RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 BORCS5Q969J3 196 aa6.69□□□□□ -1.34
USP28-202ENST00000535607 LRRC39Q96DD0 335 aa6.69□□□□□ -1.34
USP28-202ENST00000535607 SGF29Q96ES7 293 aa6.69□□□□□ -1.34
USP28-202ENST00000535607 PWWP2AQ96N64 755 aa6.69□□□□□ -1.34
USP28-202ENST00000535607 FAM111AQ96PZ2 611 aa6.69□□□□□ -1.34
USP28-202ENST00000535607 EFHD1Q9BUP0 239 aa6.69□□□□□ -1.34
USP28-202ENST00000535607 HEMGNQ9BXL5 484 aa6.69□□□□□ -1.34
USP28-202ENST00000535607 OSBPL6Q9BZF3 934 aa6.69□□□□□ -1.34
USP28-202ENST00000535607 TMEM117Q9H0C3 514 aa6.69□□□□□ -1.34
USP28-202ENST00000535607 OR10A5Q9H207 317 aa6.69□□□□□ -1.34
USP28-202ENST00000535607 CPVLQ9H3G5 476 aa6.69□□□□□ -1.34
USP28-202ENST00000535607 AASDHPPTQ9NRN7 309 aa6.69□□□□□ -1.34
USP28-202ENST00000535607 TOPORSQ9NS56 1045 aaPredicted RBP6.69□□□□□ -1.34
USP28-202ENST00000535607 DNAJC28Q9NX36 388 aa6.69□□□□□ -1.34
USP28-202ENST00000535607 RRN3Q9NYV6 651 aa6.69□□□□□ -1.34
USP28-202ENST00000535607 FTSJ1Q9UET6 329 aa6.69□□□□□ -1.34
USP28-202ENST00000535607 SLC45A1Q9Y2W3 748 aa6.69□□□□□ -1.34
USP28-202ENST00000535607 COQ4Q9Y3A0 265 aa6.69□□□□□ -1.34
USP28-202ENST00000535607 FADS3Q9Y5Q0 445 aa6.69□□□□□ -1.34
USP28-202ENST00000535607 A0A088AWK7 358 aa6.68□□□□□ -1.34
USP28-202ENST00000535607 FOXO6A8MYZ6 492 aa6.68□□□□□ -1.34
USP28-202ENST00000535607 MSH4O15457 936 aa6.68□□□□□ -1.34
USP28-202ENST00000535607 XPOTO43592 962 aaKnown RBP6.68□□□□□ -1.34
USP28-202ENST00000535607 EDIL3O43854 480 aa6.68□□□□□ -1.34
USP28-202ENST00000535607 SUPT3HO75486 399 aa6.68□□□□□ -1.34
USP28-202ENST00000535607 BAIAP3O94812 1187 aa6.68□□□□□ -1.34
USP28-202ENST00000535607 LSM8O95777 96 aaKnown RBP6.68□□□□□ -1.34
USP28-202ENST00000535607 MT-CO1P00395 513 aa6.68□□□□□ -1.34
USP28-202ENST00000535607 THRAP10827 490 aa6.68□□□□□ -1.34
USP28-202ENST00000535607 MCF2P10911 925 aa6.68□□□□□ -1.34
USP28-202ENST00000535607 UNGP13051 313 aaPredicted RBP6.68□□□□□ -1.34
USP28-202ENST00000535607 ZNF23P17027 643 aa6.68□□□□□ -1.34
USP28-202ENST00000535607 ATF7P17544 494 aaPredicted RBP6.68□□□□□ -1.34
USP28-202ENST00000535607 PSMC3P17980 439 aa6.68□□□□□ -1.34
USP28-202ENST00000535607 GLRA2P23416 452 aa6.68□□□□□ -1.34
USP28-202ENST00000535607 TBXAS1P24557 533 aaPredicted RBP6.68□□□□□ -1.34
USP28-202ENST00000535607 IGFBP6P24592 240 aaPredicted RBP6.68□□□□□ -1.34
USP28-202ENST00000535607 ADSLP30566 484 aaPredicted RBP6.68□□□□□ -1.34
USP28-202ENST00000535607 ETV4P43268 484 aa6.68□□□□□ -1.34
USP28-202ENST00000535607 AQP4P55087 323 aa6.68□□□□□ -1.34
USP28-202ENST00000535607 CYP4A11Q02928 519 aa6.68□□□□□ -1.34
USP28-202ENST00000535607 IKQ13123 557 aaPredicted RBP6.68□□□□□ -1.34
USP28-202ENST00000535607 TFDP1Q14186 410 aa6.68□□□□□ -1.34
USP28-202ENST00000535607 CHI3L2Q15782 390 aa6.68□□□□□ -1.34
USP28-202ENST00000535607 INAQ16352 499 aa6.68□□□□□ -1.34
USP28-202ENST00000535607 NDUFA5Q16718 116 aa6.68□□□□□ -1.34
USP28-202ENST00000535607 QRICH1Q2TAL8 776 aa6.68□□□□□ -1.34
USP28-202ENST00000535607 CCDC153Q494R4 210 aa6.68□□□□□ -1.34
USP28-202ENST00000535607 NADK2Q4G0N4 442 aa6.68□□□□□ -1.34
USP28-202ENST00000535607 KIAA1841Q6NSI8 718 aa6.68□□□□□ -1.34
USP28-202ENST00000535607 SPOCD1Q6ZMY3 1216 aa6.68□□□□□ -1.34
USP28-202ENST00000535607 LPCAT2Q7L5N7 544 aa6.68□□□□□ -1.34
USP28-202ENST00000535607 CXXC5Q7LFL8 322 aaKnown RBP6.68□□□□□ -1.34
USP28-202ENST00000535607 POLNQ7Z5Q5 900 aa6.68□□□□□ -1.34
USP28-202ENST00000535607 SAPCD2Q86UD0 394 aa6.68□□□□□ -1.34
USP28-202ENST00000535607 PHF13Q86YI8 300 aaPredicted RBP6.68□□□□□ -1.34
USP28-202ENST00000535607 ARID3BQ8IVW6 561 aaPredicted RBP6.68□□□□□ -1.34
USP28-202ENST00000535607 PQLC1Q8N2U9 271 aa6.68□□□□□ -1.34
USP28-202ENST00000535607 STPG3Q8N7X2 389 aa6.68□□□□□ -1.34
USP28-202ENST00000535607 FBXO36Q8NEA4 188 aa6.68□□□□□ -1.34
USP28-202ENST00000535607 TNIP2Q8NFZ5 429 aa6.68□□□□□ -1.34
USP28-202ENST00000535607 TSPAN14Q8NG11 270 aa6.68□□□□□ -1.34
USP28-202ENST00000535607 FEZF2Q8TBJ5 459 aa6.68□□□□□ -1.34
USP28-202ENST00000535607 DCUN1D1Q96GG9 259 aa6.68□□□□□ -1.34
USP28-202ENST00000535607 ZMAT2Q96NC0 199 aaKnown RBP6.68□□□□□ -1.34
USP28-202ENST00000535607 SLITRK1Q96PX8 696 aa6.68□□□□□ -1.34
USP28-202ENST00000535607 CCT7Q99832 543 aa6.68□□□□□ -1.34
USP28-202ENST00000535607 HSD17B14Q9BPX1 270 aa6.68□□□□□ -1.34
USP28-202ENST00000535607 RTKNQ9BST9 563 aa6.68□□□□□ -1.34
USP28-202ENST00000535607 TEKT3Q9BXF9 490 aa6.68□□□□□ -1.34
USP28-202ENST00000535607 ASPSCR1Q9BZE9 553 aa6.68□□□□□ -1.34
USP28-202ENST00000535607 ZNF518BQ9C0D4 1074 aa6.68□□□□□ -1.34
USP28-202ENST00000535607 UNC45AQ9H3U1 944 aa6.68□□□□□ -1.34
USP28-202ENST00000535607 RPAP3Q9H6T3 665 aaPredicted RBP6.68□□□□□ -1.34
USP28-202ENST00000535607 SMYD3Q9H7B4 428 aa6.68□□□□□ -1.34
USP28-202ENST00000535607 C10orf88Q9H8K7 445 aa6.68□□□□□ -1.34
USP28-202ENST00000535607 RMI1Q9H9A7 625 aa6.68□□□□□ -1.34
USP28-202ENST00000535607 IFT122Q9HBG6 1241 aa6.68□□□□□ -1.34
USP28-202ENST00000535607 USP29Q9HBJ7 922 aa6.68□□□□□ -1.34
USP28-202ENST00000535607 C8orf4Q9NR00 106 aa6.68□□□□□ -1.34
USP28-202ENST00000535607 UBAP1Q9NZ09 502 aa6.68□□□□□ -1.34
USP28-202ENST00000535607 ARMCX1Q9P291 453 aa6.68□□□□□ -1.34
USP28-202ENST00000535607 SLC17A7Q9P2U7 560 aa6.68□□□□□ -1.34
USP28-202ENST00000535607 XPO7Q9UIA9 1087 aaKnown RBP6.68□□□□□ -1.34
USP28-202ENST00000535607 CDH22Q9UJ99 828 aa6.68□□□□□ -1.34
USP28-202ENST00000535607 VPS28Q9UK41 221 aa6.68□□□□□ -1.34
USP28-202ENST00000535607 PTBP2Q9UKA9 531 aaKnown RBP6.68□□□□□ -1.34
USP28-202ENST00000535607 R3HDM2Q9Y2K5 976 aaKnown RBP6.68□□□□□ -1.34
USP28-202ENST00000535607 PLLPQ9Y342 182 aa6.68□□□□□ -1.34
USP28-202ENST00000535607 ZNF711Q9Y462 761 aa6.68□□□□□ -1.34
USP28-202ENST00000535607 CDY2AQ9Y6F7 541 aa6.68□□□□□ -1.34
USP28-202ENST00000535607 CDY1Q9Y6F8 540 aa6.68□□□□□ -1.34
USP28-202ENST00000535607 SDR42E2A6NKP2 422 aa6.67□□□□□ -1.34
USP28-202ENST00000535607 H0Y858 1186 aa6.67□□□□□ -1.34
USP28-202ENST00000535607 MCF2LO15068 1137 aa6.67□□□□□ -1.34
USP28-202ENST00000535607 CHADO15335 359 aa6.67□□□□□ -1.34
USP28-202ENST00000535607 PGM3O95394 542 aa6.67□□□□□ -1.34
USP28-202ENST00000535607 ZBED1O96006 694 aa6.67□□□□□ -1.34
USP28-202ENST00000535607 IFNB1P01574 187 aa6.67□□□□□ -1.34
USP28-202ENST00000535607 BPGMP07738 259 aa6.67□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms