RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 MBTPS1Q14703 1052 aa16.62■□□□□ 0.25
CCDC88B-210ENST00000494566 ZNF423Q2M1K9 1284 aa16.62■□□□□ 0.25
CCDC88B-210ENST00000494566 RANBP10Q6VN20 620 aa16.62■□□□□ 0.25
CCDC88B-210ENST00000494566 ZNF598Q86UK7 904 aaKnown RBP16.62■□□□□ 0.25
CCDC88B-210ENST00000494566 SREK1Q8WXA9 508 aaKnown RBP16.62■□□□□ 0.25
CCDC88B-210ENST00000494566 STK39Q9UEW8 545 aa16.62■□□□□ 0.25
CCDC88B-210ENST00000494566 RAP2CQ9Y3L5 183 aa16.62■□□□□ 0.25
CCDC88B-210ENST00000494566 TMEM114B3SHH9 223 aa16.61■□□□□ 0.25
CCDC88B-210ENST00000494566 E7ENX8 843 aa16.61■□□□□ 0.25
CCDC88B-210ENST00000494566 TMX2-CTNND1H3BSU7 103 aa16.61■□□□□ 0.25
CCDC88B-210ENST00000494566 HOXC13P31276 330 aa16.61■□□□□ 0.25
CCDC88B-210ENST00000494566 PTK2BQ14289 1009 aa16.61■□□□□ 0.25
CCDC88B-210ENST00000494566 MAPRE1Q15691 268 aaKnown RBP16.61■□□□□ 0.25
CCDC88B-210ENST00000494566 OGFRL1Q5TC84 451 aaPredicted RBP16.61■□□□□ 0.25
CCDC88B-210ENST00000494566 NEPROQ6NW34 567 aa16.61■□□□□ 0.25
CCDC88B-210ENST00000494566 LINC01599Q8WXQ3 324 aa16.61■□□□□ 0.25
CCDC88B-210ENST00000494566 JADE3Q92613 823 aa16.61■□□□□ 0.25
CCDC88B-210ENST00000494566 POMKQ9H5K3 350 aa16.61■□□□□ 0.25
CCDC88B-210ENST00000494566 COQ10BQ9H8M1 238 aa16.61■□□□□ 0.25
CCDC88B-210ENST00000494566 PDE4DIPQ5VU43 2346 aa16.61■□□□□ 0.25
CCDC88B-210ENST00000494566 TARM1B6A8C7 271 aa16.61■□□□□ 0.25
CCDC88B-210ENST00000494566 CAPN15O75808 1086 aa16.61■□□□□ 0.25
CCDC88B-210ENST00000494566 PEX11BO96011 259 aa16.61■□□□□ 0.25
CCDC88B-210ENST00000494566 MT-ND1P03886 318 aa16.61■□□□□ 0.25
CCDC88B-210ENST00000494566 GLDCP23378 1020 aa16.61■□□□□ 0.25
CCDC88B-210ENST00000494566 YWHAQP27348 245 aa16.61■□□□□ 0.25
CCDC88B-210ENST00000494566 CD151P48509 253 aa16.61■□□□□ 0.25
CCDC88B-210ENST00000494566 ARSDP51689 593 aa16.61■□□□□ 0.25
CCDC88B-210ENST00000494566 TBX4P57082 545 aa16.61■□□□□ 0.25
CCDC88B-210ENST00000494566 FRG1Q14331 258 aaKnown RBP16.61■□□□□ 0.25
CCDC88B-210ENST00000494566 AGKQ53H12 422 aa16.61■□□□□ 0.25
CCDC88B-210ENST00000494566 MS4A13Q5J8X5 152 aa16.61■□□□□ 0.25
CCDC88B-210ENST00000494566 OR6P1Q8NGX9 317 aa16.61■□□□□ 0.25
CCDC88B-210ENST00000494566 PIF1Q9H611 641 aa16.61■□□□□ 0.25
CCDC88B-210ENST00000494566 TREX1Q9NSU2 369 aa16.61■□□□□ 0.25
CCDC88B-210ENST00000494566 SAC3D1A6NKF1 404 aa16.6■□□□□ 0.25
CCDC88B-210ENST00000494566 NT5C1B-RDH14C9J2C7 533 aa16.6■□□□□ 0.25
CCDC88B-210ENST00000494566 ATP5BP06576 529 aaKnown RBP16.6■□□□□ 0.25
CCDC88B-210ENST00000494566 CYP2C18P33260 490 aa16.6■□□□□ 0.25
CCDC88B-210ENST00000494566 ZNF135P52742 658 aaPredicted RBP16.6■□□□□ 0.25
CCDC88B-210ENST00000494566 DYNC1I2Q13409 638 aaKnown RBP16.6■□□□□ 0.25
CCDC88B-210ENST00000494566 ADGRE1Q14246 886 aa16.6■□□□□ 0.25
CCDC88B-210ENST00000494566 GLB1LQ6UWU2 654 aa16.6■□□□□ 0.25
CCDC88B-210ENST00000494566 PIM3Q86V86 326 aa16.6■□□□□ 0.25
CCDC88B-210ENST00000494566 LRCH3Q96II8 777 aa16.6■□□□□ 0.25
CCDC88B-210ENST00000494566 SERPINB11Q96P15 392 aa16.6■□□□□ 0.25
CCDC88B-210ENST00000494566 UPF3AQ9H1J1 476 aaKnown RBP16.6■□□□□ 0.25
CCDC88B-210ENST00000494566 NOL11Q9H8H0 719 aaKnown RBP16.6■□□□□ 0.25
CCDC88B-210ENST00000494566 ENTPD7Q9NQZ7 604 aa16.6■□□□□ 0.25
CCDC88B-210ENST00000494566 GALNT8Q9NY28 637 aa16.6■□□□□ 0.25
CCDC88B-210ENST00000494566 ZNF839A8K0R7 811 aa16.6■□□□□ 0.25
CCDC88B-210ENST00000494566 TIPRLO75663 272 aa16.6■□□□□ 0.25
CCDC88B-210ENST00000494566 CABYRO75952 493 aa16.6■□□□□ 0.25
CCDC88B-210ENST00000494566 CPB1P15086 417 aa16.6■□□□□ 0.25
CCDC88B-210ENST00000494566 SLC12A2P55011 1212 aa16.6■□□□□ 0.25
CCDC88B-210ENST00000494566 CFAP52Q8N1V2 620 aa16.6■□□□□ 0.25
CCDC88B-210ENST00000494566 ANKRD49Q8WVL7 239 aa16.6■□□□□ 0.25
CCDC88B-210ENST00000494566 PRICKLE1Q96MT3 831 aaPredicted RBP16.6■□□□□ 0.25
CCDC88B-210ENST00000494566 SLC29A1Q99808 456 aa16.6■□□□□ 0.25
CCDC88B-210ENST00000494566 DCUN1D5Q9BTE7 237 aa16.6■□□□□ 0.25
CCDC88B-210ENST00000494566 CRISPLD1Q9H336 500 aa16.6■□□□□ 0.25
CCDC88B-210ENST00000494566 EGFL7Q9UHF1 273 aa16.6■□□□□ 0.25
CCDC88B-210ENST00000494566 CRYL1Q9Y2S2 319 aa16.6■□□□□ 0.25
CCDC88B-210ENST00000494566 C7orf72A4D263 438 aa16.59■□□□□ 0.25
CCDC88B-210ENST00000494566 PDLIM1O00151 329 aa16.59■□□□□ 0.25
CCDC88B-210ENST00000494566 PFDN1O60925 122 aa16.59■□□□□ 0.25
CCDC88B-210ENST00000494566 SLC4A1P02730 911 aa16.59■□□□□ 0.25
CCDC88B-210ENST00000494566 ME2P23368 584 aa16.59■□□□□ 0.25
CCDC88B-210ENST00000494566 ACVRL1P37023 503 aa16.59■□□□□ 0.25
CCDC88B-210ENST00000494566 PPARGP37231 505 aaPredicted RBP16.59■□□□□ 0.25
CCDC88B-210ENST00000494566 CDH13P55290 713 aa16.59■□□□□ 0.25
CCDC88B-210ENST00000494566 FCGRTP55899 365 aa16.59■□□□□ 0.25
CCDC88B-210ENST00000494566 YBX1P67809 324 aaKnown RBP16.59■□□□□ 0.25
CCDC88B-210ENST00000494566 MAP7Q14244 749 aa16.59■□□□□ 0.25
CCDC88B-210ENST00000494566 KDELC1Q6UW63 502 aa16.59■□□□□ 0.25
CCDC88B-210ENST00000494566 NUP93Q8N1F7 819 aa16.59■□□□□ 0.25
CCDC88B-210ENST00000494566 ARHGAP18Q8N392 663 aa16.59■□□□□ 0.25
CCDC88B-210ENST00000494566 PDCD6IPQ8WUM4 868 aaKnown RBP16.59■□□□□ 0.25
CCDC88B-210ENST00000494566 SP110Q9HB58 689 aa16.59■□□□□ 0.25
CCDC88B-210ENST00000494566 TBC1D13Q9NVG8 400 aa16.59■□□□□ 0.25
CCDC88B-210ENST00000494566 ZDHHC7Q9NXF8 308 aa16.59■□□□□ 0.25
CCDC88B-210ENST00000494566 MARCH4Q9P2E8 410 aaPredicted RBP16.59■□□□□ 0.25
CCDC88B-210ENST00000494566 RIMS3Q9UJD0 308 aa16.59■□□□□ 0.25
CCDC88B-210ENST00000494566 PCDHB8Q9UN66 801 aa16.59■□□□□ 0.25
CCDC88B-210ENST00000494566 AURKCQ9UQB9 309 aa16.59■□□□□ 0.25
CCDC88B-210ENST00000494566 COMMD3-BMI1R4GMX3 469 aa16.59■□□□□ 0.25
CCDC88B-210ENST00000494566 PSMD3O43242 534 aa16.59■□□□□ 0.25
CCDC88B-210ENST00000494566 CES1P23141 567 aa16.59■□□□□ 0.25
CCDC88B-210ENST00000494566 PIGGQ5H8A4 983 aa16.59■□□□□ 0.25
CCDC88B-210ENST00000494566 VARS2Q5ST30 1063 aaKnown RBP16.59■□□□□ 0.25
CCDC88B-210ENST00000494566 POTEHQ6S545 545 aa16.59■□□□□ 0.25
CCDC88B-210ENST00000494566 IFNEQ86WN2 208 aa16.59■□□□□ 0.25
CCDC88B-210ENST00000494566 APLFQ8IW19 511 aaPredicted RBP16.59■□□□□ 0.25
CCDC88B-210ENST00000494566 CNTN4Q8IWV2 1026 aa16.59■□□□□ 0.25
CCDC88B-210ENST00000494566 PGBD5Q8N414 524 aa16.59■□□□□ 0.25
CCDC88B-210ENST00000494566 LZTR1Q8N653 840 aa16.59■□□□□ 0.25
CCDC88B-210ENST00000494566 C2CD4AQ8NCU7 369 aaPredicted RBP16.59■□□□□ 0.25
CCDC88B-210ENST00000494566 SEPT5Q99719 369 aaPredicted RBP16.59■□□□□ 0.25
CCDC88B-210ENST00000494566 FAM96AQ9H5X1 160 aa16.59■□□□□ 0.25
CCDC88B-210ENST00000494566 UXTQ9UBK9 157 aaPredicted RBP16.59■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms