RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 ARL8BQ9NVJ2 186 aa3.41□□□□□ -1.86
CD44-229ENST00000528672 CHCHD3Q9NX63 227 aaKnown RBP3.41□□□□□ -1.86
CD44-229ENST00000528672 PTGFRNQ9P2B2 879 aa3.41□□□□□ -1.86
CD44-229ENST00000528672 CTNNAL1Q9UBT7 734 aa3.41□□□□□ -1.86
CD44-229ENST00000528672 FBXO40Q9UH90 709 aa3.41□□□□□ -1.86
CD44-229ENST00000528672 XPO7Q9UIA9 1087 aaKnown RBP3.41□□□□□ -1.86
CD44-229ENST00000528672 PPIEQ9UNP9 301 aaKnown RBP3.41□□□□□ -1.86
CD44-229ENST00000528672 PTRH2Q9Y3E5 179 aaKnown RBP3.41□□□□□ -1.86
CD44-229ENST00000528672 EMSYQ7Z589 1322 aa3.41□□□□□ -1.86
CD44-229ENST00000528672 A0A1W2PPC1 479 aa3.4□□□□□ -1.87
CD44-229ENST00000528672 OR2A25A4D2G3 310 aa3.4□□□□□ -1.87
CD44-229ENST00000528672 WIPF3A6NGB9 483 aa3.4□□□□□ -1.87
CD44-229ENST00000528672 A8MXE2 369 aa3.4□□□□□ -1.87
CD44-229ENST00000528672 BOLA2-SMG1P6H3BVE0 249 aa3.4□□□□□ -1.87
CD44-229ENST00000528672 HS6ST1O60243 411 aa3.4□□□□□ -1.87
CD44-229ENST00000528672 SLC25A12O75746 678 aa3.4□□□□□ -1.87
CD44-229ENST00000528672 CCDC172P0C7W6 258 aa3.4□□□□□ -1.87
CD44-229ENST00000528672 ZNF853P0CG23 659 aa3.4□□□□□ -1.87
CD44-229ENST00000528672 CYP2A6P11509 494 aaPredicted RBP3.4□□□□□ -1.87
CD44-229ENST00000528672 GPD1P21695 349 aa3.4□□□□□ -1.87
CD44-229ENST00000528672 CDAP32320 146 aa3.4□□□□□ -1.87
CD44-229ENST00000528672 CAMPP49913 170 aa3.4□□□□□ -1.87
CD44-229ENST00000528672 LIG4P49917 911 aa3.4□□□□□ -1.87
CD44-229ENST00000528672 ZNF41P51814 821 aaPredicted RBP3.4□□□□□ -1.87
CD44-229ENST00000528672 PMS2P54278 862 aa3.4□□□□□ -1.87
CD44-229ENST00000528672 GALCP54803 685 aa3.4□□□□□ -1.87
CD44-229ENST00000528672 F2RL1P55085 397 aa3.4□□□□□ -1.87
CD44-229ENST00000528672 DMTNQ08495 405 aa3.4□□□□□ -1.87
CD44-229ENST00000528672 TFCP2Q12800 502 aa3.4□□□□□ -1.87
CD44-229ENST00000528672 IKQ13123 557 aaPredicted RBP3.4□□□□□ -1.87
CD44-229ENST00000528672 TRIM29Q14134 588 aa3.4□□□□□ -1.87
CD44-229ENST00000528672 FGFBP1Q14512 234 aa3.4□□□□□ -1.87
CD44-229ENST00000528672 LARS2Q15031 903 aaKnown RBP3.4□□□□□ -1.87
CD44-229ENST00000528672 PLK5Q496M5 336 aa3.4□□□□□ -1.87
CD44-229ENST00000528672 ERMARDQ5T6L9 678 aa3.4□□□□□ -1.87
CD44-229ENST00000528672 VWA5B1Q5TIE3 1220 aa3.4□□□□□ -1.87
CD44-229ENST00000528672 PRAMEF17Q5VTA0 474 aa3.4□□□□□ -1.87
CD44-229ENST00000528672 JADE1Q6IE81 842 aa3.4□□□□□ -1.87
CD44-229ENST00000528672 KRT80Q6KB66 452 aa3.4□□□□□ -1.87
CD44-229ENST00000528672 DPY19L2P1Q6NXN4 242 aa3.4□□□□□ -1.87
CD44-229ENST00000528672 FBXO42Q6P3S6 717 aa3.4□□□□□ -1.87
CD44-229ENST00000528672 CCBE1Q6UXH8 406 aaPredicted RBP3.4□□□□□ -1.87
CD44-229ENST00000528672 SERPINA13PQ6UXR4 307 aa3.4□□□□□ -1.87
CD44-229ENST00000528672 IQCA1Q86XH1 822 aa3.4□□□□□ -1.87
CD44-229ENST00000528672 RFX6Q8HWS3 928 aa3.4□□□□□ -1.87
CD44-229ENST00000528672 CEP97Q8IW35 865 aa3.4□□□□□ -1.87
CD44-229ENST00000528672 UEVLDQ8IX04 471 aa3.4□□□□□ -1.87
CD44-229ENST00000528672 KIAA2013Q8IYS2 634 aa3.4□□□□□ -1.87
CD44-229ENST00000528672 OR8H3Q8N146 312 aa3.4□□□□□ -1.87
CD44-229ENST00000528672 PAQR4Q8N4S7 273 aaPredicted RBP3.4□□□□□ -1.87
CD44-229ENST00000528672 BOLLQ8N9W6 283 aaKnown RBP3.4□□□□□ -1.87
CD44-229ENST00000528672 FAM47BQ8NA70 645 aa3.4□□□□□ -1.87
CD44-229ENST00000528672 IL17RCQ8NAC3 791 aa3.4□□□□□ -1.87
CD44-229ENST00000528672 TDRD5Q8NAT2 981 aaKnown RBP3.4□□□□□ -1.87
CD44-229ENST00000528672 GOT1L1Q8NHS2 421 aaPredicted RBP3.4□□□□□ -1.87
CD44-229ENST00000528672 SGCDQ92629 289 aa3.4□□□□□ -1.87
CD44-229ENST00000528672 KAT2AQ92830 837 aa3.4□□□□□ -1.87
CD44-229ENST00000528672 VPS33AQ96AX1 596 aa3.4□□□□□ -1.87
CD44-229ENST00000528672 RMDN1Q96DB5 314 aa3.4□□□□□ -1.87
CD44-229ENST00000528672 DAZAP1Q96EP5 407 aaKnown RBP3.4□□□□□ -1.87
CD44-229ENST00000528672 LZTS2Q9BRK4 669 aa3.4□□□□□ -1.87
CD44-229ENST00000528672 SRSF8Q9BRL6 282 aaKnown RBP3.4□□□□□ -1.87
CD44-229ENST00000528672 SCNM1Q9BWG6 230 aa3.4□□□□□ -1.87
CD44-229ENST00000528672 FRMD8Q9BZ67 464 aaPredicted RBP3.4□□□□□ -1.87
CD44-229ENST00000528672 ABCG4Q9H172 646 aa3.4□□□□□ -1.87
CD44-229ENST00000528672 VPS33BQ9H267 617 aa3.4□□□□□ -1.87
CD44-229ENST00000528672 ADARB2Q9NS39 739 aaKnown RBP3.4□□□□□ -1.87
CD44-229ENST00000528672 DECR2Q9NUI1 292 aa3.4□□□□□ -1.87
CD44-229ENST00000528672 ABCF3Q9NUQ8 709 aa3.4□□□□□ -1.87
CD44-229ENST00000528672 PLK2Q9NYY3 685 aa3.4□□□□□ -1.87
CD44-229ENST00000528672 GRHL1Q9NZI5 618 aa3.4□□□□□ -1.87
CD44-229ENST00000528672 OGFRQ9NZT2 677 aa3.4□□□□□ -1.87
CD44-229ENST00000528672 CGNQ9P2M7 1197 aaKnown RBP3.4□□□□□ -1.87
CD44-229ENST00000528672 SEL1LQ9UBV2 794 aa3.4□□□□□ -1.87
CD44-229ENST00000528672 CNOT8Q9UFF9 292 aaKnown RBP3.4□□□□□ -1.87
CD44-229ENST00000528672 GTF3C4Q9UKN8 822 aa3.4□□□□□ -1.87
CD44-229ENST00000528672 AAR2Q9Y312 384 aaKnown RBP3.4□□□□□ -1.87
CD44-229ENST00000528672 FAM96BQ9Y3D0 163 aa3.4□□□□□ -1.87
CD44-229ENST00000528672 CCL27Q9Y4X3 112 aa3.4□□□□□ -1.87
CD44-229ENST00000528672 TRPV2Q9Y5S1 764 aa3.4□□□□□ -1.87
CD44-229ENST00000528672 UTYO14607 1347 aa3.4□□□□□ -1.87
CD44-229ENST00000528672 IL16Q14005 1332 aa3.4□□□□□ -1.87
CD44-229ENST00000528672 ADGRF5Q8IZF2 1346 aa3.4□□□□□ -1.87
CD44-229ENST00000528672 PCSK5Q92824 1860 aa3.39□□□□□ -1.87
CD44-229ENST00000528672 A0A0A0MQY5 61 aa3.39□□□□□ -1.87
CD44-229ENST00000528672 SLC22A23A1A5C7 686 aa3.39□□□□□ -1.87
CD44-229ENST00000528672 CXorf65A6NEN9 183 aa3.39□□□□□ -1.87
CD44-229ENST00000528672 BTBD19C9JJ37 291 aa3.39□□□□□ -1.87
CD44-229ENST00000528672 TAF4O00268 1085 aa3.39□□□□□ -1.87
CD44-229ENST00000528672 ADAM10O14672 748 aa3.39□□□□□ -1.87
CD44-229ENST00000528672 SEC14L5O43304 696 aa3.39□□□□□ -1.87
CD44-229ENST00000528672 MSI1O43347 362 aaKnown RBP3.39□□□□□ -1.87
CD44-229ENST00000528672 NKX2-2O95096 273 aa3.39□□□□□ -1.87
CD44-229ENST00000528672 DDAH2O95865 285 aa3.39□□□□□ -1.87
CD44-229ENST00000528672 TFP02787 698 aa3.39□□□□□ -1.87
CD44-229ENST00000528672 TPM3P06753 285 aa3.39□□□□□ -1.87
CD44-229ENST00000528672 TUBBP07437 444 aa3.39□□□□□ -1.87
CD44-229ENST00000528672 ABCB1P08183 1280 aaPredicted RBP3.39□□□□□ -1.87
CD44-229ENST00000528672 SRPRAP08240 638 aaKnown RBP3.39□□□□□ -1.87
CD44-229ENST00000528672 HOXB5P09067 269 aa3.39□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms