RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 UBA2Q9UBT2 640 aaPredicted RBP13.84□□□□□ -0.19
RTN3-210ENST00000540798 AGO1Q9UL18 857 aaKnown RBP13.84□□□□□ -0.19
RTN3-210ENST00000540798 G3BP2Q9UN86 482 aaKnown RBP13.84□□□□□ -0.19
RTN3-210ENST00000540798 VWA7Q9Y334 891 aa13.84□□□□□ -0.19
RTN3-210ENST00000540798 ACTL7AQ9Y615 435 aa13.84□□□□□ -0.19
RTN3-210ENST00000540798 RPP40O75818 363 aaKnown RBP13.83□□□□□ -0.2
RTN3-210ENST00000540798 F11P03951 625 aa13.83□□□□□ -0.2
RTN3-210ENST00000540798 TFEBP19484 476 aa13.83□□□□□ -0.2
RTN3-210ENST00000540798 RGRP47804 291 aa13.83□□□□□ -0.2
RTN3-210ENST00000540798 SUOXP51687 545 aa13.83□□□□□ -0.2
RTN3-210ENST00000540798 CDKN2DP55273 166 aa13.83□□□□□ -0.2
RTN3-210ENST00000540798 TIAL1Q01085 375 aaKnown RBP eCLIP13.83□□□□□ -0.2
RTN3-210ENST00000540798 BTKQ06187 659 aa13.83□□□□□ -0.2
RTN3-210ENST00000540798 IKBKEQ14164 716 aa13.83□□□□□ -0.2
RTN3-210ENST00000540798 ACAP2Q15057 778 aa13.83□□□□□ -0.2
RTN3-210ENST00000540798 ADGRF1Q5T601 910 aa13.83□□□□□ -0.2
RTN3-210ENST00000540798 PIWIL4Q7Z3Z4 852 aaKnown RBP13.83□□□□□ -0.2
RTN3-210ENST00000540798 NET1Q7Z628 596 aaPredicted RBP13.83□□□□□ -0.2
RTN3-210ENST00000540798 BBS5Q8N3I7 341 aa13.83□□□□□ -0.2
RTN3-210ENST00000540798 ANKRD27Q96NW4 1050 aa13.83□□□□□ -0.2
RTN3-210ENST00000540798 TBX21Q9UL17 535 aa13.83□□□□□ -0.2
RTN3-210ENST00000540798 ARL5AQ9Y689 179 aa13.83□□□□□ -0.2
RTN3-210ENST00000540798 SEC23IPQ9Y6Y8 1000 aaKnown RBP13.83□□□□□ -0.2
RTN3-210ENST00000540798 A0A1B0GVM2 712 aa13.83□□□□□ -0.2
RTN3-210ENST00000540798 TCAF2A6NFQ2 919 aa13.83□□□□□ -0.2
RTN3-210ENST00000540798 UPP2O95045 317 aa13.83□□□□□ -0.2
RTN3-210ENST00000540798 CCL5P13501 91 aa13.83□□□□□ -0.2
RTN3-210ENST00000540798 FDXRP22570 491 aa13.83□□□□□ -0.2
RTN3-210ENST00000540798 OXCT1P55809 520 aa13.83□□□□□ -0.2
RTN3-210ENST00000540798 GALNT3Q14435 633 aa13.83□□□□□ -0.2
RTN3-210ENST00000540798 FSCBQ5H9T9 825 aa13.83□□□□□ -0.2
RTN3-210ENST00000540798 AGAP9Q5VTM2 703 aa13.83□□□□□ -0.2
RTN3-210ENST00000540798 SEL1L3Q68CR1 1132 aa13.83□□□□□ -0.2
RTN3-210ENST00000540798 CXorf57Q6NSI4 855 aaKnown RBP13.83□□□□□ -0.2
RTN3-210ENST00000540798 TMEM207Q6UWW9 146 aa13.83□□□□□ -0.2
RTN3-210ENST00000540798 SCUBE1Q8IWY4 988 aa13.83□□□□□ -0.2
RTN3-210ENST00000540798 ULK2Q8IYT8 1036 aa13.83□□□□□ -0.2
RTN3-210ENST00000540798 PHTF2Q8N3S3 785 aa13.83□□□□□ -0.2
RTN3-210ENST00000540798 CPSF7Q8N684 471 aaKnown RBP13.83□□□□□ -0.2
RTN3-210ENST00000540798 KDM1BQ8NB78 822 aa13.83□□□□□ -0.2
RTN3-210ENST00000540798 WBP2Q969T9 261 aa13.83□□□□□ -0.2
RTN3-210ENST00000540798 ZFRQ96KR1 1074 aaKnown RBP13.83□□□□□ -0.2
RTN3-210ENST00000540798 TBATAQ96M53 351 aa13.83□□□□□ -0.2
RTN3-210ENST00000540798 TCF7L2Q9NQB0 619 aa13.83□□□□□ -0.2
RTN3-210ENST00000540798 DENND4CQ5VZ89 1909 aa13.83□□□□□ -0.2
RTN3-210ENST00000540798 A0A088AWK7 358 aa13.82□□□□□ -0.2
RTN3-210ENST00000540798 OR51F1A6NGY5 319 aa13.82□□□□□ -0.2
RTN3-210ENST00000540798 ENO4A6NNW6 628 aa13.82□□□□□ -0.2
RTN3-210ENST00000540798 GFRA2O00451 464 aa13.82□□□□□ -0.2
RTN3-210ENST00000540798 SLC22A2O15244 555 aa13.82□□□□□ -0.2
RTN3-210ENST00000540798 LATS1O95835 1130 aa13.82□□□□□ -0.2
RTN3-210ENST00000540798 GOT2P00505 430 aaKnown RBP13.82□□□□□ -0.2
RTN3-210ENST00000540798 HOXB8P17481 243 aaPredicted RBP13.82□□□□□ -0.2
RTN3-210ENST00000540798 ZNF140P52738 457 aaPredicted RBP13.82□□□□□ -0.2
RTN3-210ENST00000540798 COPAP53621 1224 aa13.82□□□□□ -0.2
RTN3-210ENST00000540798 CLNS1AP54105 237 aaKnown RBP13.82□□□□□ -0.2
RTN3-210ENST00000540798 ATN1P54259 1190 aaPredicted RBP13.82□□□□□ -0.2
RTN3-210ENST00000540798 PRAMEP78395 509 aa13.82□□□□□ -0.2
RTN3-210ENST00000540798 CYTH1Q15438 398 aa13.82□□□□□ -0.2
RTN3-210ENST00000540798 TYSND1Q2T9J0 566 aa13.82□□□□□ -0.2
RTN3-210ENST00000540798 CFAP157Q5JU67 520 aa13.82□□□□□ -0.2
RTN3-210ENST00000540798 FAM45BPQ6NSW5 357 aa13.82□□□□□ -0.2
RTN3-210ENST00000540798 ZNF549Q6P9A3 640 aa13.82□□□□□ -0.2
RTN3-210ENST00000540798 TMEM150AQ86TG1 271 aa13.82□□□□□ -0.2
RTN3-210ENST00000540798 FAM45AQ8TCE6 357 aa13.82□□□□□ -0.2
RTN3-210ENST00000540798 ANKRD49Q8WVL7 239 aa13.82□□□□□ -0.2
RTN3-210ENST00000540798 TOP1MTQ969P6 601 aa13.82□□□□□ -0.2
RTN3-210ENST00000540798 CMTM5Q96DZ9 223 aa13.82□□□□□ -0.2
RTN3-210ENST00000540798 CCDC126Q96EE4 140 aa13.82□□□□□ -0.2
RTN3-210ENST00000540798 DNAJC1Q96KC8 554 aaKnown RBP13.82□□□□□ -0.2
RTN3-210ENST00000540798 CCDC28BQ9BUN5 200 aa13.82□□□□□ -0.2
RTN3-210ENST00000540798 POPDC3Q9HBV1 291 aa13.82□□□□□ -0.2
RTN3-210ENST00000540798 GKN1Q9NS71 199 aa13.82□□□□□ -0.2
RTN3-210ENST00000540798 NLE1Q9NVX2 485 aaPredicted RBP13.82□□□□□ -0.2
RTN3-210ENST00000540798 TTC36A6NLP5 189 aa13.82□□□□□ -0.2
RTN3-210ENST00000540798 CCL22O00626 93 aa13.82□□□□□ -0.2
RTN3-210ENST00000540798 PENKP01210 267 aaPredicted RBP13.82□□□□□ -0.2
RTN3-210ENST00000540798 OGNP20774 298 aaKnown RBP13.82□□□□□ -0.2
RTN3-210ENST00000540798 CES1P23141 567 aa13.82□□□□□ -0.2
RTN3-210ENST00000540798 TLE2Q04725 743 aa13.82□□□□□ -0.2
RTN3-210ENST00000540798 RAB33AQ14088 237 aa13.82□□□□□ -0.2
RTN3-210ENST00000540798 CSHL1Q14406 222 aa13.82□□□□□ -0.2
RTN3-210ENST00000540798 SEMA3AQ14563 771 aa13.82□□□□□ -0.2
RTN3-210ENST00000540798 TRIM60Q495X7 471 aa13.82□□□□□ -0.2
RTN3-210ENST00000540798 IL31Q6EBC2 164 aa13.82□□□□□ -0.2
RTN3-210ENST00000540798 ZNF783Q6ZMS7 281 aa13.82□□□□□ -0.2
RTN3-210ENST00000540798 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP13.82□□□□□ -0.2
RTN3-210ENST00000540798 OR6P1Q8NGX9 317 aa13.82□□□□□ -0.2
RTN3-210ENST00000540798 SCG3Q8WXD2 468 aaKnown RBP13.82□□□□□ -0.2
RTN3-210ENST00000540798 MAELQ96JY0 434 aaKnown RBP13.82□□□□□ -0.2
RTN3-210ENST00000540798 CINPQ9BW66 212 aaPredicted RBP13.82□□□□□ -0.2
RTN3-210ENST00000540798 NACA2Q9H009 215 aa13.82□□□□□ -0.2
RTN3-210ENST00000540798 POMKQ9H5K3 350 aa13.82□□□□□ -0.2
RTN3-210ENST00000540798 MAN1C1Q9NR34 630 aa13.82□□□□□ -0.2
RTN3-210ENST00000540798 ARIH1Q9Y4X5 557 aaPredicted RBP13.82□□□□□ -0.2
RTN3-210ENST00000540798 CCDC162PA2VCL2 907 aa13.81□□□□□ -0.2
RTN3-210ENST00000540798 C2orf78A6NCI8 922 aa13.81□□□□□ -0.2
RTN3-210ENST00000540798 CD3EAPO15446 510 aaKnown RBP13.81□□□□□ -0.2
RTN3-210ENST00000540798 INSIG1O15503 277 aa13.81□□□□□ -0.2
RTN3-210ENST00000540798 PRLP01236 227 aa13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms