RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 PLEKHM3Q6ZWE6 761 aa12.73□□□□□ -0.37
USP53-209ENST00000514665 ITIH5Q86UX2 942 aa12.73□□□□□ -0.37
USP53-209ENST00000514665 ADHFE1Q8IWW8 467 aa12.73□□□□□ -0.37
USP53-209ENST00000514665 TERB1Q8NA31 727 aa12.73□□□□□ -0.37
USP53-209ENST00000514665 OR4K2Q8NGD2 314 aa12.73□□□□□ -0.37
USP53-209ENST00000514665 MCRS1Q96EZ8 462 aa12.73□□□□□ -0.37
USP53-209ENST00000514665 APOL4Q9BPW4 351 aa12.73□□□□□ -0.37
USP53-209ENST00000514665 AGO1Q9UL18 857 aaKnown RBP12.73□□□□□ -0.37
USP53-209ENST00000514665 DERAQ9Y315 318 aa12.73□□□□□ -0.37
USP53-209ENST00000514665 LOC100506127A0A0U1RQW1 187 aa12.72□□□□□ -0.37
USP53-209ENST00000514665 SMIM35A0A1B0GVV1 85 aa12.72□□□□□ -0.37
USP53-209ENST00000514665 CXorf49A8MYA2 514 aaPredicted RBP12.72□□□□□ -0.37
USP53-209ENST00000514665 H0YGN5 161 aa12.72□□□□□ -0.37
USP53-209ENST00000514665 IPO13O94829 963 aaKnown RBP12.72□□□□□ -0.37
USP53-209ENST00000514665 PCDH8O95206 1070 aa12.72□□□□□ -0.37
USP53-209ENST00000514665 LRATO95237 230 aa12.72□□□□□ -0.37
USP53-209ENST00000514665 CKBP12277 381 aa12.72□□□□□ -0.37
USP53-209ENST00000514665 VCLP18206 1134 aa12.72□□□□□ -0.37
USP53-209ENST00000514665 PEX2P28328 305 aa12.72□□□□□ -0.37
USP53-209ENST00000514665 SOX6P35712 828 aa12.72□□□□□ -0.37
USP53-209ENST00000514665 TAS2R39P59534 338 aa12.72□□□□□ -0.37
USP53-209ENST00000514665 DUSP4Q13115 394 aa12.72□□□□□ -0.37
USP53-209ENST00000514665 ITGADQ13349 1161 aa12.72□□□□□ -0.37
USP53-209ENST00000514665 FAM187BQ17R55 369 aa12.72□□□□□ -0.37
USP53-209ENST00000514665 AP5B1Q2VPB7 878 aa12.72□□□□□ -0.37
USP53-209ENST00000514665 TTC23Q5W5X9 447 aa12.72□□□□□ -0.37
USP53-209ENST00000514665 TRAF7Q6Q0C0 670 aa12.72□□□□□ -0.37
USP53-209ENST00000514665 PARP8Q8N3A8 854 aa12.72□□□□□ -0.37
USP53-209ENST00000514665 SETD9Q8NE22 299 aa12.72□□□□□ -0.37
USP53-209ENST00000514665 MAGEC3Q8TD91 643 aa12.72□□□□□ -0.37
USP53-209ENST00000514665 UCMAQ8WVF2 138 aa12.72□□□□□ -0.37
USP53-209ENST00000514665 C10orf82Q8WW14 230 aa12.72□□□□□ -0.37
USP53-209ENST00000514665 PCED1BQ96HM7 432 aa12.72□□□□□ -0.37
USP53-209ENST00000514665 ZDHHC6Q9H6R6 413 aa12.72□□□□□ -0.37
USP53-209ENST00000514665 REEP1Q9H902 201 aa12.72□□□□□ -0.37
USP53-209ENST00000514665 NFS1Q9Y697 457 aa12.72□□□□□ -0.37
USP53-209ENST00000514665 KNL1Q8NG31 2342 aa12.72□□□□□ -0.37
USP53-209ENST00000514665 FAM149AA5PLN7 773 aa12.72□□□□□ -0.37
USP53-209ENST00000514665 MAGEC1O60732 1142 aa12.72□□□□□ -0.37
USP53-209ENST00000514665 LYNP07948 512 aa12.72□□□□□ -0.37
USP53-209ENST00000514665 TKTP29401 623 aaKnown RBP12.72□□□□□ -0.37
USP53-209ENST00000514665 DSC2Q02487 901 aa12.72□□□□□ -0.37
USP53-209ENST00000514665 ACOX1Q15067 660 aa12.72□□□□□ -0.37
USP53-209ENST00000514665 MSS51Q4VC12 460 aa12.72□□□□□ -0.37
USP53-209ENST00000514665 HECTD2Q5U5R9 776 aa12.72□□□□□ -0.37
USP53-209ENST00000514665 GPR107Q5VW38 600 aa12.72□□□□□ -0.37
USP53-209ENST00000514665 TRAPPC5Q8IUR0 188 aa12.72□□□□□ -0.37
USP53-209ENST00000514665 LPGAT1Q92604 370 aa12.72□□□□□ -0.37
USP53-209ENST00000514665 TCF12Q99081 682 aa12.72□□□□□ -0.37
USP53-209ENST00000514665 TMEM106CQ9BVX2 250 aa12.72□□□□□ -0.37
USP53-209ENST00000514665 SLC7A5P2Q9GIP4 190 aa12.72□□□□□ -0.37
USP53-209ENST00000514665 SLC12A4Q9UP95 1085 aa12.72□□□□□ -0.37
USP53-209ENST00000514665 DOLKQ9UPQ8 538 aa12.72□□□□□ -0.37
USP53-209ENST00000514665 GIT1Q9Y2X7 761 aa12.72□□□□□ -0.37
USP53-209ENST00000514665 U3KQV3 271 aa12.72□□□□□ -0.37
USP53-209ENST00000514665 MYH8P13535 1937 aa12.72□□□□□ -0.37
USP53-209ENST00000514665 AHCYL1O43865 530 aa12.72□□□□□ -0.37
USP53-209ENST00000514665 KRT75O95678 551 aa12.72□□□□□ -0.37
USP53-209ENST00000514665 FGF1P05230 155 aa12.72□□□□□ -0.37
USP53-209ENST00000514665 PTPN3P26045 913 aa12.72□□□□□ -0.37
USP53-209ENST00000514665 KLRC2P26717 231 aa12.72□□□□□ -0.37
USP53-209ENST00000514665 TARBP2Q15633 366 aaKnown RBP12.72□□□□□ -0.37
USP53-209ENST00000514665 AFTPHQ6ULP2 937 aa12.72□□□□□ -0.37
USP53-209ENST00000514665 FSTL5Q8N475 847 aaPredicted RBP12.72□□□□□ -0.37
USP53-209ENST00000514665 NACC2Q96BF6 587 aa12.72□□□□□ -0.37
USP53-209ENST00000514665 TEKT5Q96M29 485 aa12.72□□□□□ -0.37
USP53-209ENST00000514665 ARMC7Q9H6L4 198 aa12.72□□□□□ -0.37
USP53-209ENST00000514665 DUOX1Q9NRD9 1551 aa12.72□□□□□ -0.37
USP53-209ENST00000514665 EPN2O95208 641 aa12.71□□□□□ -0.37
USP53-209ENST00000514665 CATP04040 527 aaKnown RBP12.71□□□□□ -0.37
USP53-209ENST00000514665 MC4RP32245 332 aa12.71□□□□□ -0.37
USP53-209ENST00000514665 CHRNA4P43681 627 aa12.71□□□□□ -0.37
USP53-209ENST00000514665 CCL23P55773 120 aa12.71□□□□□ -0.37
USP53-209ENST00000514665 BLMHQ13867 455 aa12.71□□□□□ -0.37
USP53-209ENST00000514665 LSM12Q3MHD2 195 aaKnown RBP12.71□□□□□ -0.37
USP53-209ENST00000514665 FAM151BQ6UXP7 276 aa12.71□□□□□ -0.37
USP53-209ENST00000514665 TAC4Q86UU9 113 aa12.71□□□□□ -0.37
USP53-209ENST00000514665 TRIM48Q8IWZ4 208 aa12.71□□□□□ -0.37
USP53-209ENST00000514665 SFRP1Q8N474 314 aa12.71□□□□□ -0.37
USP53-209ENST00000514665 SLCO2A1Q92959 643 aa12.71□□□□□ -0.37
USP53-209ENST00000514665 SSU72Q9NP77 194 aaKnown RBP12.71□□□□□ -0.37
USP53-209ENST00000514665 ADPRHL2Q9NX46 363 aa12.71□□□□□ -0.37
USP53-209ENST00000514665 GNEQ9Y223 722 aaKnown RBP12.71□□□□□ -0.37
USP53-209ENST00000514665 KCPQ6ZWJ8 1503 aa12.71□□□□□ -0.37
USP53-209ENST00000514665 NEMP2A6NFY4 417 aa12.71□□□□□ -0.37
USP53-209ENST00000514665 NCF4Q15080 339 aa12.71□□□□□ -0.37
USP53-209ENST00000514665 PLCL1Q15111 1095 aa12.71□□□□□ -0.37
USP53-209ENST00000514665 SOWAHAQ2M3V2 549 aa12.71□□□□□ -0.37
USP53-209ENST00000514665 VPS26BQ4G0F5 336 aa12.71□□□□□ -0.37
USP53-209ENST00000514665 METTL21CQ5VZV1 264 aa12.71□□□□□ -0.37
USP53-209ENST00000514665 DOK6Q6PKX4 331 aa12.71□□□□□ -0.37
USP53-209ENST00000514665 CLHC1Q8NHS4 586 aa12.71□□□□□ -0.37
USP53-209ENST00000514665 SF3B1O75533 1304 aaKnown RBP eCLIP12.71□□□□□ -0.37
USP53-209ENST00000514665 BTBD19C9JJ37 291 aa12.71□□□□□ -0.38
USP53-209ENST00000514665 TBL1XO60907 577 aa12.71□□□□□ -0.38
USP53-209ENST00000514665 ANXA6P08133 673 aa12.71□□□□□ -0.38
USP53-209ENST00000514665 OR1D2P34982 312 aa12.71□□□□□ -0.38
USP53-209ENST00000514665 GRK3P35626 688 aa12.71□□□□□ -0.38
USP53-209ENST00000514665 POLD2P49005 469 aa12.71□□□□□ -0.38
USP53-209ENST00000514665 SLC5A3P53794 718 aa12.71□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms