RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 CNSTQ6PJW8 725 aa12.04□□□□□ -0.48
NUP54-202ENST00000502850 FRMD7Q6ZUT3 714 aa12.04□□□□□ -0.48
NUP54-202ENST00000502850 KDELC2Q7Z4H8 507 aa12.04□□□□□ -0.48
NUP54-202ENST00000502850 SDCCAG8Q86SQ7 713 aaPredicted RBP12.04□□□□□ -0.48
NUP54-202ENST00000502850 MFN1Q8IWA4 741 aa12.04□□□□□ -0.48
NUP54-202ENST00000502850 MFSD6LQ8IWD5 586 aa12.04□□□□□ -0.48
NUP54-202ENST00000502850 LRRC43Q8N309 656 aa12.04□□□□□ -0.48
NUP54-202ENST00000502850 PHTF2Q8N3S3 785 aa12.04□□□□□ -0.48
NUP54-202ENST00000502850 CEP70Q8NHQ1 597 aa12.04□□□□□ -0.48
NUP54-202ENST00000502850 MAPK15Q8TD08 544 aa12.04□□□□□ -0.48
NUP54-202ENST00000502850 PLD4Q96BZ4 506 aa12.04□□□□□ -0.48
NUP54-202ENST00000502850 MAELQ96JY0 434 aaKnown RBP12.04□□□□□ -0.48
NUP54-202ENST00000502850 CLPTM1LQ96KA5 538 aa12.04□□□□□ -0.48
NUP54-202ENST00000502850 CASD1Q96PB1 797 aa12.04□□□□□ -0.48
NUP54-202ENST00000502850 SEMA3CQ99985 751 aa12.04□□□□□ -0.48
NUP54-202ENST00000502850 TTPALQ9BTX7 342 aa12.04□□□□□ -0.48
NUP54-202ENST00000502850 VCXQ9H320 206 aa12.04□□□□□ -0.48
NUP54-202ENST00000502850 ZNF385DQ9H6B1 395 aa12.04□□□□□ -0.48
NUP54-202ENST00000502850 MAN1C1Q9NR34 630 aa12.04□□□□□ -0.48
NUP54-202ENST00000502850 MARCH5Q9NX47 278 aa12.04□□□□□ -0.48
NUP54-202ENST00000502850 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP12.04□□□□□ -0.48
NUP54-202ENST00000502850 PCDH10Q9P2E7 1040 aa12.04□□□□□ -0.48
NUP54-202ENST00000502850 ZDHHC2Q9UIJ5 367 aa12.04□□□□□ -0.48
NUP54-202ENST00000502850 VPS9D1Q9Y2B5 631 aa12.04□□□□□ -0.48
NUP54-202ENST00000502850 ARIH1Q9Y4X5 557 aaPredicted RBP12.04□□□□□ -0.48
NUP54-202ENST00000502850 TANC1Q9C0D5 1861 aa12.03□□□□□ -0.48
NUP54-202ENST00000502850 TTC3P53804 2025 aa12.03□□□□□ -0.48
NUP54-202ENST00000502850 SLC38A8A6NNN8 435 aa12.03□□□□□ -0.48
NUP54-202ENST00000502850 NEMP1O14524 444 aa12.03□□□□□ -0.48
NUP54-202ENST00000502850 ENPP3O14638 875 aa12.03□□□□□ -0.48
NUP54-202ENST00000502850 PFDN6O15212 129 aa12.03□□□□□ -0.48
NUP54-202ENST00000502850 ACSL4O60488 711 aa12.03□□□□□ -0.48
NUP54-202ENST00000502850 SMIM24O75264 130 aa12.03□□□□□ -0.48
NUP54-202ENST00000502850 RPP40O75818 363 aaKnown RBP12.03□□□□□ -0.48
NUP54-202ENST00000502850 CRTAMO95727 393 aa12.03□□□□□ -0.48
NUP54-202ENST00000502850 CCDC166P0CW27 439 aa12.03□□□□□ -0.48
NUP54-202ENST00000502850 ATP5C1P36542 298 aaKnown RBP12.03□□□□□ -0.48
NUP54-202ENST00000502850 SLC11A1P49279 550 aa12.03□□□□□ -0.48
NUP54-202ENST00000502850 EPHB1P54762 984 aa12.03□□□□□ -0.48
NUP54-202ENST00000502850 IRX1P78414 480 aaPredicted RBP12.03□□□□□ -0.48
NUP54-202ENST00000502850 DLG1Q12959 904 aa12.03□□□□□ -0.48
NUP54-202ENST00000502850 ZNF460Q14592 562 aa12.03□□□□□ -0.48
NUP54-202ENST00000502850 NXNQ6DKJ4 435 aa12.03□□□□□ -0.48
NUP54-202ENST00000502850 RAB44Q7Z6P3 723 aaPredicted RBP12.03□□□□□ -0.48
NUP54-202ENST00000502850 C7orf61Q8IZ16 206 aa12.03□□□□□ -0.48
NUP54-202ENST00000502850 LSMEM2Q8N112 164 aa12.03□□□□□ -0.48
NUP54-202ENST00000502850 KDM1BQ8NB78 822 aa12.03□□□□□ -0.48
NUP54-202ENST00000502850 TXNDC5Q8NBS9 432 aaKnown RBP12.03□□□□□ -0.48
NUP54-202ENST00000502850 AGR3Q8TD06 166 aa12.03□□□□□ -0.48
NUP54-202ENST00000502850 BRSK1Q8TDC3 778 aa12.03□□□□□ -0.48
NUP54-202ENST00000502850 UBXN10Q96LJ8 280 aa12.03□□□□□ -0.48
NUP54-202ENST00000502850 LENG8Q96PV6 779 aaPredicted RBP12.03□□□□□ -0.48
NUP54-202ENST00000502850 DDX50Q9BQ39 737 aaKnown RBP12.03□□□□□ -0.48
NUP54-202ENST00000502850 MGME1Q9BQP7 344 aa12.03□□□□□ -0.48
NUP54-202ENST00000502850 OSBPL1AQ9BXW6 950 aa12.03□□□□□ -0.48
NUP54-202ENST00000502850 NUF2Q9BZD4 464 aa12.03□□□□□ -0.48
NUP54-202ENST00000502850 GPR62Q9BZJ7 368 aa12.03□□□□□ -0.48
NUP54-202ENST00000502850 NACA2Q9H009 215 aa12.03□□□□□ -0.48
NUP54-202ENST00000502850 EFCAB1Q9HAE3 211 aa12.03□□□□□ -0.48
NUP54-202ENST00000502850 PDFQ9HBH1 243 aa12.03□□□□□ -0.48
NUP54-202ENST00000502850 CYP4F11Q9HBI6 524 aa12.03□□□□□ -0.48
NUP54-202ENST00000502850 ZBTB26Q9HCK0 441 aa12.03□□□□□ -0.48
NUP54-202ENST00000502850 INTS10Q9NVR2 710 aaKnown RBP12.03□□□□□ -0.48
NUP54-202ENST00000502850 GTSE1Q9NYZ3 720 aa12.03□□□□□ -0.48
NUP54-202ENST00000502850 HSFX1Q9UBD0 423 aa12.03□□□□□ -0.48
NUP54-202ENST00000502850 CCDC189A1A4V9 331 aa12.02□□□□□ -0.49
NUP54-202ENST00000502850 A8MT66 165 aa12.02□□□□□ -0.49
NUP54-202ENST00000502850 LDB2O43679 373 aa12.02□□□□□ -0.49
NUP54-202ENST00000502850 CLDN11O75508 207 aa12.02□□□□□ -0.49
NUP54-202ENST00000502850 PARNO95453 639 aaKnown RBP12.02□□□□□ -0.49
NUP54-202ENST00000502850 NDST3O95803 873 aa12.02□□□□□ -0.49
NUP54-202ENST00000502850 EPHA3P29320 983 aa12.02□□□□□ -0.49
NUP54-202ENST00000502850 NUDT2P50583 147 aa12.02□□□□□ -0.49
NUP54-202ENST00000502850 RBM20Q5T481 1227 aaKnown RBP12.02□□□□□ -0.49
NUP54-202ENST00000502850 RASIP1Q5U651 963 aa12.02□□□□□ -0.49
NUP54-202ENST00000502850 ZFP1Q6P2D0 407 aa12.02□□□□□ -0.49
NUP54-202ENST00000502850 RNF19BQ6ZMZ0 732 aa12.02□□□□□ -0.49
NUP54-202ENST00000502850 BNC2Q6ZN30 1099 aaPredicted RBP12.02□□□□□ -0.49
NUP54-202ENST00000502850 CHST9Q7L1S5 443 aa12.02□□□□□ -0.49
NUP54-202ENST00000502850 PTAR1Q7Z6K3 402 aaPredicted RBP12.02□□□□□ -0.49
NUP54-202ENST00000502850 DHDDSQ86SQ9 333 aa12.02□□□□□ -0.49
NUP54-202ENST00000502850 SNX32Q86XE0 403 aa12.02□□□□□ -0.49
NUP54-202ENST00000502850 LGI2Q8N0V4 545 aa12.02□□□□□ -0.49
NUP54-202ENST00000502850 PGAM4Q8N0Y7 254 aa12.02□□□□□ -0.49
NUP54-202ENST00000502850 TTC9BQ8N6N2 239 aa12.02□□□□□ -0.49
NUP54-202ENST00000502850 NRG4Q8WWG1 115 aa12.02□□□□□ -0.49
NUP54-202ENST00000502850 HDAC10Q969S8 669 aa12.02□□□□□ -0.49
NUP54-202ENST00000502850 L3HYPDHQ96EM0 354 aa12.02□□□□□ -0.49
NUP54-202ENST00000502850 NDNQ99608 321 aa12.02□□□□□ -0.49
NUP54-202ENST00000502850 OLFM1Q99784 485 aa12.02□□□□□ -0.49
NUP54-202ENST00000502850 CINPQ9BW66 212 aaPredicted RBP12.02□□□□□ -0.49
NUP54-202ENST00000502850 PRO3102Q9H379 93 aa12.02□□□□□ -0.49
NUP54-202ENST00000502850 CATSPERZQ9NTU4 200 aa12.02□□□□□ -0.49
NUP54-202ENST00000502850 UBA2Q9UBT2 640 aaPredicted RBP12.02□□□□□ -0.49
NUP54-202ENST00000502850 STK39Q9UEW8 545 aa12.02□□□□□ -0.49
NUP54-202ENST00000502850 POMPQ9Y244 141 aa12.02□□□□□ -0.49
NUP54-202ENST00000502850 LOC100653049A0A140TA62 436 aa12.01□□□□□ -0.49
NUP54-202ENST00000502850 CD3EAPO15446 510 aaKnown RBP12.01□□□□□ -0.49
NUP54-202ENST00000502850 KRT34O76011 436 aa12.01□□□□□ -0.49
NUP54-202ENST00000502850 WISP3O95389 354 aaPredicted RBP12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms