RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 MBD3L2Q8NHZ7 208 aaPredicted RBP0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 FIBINQ8TAL6 211 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 CEP76Q8TAP6 659 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 CCDC110Q8TBZ0 833 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 MDM1Q8TC05 714 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 TBC1D15Q8TC07 691 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 KIAA1524Q8TCG1 905 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 SLC2A12Q8TD20 617 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 CCHCR1Q8TD31 782 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 BCAS4Q8TDM0 211 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 KCNG4Q8TDN1 519 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 DUSP19Q8WTR2 217 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 HMGB4Q8WW32 186 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 KCNE4Q8WWG9 221 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 OVCA2Q8WZ82 227 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 SHC3Q92529 594 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 NCSTNQ92542 709 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 WASF1Q92558 559 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 SGCDQ92629 289 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 LPAR1Q92633 364 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 ZNF75CPQ92670 426 aaPredicted RBP0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 KAT2BQ92831 832 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 SCAMP4Q969E2 229 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 PPP2R3CQ969Q6 453 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 FUBP1Q96AE4 644 aaKnown RBP0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 FKBP10Q96AY3 582 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 ZBTB9Q96C00 473 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 FAM136AQ96C01 138 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 INTS12Q96CB8 462 aaKnown RBP0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 KLHL29Q96CT2 875 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 TUBGCP3Q96CW5 907 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 HDAC11Q96DB2 347 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 TMCO6Q96DC7 493 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 ELP4Q96EB1 424 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 ARSGQ96EG1 525 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 SAT2Q96F10 170 aaPredicted RBP0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 ALG14Q96F25 216 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 CFAP36Q96G28 342 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 MASTLQ96GX5 879 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 RBM17Q96I25 401 aaKnown RBP0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 PDLIM2Q96JY6 352 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 CNDP1Q96KN2 507 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 MARK4Q96L34 752 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 CNOT6LQ96LI5 555 aaKnown RBP0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 FER1L6-AS2Q96M78 137 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 DUX3Q96PT4 197 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 FAM111AQ96PZ2 611 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 GSDMAQ96QA5 445 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 GAL3ST4Q96RP7 486 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 CTAGE1Q96RT6 745 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 FIZ1Q96SL8 496 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 RUFY1Q96T51 708 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 KCNK16Q96T55 309 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 PARK7Q99497 189 aaKnown RBP0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 NPAS1Q99742 590 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 PIP5K1AQ99755 562 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 TXN2Q99757 166 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 SH3GL2Q99962 352 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 RHOXF2Q9BQY4 288 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 MESP1Q9BRJ9 268 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 PAAF1Q9BRP4 392 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 NAA11Q9BSU3 229 aaPredicted RBP0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 CRACR2AQ9BSW2 395 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 SOX7Q9BT81 388 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 TBCDQ9BTW9 1192 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 MMTAG2Q9BU76 263 aaKnown RBP0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 POLR3CQ9BUI4 534 aaPredicted RBP0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 SLC25A23Q9BV35 468 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 MLPHQ9BV36 600 aaPredicted RBP0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 MLST8Q9BVC4 326 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 CINPQ9BW66 212 aaPredicted RBP0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 CCDC106Q9BWC9 280 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 C1orf43Q9BWL3 253 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 PHF7Q9BWX1 381 aaPredicted RBP0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 STRA6Q9BX79 667 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 C1QTNF1Q9BXJ1 281 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 HEMGNQ9BXL5 484 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 IMPG2Q9BZV3 1241 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 TM6SF1Q9BZW5 370 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 TRIM31Q9BZY9 425 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 KRT23Q9C075 422 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 KLHL4Q9C0H6 718 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 MS4A7Q9GZW8 240 aaPredicted RBP0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 USP44Q9H0E7 712 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 INTS2Q9H0H0 1204 aaKnown RBP0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 C11orf54Q9H0W9 315 aaPredicted RBP0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 SLC25A18Q9H1K4 315 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 CDT1Q9H211 546 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 SLC25A32Q9H2D1 315 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 KLK15Q9H2R5 256 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 HIPK2Q9H2X6 1198 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 MMP27Q9H306 513 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 CLSTN2Q9H4D0 955 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 MROH8Q9H579 483 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 STN1Q9H668 368 aaKnown RBP0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 DENND2DQ9H6A0 471 aaPredicted RBP0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 CCDC134Q9H6E4 229 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 PLEKHA2Q9HB19 425 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 IL21RQ9HBE5 538 aa0.6□□□□□ -2.31
RNU4-54P-201ENST00000516428 GPR35Q9HC97 309 aa0.6□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms