RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 TTC7AQ9ULT0 858 aaPredicted RBP14.34□□□□□ -0.11
NUP54-216ENST00000514901 CHKBQ9Y259 395 aa14.34□□□□□ -0.11
NUP54-216ENST00000514901 ITM2BQ9Y287 266 aa14.34□□□□□ -0.11
NUP54-216ENST00000514901 R3HDM2Q9Y2K5 976 aaKnown RBP14.34□□□□□ -0.11
NUP54-216ENST00000514901 CABIN1Q9Y6J0 2220 aa14.34□□□□□ -0.11
NUP54-216ENST00000514901 PATE3B3GLJ2 98 aa14.33□□□□□ -0.12
NUP54-216ENST00000514901 ANKRD66B4E2M5 251 aa14.33□□□□□ -0.12
NUP54-216ENST00000514901 CES2O00748 559 aa14.33□□□□□ -0.12
NUP54-216ENST00000514901 ARHGAP33O14559 1287 aa14.33□□□□□ -0.12
NUP54-216ENST00000514901 VILLO15195 856 aa14.33□□□□□ -0.12
NUP54-216ENST00000514901 LIASO43766 372 aa14.33□□□□□ -0.12
NUP54-216ENST00000514901 LZTS3O60299 673 aaPredicted RBP14.33□□□□□ -0.12
NUP54-216ENST00000514901 MMP20O60882 483 aa14.33□□□□□ -0.12
NUP54-216ENST00000514901 ANXA9O76027 345 aa14.33□□□□□ -0.12
NUP54-216ENST00000514901 PRLP01236 227 aa14.33□□□□□ -0.12
NUP54-216ENST00000514901 PDHA1P08559 390 aa14.33□□□□□ -0.12
NUP54-216ENST00000514901 ITIH2P19823 946 aa14.33□□□□□ -0.12
NUP54-216ENST00000514901 HOXD11P31277 338 aaPredicted RBP14.33□□□□□ -0.12
NUP54-216ENST00000514901 VIPR1P32241 457 aa14.33□□□□□ -0.12
NUP54-216ENST00000514901 CXCR5P32302 372 aa14.33□□□□□ -0.12
NUP54-216ENST00000514901 LIG3P49916 1009 aa14.33□□□□□ -0.12
NUP54-216ENST00000514901 ARHGAP8P85298 464 aa14.33□□□□□ -0.12
NUP54-216ENST00000514901 CDK18Q07002 472 aa14.33□□□□□ -0.12
NUP54-216ENST00000514901 MPP3Q13368 585 aa14.33□□□□□ -0.12
NUP54-216ENST00000514901 PRPSAP1Q14558 356 aa14.33□□□□□ -0.12
NUP54-216ENST00000514901 IHHQ14623 411 aa14.33□□□□□ -0.12
NUP54-216ENST00000514901 AGERQ15109 404 aa14.33□□□□□ -0.12
NUP54-216ENST00000514901 SF3A2Q15428 464 aaKnown RBP14.33□□□□□ -0.12
NUP54-216ENST00000514901 LONRF2Q1L5Z9 754 aa14.33□□□□□ -0.12
NUP54-216ENST00000514901 AASDHQ4L235 1098 aaPredicted RBP14.33□□□□□ -0.12
NUP54-216ENST00000514901 ANKRD20A2Q5SQ80 823 aa14.33□□□□□ -0.12
NUP54-216ENST00000514901 ANKRD20A1Q5TYW2 823 aa14.33□□□□□ -0.12
NUP54-216ENST00000514901 ANKRD20A3Q5VUR7 823 aa14.33□□□□□ -0.12
NUP54-216ENST00000514901 DRICH1Q6PGQ1 229 aaPredicted RBP14.33□□□□□ -0.12
NUP54-216ENST00000514901 ADAT2Q7Z6V5 191 aaKnown RBP14.33□□□□□ -0.12
NUP54-216ENST00000514901 RAVER1Q8IY67 606 aaKnown RBP14.33□□□□□ -0.12
NUP54-216ENST00000514901 RASGEF1CQ8N431 466 aa14.33□□□□□ -0.12
NUP54-216ENST00000514901 TMEM145Q8NBT3 493 aa14.33□□□□□ -0.12
NUP54-216ENST00000514901 KLK6Q92876 244 aa14.33□□□□□ -0.12
NUP54-216ENST00000514901 IFT43Q96FT9 208 aa14.33□□□□□ -0.12
NUP54-216ENST00000514901 SLC6A18Q96N87 628 aa14.33□□□□□ -0.12
NUP54-216ENST00000514901 WRAP53Q9BUR4 548 aaKnown RBP14.33□□□□□ -0.12
NUP54-216ENST00000514901 GBA3Q9H227 469 aa14.33□□□□□ -0.12
NUP54-216ENST00000514901 SMOC1Q9H4F8 434 aa14.33□□□□□ -0.12
NUP54-216ENST00000514901 C10orf88Q9H8K7 445 aa14.33□□□□□ -0.12
NUP54-216ENST00000514901 B4GALT6Q9UBX8 382 aa14.33□□□□□ -0.12
NUP54-216ENST00000514901 RSPH14Q9UHP6 348 aa14.33□□□□□ -0.12
NUP54-216ENST00000514901 DRG1Q9Y295 367 aaKnown RBP14.33□□□□□ -0.12
NUP54-216ENST00000514901 AAR2Q9Y312 384 aaKnown RBP14.33□□□□□ -0.12
NUP54-216ENST00000514901 A0A0J9YYE9 177 aa14.32□□□□□ -0.12
NUP54-216ENST00000514901 PSMD11O00231 422 aa14.32□□□□□ -0.12
NUP54-216ENST00000514901 TOR1BO14657 336 aa14.32□□□□□ -0.12
NUP54-216ENST00000514901 GCATO75600 419 aa14.32□□□□□ -0.12
NUP54-216ENST00000514901 MT-CYBP00156 380 aaPredicted RBP14.32□□□□□ -0.12
NUP54-216ENST00000514901 TRBC1P01850 177 aa14.32□□□□□ -0.12
NUP54-216ENST00000514901 ATP1A1P05023 1023 aaKnown RBP14.32□□□□□ -0.12
NUP54-216ENST00000514901 PRKCGP05129 697 aa14.32□□□□□ -0.12
NUP54-216ENST00000514901 ELFN1P0C7U0 828 aa14.32□□□□□ -0.12
NUP54-216ENST00000514901 PRLRP16471 622 aa14.32□□□□□ -0.12
NUP54-216ENST00000514901 ZNF30P17039 623 aa14.32□□□□□ -0.12
NUP54-216ENST00000514901 TCP1P17987 556 aaKnown RBP14.32□□□□□ -0.12
NUP54-216ENST00000514901 NFKB1P19838 968 aa14.32□□□□□ -0.12
NUP54-216ENST00000514901 CSNK1EP49674 416 aaKnown RBP14.32□□□□□ -0.12
NUP54-216ENST00000514901 ATXN3P54252 364 aaPredicted RBP14.32□□□□□ -0.12
NUP54-216ENST00000514901 GEMP55040 296 aa14.32□□□□□ -0.12
NUP54-216ENST00000514901 C21orf59P57076 290 aa14.32□□□□□ -0.12
NUP54-216ENST00000514901 RALGDSQ12967 914 aa14.32□□□□□ -0.12
NUP54-216ENST00000514901 ARHGEF7Q14155 803 aa14.32□□□□□ -0.12
NUP54-216ENST00000514901 FGL2Q14314 439 aa14.32□□□□□ -0.12
NUP54-216ENST00000514901 OASLQ15646 514 aaKnown RBP14.32□□□□□ -0.12
NUP54-216ENST00000514901 LIPIQ6XZB0 460 aa14.32□□□□□ -0.12
NUP54-216ENST00000514901 DCP2Q8IU60 420 aaKnown RBP14.32□□□□□ -0.12
NUP54-216ENST00000514901 KIAA2013Q8IYS2 634 aa14.32□□□□□ -0.12
NUP54-216ENST00000514901 FAM71DQ8N9W8 422 aa14.32□□□□□ -0.12
NUP54-216ENST00000514901 SPATA22Q8NHS9 363 aa14.32□□□□□ -0.12
NUP54-216ENST00000514901 LRRC45Q96CN5 670 aa14.32□□□□□ -0.12
NUP54-216ENST00000514901 RTP4Q96DX8 246 aa14.32□□□□□ -0.12
NUP54-216ENST00000514901 LYSMD1Q96S90 227 aa14.32□□□□□ -0.12
NUP54-216ENST00000514901 OSBPL9Q96SU4 736 aa14.32□□□□□ -0.12
NUP54-216ENST00000514901 TMEM121Q9BTD3 319 aa14.32□□□□□ -0.12
NUP54-216ENST00000514901 MLPHQ9BV36 600 aaPredicted RBP14.32□□□□□ -0.12
NUP54-216ENST00000514901 SNX12Q9UMY4 172 aa14.32□□□□□ -0.12
NUP54-216ENST00000514901 ZNF148Q9UQR1 794 aa14.32□□□□□ -0.12
NUP54-216ENST00000514901 LAMA1P25391 3075 aa14.32□□□□□ -0.12
NUP54-216ENST00000514901 A0A1W2PR77 199 aa14.31□□□□□ -0.12
NUP54-216ENST00000514901 LNP1A1A4G5 178 aa14.31□□□□□ -0.12
NUP54-216ENST00000514901 GOLGA6CA6NDK9 693 aa14.31□□□□□ -0.12
NUP54-216ENST00000514901 GOLGA6BA6NDN3 693 aa14.31□□□□□ -0.12
NUP54-216ENST00000514901 TLR4O00206 839 aa14.31□□□□□ -0.12
NUP54-216ENST00000514901 FPGTO14772 594 aa14.31□□□□□ -0.12
NUP54-216ENST00000514901 DFNA5O60443 496 aa14.31□□□□□ -0.12
NUP54-216ENST00000514901 PMPCBO75439 489 aa14.31□□□□□ -0.12
NUP54-216ENST00000514901 HEXIM1O94992 359 aaKnown RBP14.31□□□□□ -0.12
NUP54-216ENST00000514901 NDST3O95803 873 aa14.31□□□□□ -0.12
NUP54-216ENST00000514901 ITGAVP06756 1048 aa14.31□□□□□ -0.12
NUP54-216ENST00000514901 GOLGA6DP0CG33 693 aa14.31□□□□□ -0.12
NUP54-216ENST00000514901 C6P13671 934 aa14.31□□□□□ -0.12
NUP54-216ENST00000514901 ENGP17813 658 aa14.31□□□□□ -0.12
NUP54-216ENST00000514901 SDHBP21912 280 aa14.31□□□□□ -0.12
NUP54-216ENST00000514901 ACTN2P35609 894 aa14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms