8.79□□□□□ -1
CLSTN3-212ENST00000541770 ZCCHC8Q6NZY4 707 aaKnown RBP8.79□□□□□ -1
CLSTN3-212ENST00000541770 MFSD7Q6UXD7 560 aa8.79□□□□□ -1
CLSTN3-212ENST00000541770 SPOCD1Q6ZMY3 1216 aa8.79□□□□□ -1
CLSTN3-212ENST00000541770 ATG14Q6ZNE5 492 aa8.79□□□□□ -1
CLSTN3-212ENST00000541770 GCNT7Q6ZNI0 430 aa8.79□□□□□ -1
CLSTN3-212ENST00000541770 HORMAD1Q86X24 394 aa8.79□□□□□ -1
CLSTN3-212ENST00000541770 JAMLQ86YT9 394 aa8.79□□□□□ -1
CLSTN3-212ENST00000541770 SLC22A18ASQ8N1D0 253 aa8.79□□□□□ -1
CLSTN3-212ENST00000541770 SH2D3CQ8N5H7 860 aa8.79□□□□□ -1
CLSTN3-212ENST00000541770 NPWQ8N729 165 aa8.79□□□□□ -1
CLSTN3-212ENST00000541770 PQLC3Q8N755 202 aa8.79□□□□□ -1
CLSTN3-212ENST00000541770 UBL4BQ8N7F7 174 aa8.79□□□□□ -1
CLSTN3-212ENST00000541770 WDR36Q8NI36 951 aaKnown RBP8.79□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms