RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 GPR174Q9BXC1 333 aa17.61■□□□□ 0.41
CLSTN3-210ENST00000540931 MAGEE1Q9HCI5 957 aa17.61■□□□□ 0.41
CLSTN3-210ENST00000540931 PCDHGA5Q9Y5G8 931 aa17.61■□□□□ 0.41
CLSTN3-210ENST00000540931 R4GN57 208 aa17.61■□□□□ 0.41
CLSTN3-210ENST00000540931 DNAH14Q0VDD8 3507 aa17.6■□□□□ 0.41
CLSTN3-210ENST00000540931 A0A0J9YYE9 177 aa17.6■□□□□ 0.41
CLSTN3-210ENST00000540931 MED19A0JLT2 244 aaPredicted RBP17.6■□□□□ 0.41
CLSTN3-210ENST00000540931 RGSL1A5PLK6 1076 aa17.6■□□□□ 0.41
CLSTN3-210ENST00000540931 TOR1BO14657 336 aa17.6■□□□□ 0.41
CLSTN3-210ENST00000540931 HRO43593 1189 aa17.6■□□□□ 0.41
CLSTN3-210ENST00000540931 FOXD2O60548 495 aaPredicted RBP17.6■□□□□ 0.41
CLSTN3-210ENST00000540931 PMPCBO75439 489 aa17.6■□□□□ 0.41
CLSTN3-210ENST00000540931 MT-CYBP00156 380 aaPredicted RBP17.6■□□□□ 0.41
CLSTN3-210ENST00000540931 TRBC1P01850 177 aa17.6■□□□□ 0.41
CLSTN3-210ENST00000540931 KRT14P02533 472 aa17.6■□□□□ 0.41
CLSTN3-210ENST00000540931 GNSP15586 552 aa17.6■□□□□ 0.41
CLSTN3-210ENST00000540931 PSMB4P28070 264 aa17.6■□□□□ 0.41
CLSTN3-210ENST00000540931 VIPR1P32241 457 aa17.6■□□□□ 0.41
CLSTN3-210ENST00000540931 ACSL1P33121 698 aa17.6■□□□□ 0.41
CLSTN3-210ENST00000540931 GDF10P55107 478 aa17.6■□□□□ 0.41
CLSTN3-210ENST00000540931 FAM193AP78312 1265 aa17.6■□□□□ 0.41
CLSTN3-210ENST00000540931 DR1Q01658 176 aa17.6■□□□□ 0.41
CLSTN3-210ENST00000540931 DMWDQ09019 674 aa17.6■□□□□ 0.41
CLSTN3-210ENST00000540931 SEMA5AQ13591 1074 aa17.6■□□□□ 0.41
CLSTN3-210ENST00000540931 PLK5Q496M5 336 aa17.6■□□□□ 0.41
CLSTN3-210ENST00000540931 ZDHHC20Q5W0Z9 365 aa17.6■□□□□ 0.41
CLSTN3-210ENST00000540931 LAIR1Q6GTX8 287 aa17.6■□□□□ 0.41
CLSTN3-210ENST00000540931 VOPP1Q96AW1 172 aa17.6■□□□□ 0.41
CLSTN3-210ENST00000540931 ERLEC1Q96DZ1 483 aa17.6■□□□□ 0.41
CLSTN3-210ENST00000540931 ARNT2Q9HBZ2 717 aa17.6■□□□□ 0.41
CLSTN3-210ENST00000540931 PCDH12Q9NPG4 1184 aa17.6■□□□□ 0.41
CLSTN3-210ENST00000540931 RAB6BQ9NRW1 208 aa17.6■□□□□ 0.41
CLSTN3-210ENST00000540931 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP17.6■□□□□ 0.41
CLSTN3-210ENST00000540931 CHKBQ9Y259 395 aa17.6■□□□□ 0.41
CLSTN3-210ENST00000540931 GPR179Q6PRD1 2367 aa17.59■□□□□ 0.41
CLSTN3-210ENST00000540931 CAPN8A6NHC0 703 aa17.59■□□□□ 0.41
CLSTN3-210ENST00000540931 MEI4A8MW99 385 aa17.59■□□□□ 0.41
CLSTN3-210ENST00000540931 FANCGO15287 622 aa17.59■□□□□ 0.41
CLSTN3-210ENST00000540931 LATO43561 262 aa17.59■□□□□ 0.41
CLSTN3-210ENST00000540931 MAGEC1O60732 1142 aa17.59■□□□□ 0.41
CLSTN3-210ENST00000540931 PPFIA2O75334 1257 aa17.59■□□□□ 0.41
CLSTN3-210ENST00000540931 TM7SF2O76062 418 aa17.59■□□□□ 0.41
CLSTN3-210ENST00000540931 AP2A1O95782 977 aa17.59■□□□□ 0.41
CLSTN3-210ENST00000540931 PYGLP06737 847 aa17.59■□□□□ 0.41
CLSTN3-210ENST00000540931 ELFN1P0C7U0 828 aa17.59■□□□□ 0.41
CLSTN3-210ENST00000540931 DEKP35659 375 aaKnown RBP17.59■□□□□ 0.41
CLSTN3-210ENST00000540931 MMP12P39900 470 aa17.59■□□□□ 0.41
CLSTN3-210ENST00000540931 KCNJ1P48048 391 aa17.59■□□□□ 0.41
CLSTN3-210ENST00000540931 TUBB4BP68371 445 aa17.59■□□□□ 0.41
CLSTN3-210ENST00000540931 AGERQ15109 404 aa17.59■□□□□ 0.41
CLSTN3-210ENST00000540931 SLC1A5Q15758 541 aa17.59■□□□□ 0.41
CLSTN3-210ENST00000540931 POM121L1PQ3SYA9 428 aa17.59■□□□□ 0.41
CLSTN3-210ENST00000540931 DNTTIP2Q5QJE6 756 aaKnown RBP17.59■□□□□ 0.41
CLSTN3-210ENST00000540931 LYSMD4Q5XG99 296 aa17.59■□□□□ 0.41
CLSTN3-210ENST00000540931 KDELC1Q6UW63 502 aa17.59■□□□□ 0.41
CLSTN3-210ENST00000540931 KIAA2013Q8IYS2 634 aa17.59■□□□□ 0.41
CLSTN3-210ENST00000540931 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP17.59■□□□□ 0.41
CLSTN3-210ENST00000540931 BBOF1Q8ND07 529 aa17.59■□□□□ 0.41
CLSTN3-210ENST00000540931 DENND6BQ8NEG7 585 aa17.59■□□□□ 0.41
CLSTN3-210ENST00000540931 LPCAT1Q8NF37 534 aa17.59■□□□□ 0.41
CLSTN3-210ENST00000540931 IPMKQ8NFU5 416 aa17.59■□□□□ 0.41
CLSTN3-210ENST00000540931 SPATA22Q8NHS9 363 aa17.59■□□□□ 0.41
CLSTN3-210ENST00000540931 CEP76Q8TAP6 659 aa17.59■□□□□ 0.41
CLSTN3-210ENST00000540931 TRIB3Q96RU7 358 aa17.59■□□□□ 0.41
CLSTN3-210ENST00000540931 FRMD8Q9BZ67 464 aaPredicted RBP17.59■□□□□ 0.41
CLSTN3-210ENST00000540931 C10orf88Q9H8K7 445 aa17.59■□□□□ 0.41
CLSTN3-210ENST00000540931 SERGEFQ9UGK8 458 aa17.59■□□□□ 0.41
CLSTN3-210ENST00000540931 MRFAP1Q9Y605 127 aa17.59■□□□□ 0.41
CLSTN3-210ENST00000540931 FAM187AA6NFU0 413 aa17.58■□□□□ 0.4
CLSTN3-210ENST00000540931 SUN1O94901 812 aa17.58■□□□□ 0.4
CLSTN3-210ENST00000540931 PRLP01236 227 aa17.58■□□□□ 0.4
CLSTN3-210ENST00000540931 CD27P26842 260 aa17.58■□□□□ 0.4
CLSTN3-210ENST00000540931 RPL22P35268 128 aaKnown RBP17.58■□□□□ 0.4
CLSTN3-210ENST00000540931 OVGP1Q12889 678 aa17.58■□□□□ 0.4
CLSTN3-210ENST00000540931 PCSK7Q16549 785 aa17.58■□□□□ 0.4
CLSTN3-210ENST00000540931 RANBP10Q6VN20 620 aa17.58■□□□□ 0.4
CLSTN3-210ENST00000540931 PRR23BQ6ZRT6 265 aa17.58■□□□□ 0.4
CLSTN3-210ENST00000540931 DGLUCYQ7Z3D6 616 aa17.58■□□□□ 0.4
CLSTN3-210ENST00000540931 DNASE2BQ8WZ79 361 aa17.58■□□□□ 0.4
CLSTN3-210ENST00000540931 OXNAD1Q96HP4 312 aaPredicted RBP17.58■□□□□ 0.4
CLSTN3-210ENST00000540931 MRGPRX2Q96LB1 330 aa17.58■□□□□ 0.4
CLSTN3-210ENST00000540931 LENG8Q96PV6 779 aaPredicted RBP17.58■□□□□ 0.4
CLSTN3-210ENST00000540931 TBL1YQ9BQ87 522 aa17.58■□□□□ 0.4
CLSTN3-210ENST00000540931 DDX47Q9H0S4 455 aaKnown RBP17.58■□□□□ 0.4
CLSTN3-210ENST00000540931 ETNK1Q9HBU6 452 aa17.58■□□□□ 0.4
CLSTN3-210ENST00000540931 MBD1Q9UIS9 605 aaPredicted RBP17.58■□□□□ 0.4
CLSTN3-210ENST00000540931 ZBTB32Q9Y2Y4 487 aaPredicted RBP17.58■□□□□ 0.4
CLSTN3-210ENST00000540931 FANCMQ8IYD8 2048 aa17.57■□□□□ 0.4
CLSTN3-210ENST00000540931 A0A1W2PPC4 97 aa17.57■□□□□ 0.4
CLSTN3-210ENST00000540931 TTC24A2A3L6 582 aaPredicted RBP17.57■□□□□ 0.4
CLSTN3-210ENST00000540931 CTAGE15A4D2H0 777 aa17.57■□□□□ 0.4
CLSTN3-210ENST00000540931 FAM47DPA6NHR8 397 aa17.57■□□□□ 0.4
CLSTN3-210ENST00000540931 PRAMEF26H0Y7S4 382 aa17.57■□□□□ 0.4
CLSTN3-210ENST00000540931 PDHA1P08559 390 aa17.57■□□□□ 0.4
CLSTN3-210ENST00000540931 CTAGE8P0CG41 777 aa17.57■□□□□ 0.4
CLSTN3-210ENST00000540931 TPSB2P20231 275 aa17.57■□□□□ 0.4
CLSTN3-210ENST00000540931 AKT2P31751 481 aa17.57■□□□□ 0.4
CLSTN3-210ENST00000540931 TAS2R38P59533 333 aa17.57■□□□□ 0.4
CLSTN3-210ENST00000540931 BASP1P80723 227 aaKnown RBP17.57■□□□□ 0.4
CLSTN3-210ENST00000540931 CDH17Q12864 832 aa17.57■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms