RNA–Protein interactions for RNA: ENST00000487401.1

SREBF1-215, Transcript of sterol regulatory element binding transcription factor 1, human

TSL 2

Gene SREBF1, Length 477 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SREBF1-215	ENST00000487401	PNMA8B	Q9ULN7	279 aa	Predicted RBP	12.52	□□□□□ -0.41
SREBF1-215	ENST00000487401	GPR34	Q9UPC5	381 aa		12.52	□□□□□ -0.41
SREBF1-215	ENST00000487401		A0A1W2PQ67	120 aa		12.51	□□□□□ -0.41
SREBF1-215	ENST00000487401		A0A1W2PQJ5	194 aa		12.51	□□□□□ -0.41
SREBF1-215	ENST00000487401	SYCE3	A1L190	88 aa		12.51	□□□□□ -0.41
SREBF1-215	ENST00000487401		A8MX80	341 aa		12.51	□□□□□ -0.41
SREBF1-215	ENST00000487401	GOLGA6L19	H0YKK7	550 aa		12.51	□□□□□ -0.41
SREBF1-215	ENST00000487401	TCEA3	O75764	348 aa		12.51	□□□□□ -0.41
SREBF1-215	ENST00000487401	RECQL5	O94762	991 aa	Predicted RBP	12.51	□□□□□ -0.41
SREBF1-215	ENST00000487401	CELA2B	P08218	269 aa	Predicted RBP	12.51	□□□□□ -0.41
SREBF1-215	ENST00000487401	KEL	P23276	732 aa		12.51	□□□□□ -0.41
SREBF1-215	ENST00000487401	NFKBIA	P25963	317 aa		12.51	□□□□□ -0.41
SREBF1-215	ENST00000487401	HSPA9	P38646	679 aa	Known RBP	12.51	□□□□□ -0.41
SREBF1-215	ENST00000487401	SSR1	P43307	286 aa	Known RBP	12.51	□□□□□ -0.41
SREBF1-215	ENST00000487401	SLC10A7	Q0GE19	358 aa		12.51	□□□□□ -0.41
SREBF1-215	ENST00000487401	KRT81	Q14533	505 aa		12.51	□□□□□ -0.41
SREBF1-215	ENST00000487401	ACOX1	Q15067	660 aa		12.51	□□□□□ -0.41
SREBF1-215	ENST00000487401	DPYSL2	Q16555	572 aa		12.51	□□□□□ -0.41
SREBF1-215	ENST00000487401	PERM1	Q5SV97	790 aa		12.51	□□□□□ -0.41
SREBF1-215	ENST00000487401	DPPA4	Q7L190	304 aa		12.51	□□□□□ -0.41
SREBF1-215	ENST00000487401	POLN	Q7Z5Q5	900 aa		12.51	□□□□□ -0.41
SREBF1-215	ENST00000487401	LUZP1	Q86V48	1076 aa		12.51	□□□□□ -0.41
SREBF1-215	ENST00000487401	TP53INP2	Q8IXH6	220 aa		12.51	□□□□□ -0.41
SREBF1-215	ENST00000487401	ARL10	Q8N8L6	244 aa		12.51	□□□□□ -0.41
SREBF1-215	ENST00000487401	ZNF248	Q8NDW4	579 aa		12.51	□□□□□ -0.41
SREBF1-215	ENST00000487401	CSPG4P5	Q96PW8	444 aa		12.51	□□□□□ -0.41
SREBF1-215	ENST00000487401	LGMN	Q99538	433 aa		12.51	□□□□□ -0.41
SREBF1-215	ENST00000487401	CCDC3	Q9BQI4	270 aa		12.51	□□□□□ -0.41
SREBF1-215	ENST00000487401	FUCA2	Q9BTY2	467 aa		12.51	□□□□□ -0.41
SREBF1-215	ENST00000487401	SIRPG	Q9P1W8	387 aa		12.51	□□□□□ -0.41
SREBF1-215	ENST00000487401	RAI2	Q9Y5P3	530 aa		12.51	□□□□□ -0.41
SREBF1-215	ENST00000487401	NBEA	Q8NFP9	2946 aa		12.51	□□□□□ -0.41
SREBF1-215	ENST00000487401	TTC24	A2A3L6	582 aa	Predicted RBP	12.5	□□□□□ -0.41
SREBF1-215	ENST00000487401	MYO1F	O00160	1098 aa		12.5	□□□□□ -0.41
SREBF1-215	ENST00000487401	PDE2A	O00408	941 aa	Predicted RBP	12.5	□□□□□ -0.41
SREBF1-215	ENST00000487401	TRAFD1	O14545	582 aa	Predicted RBP	12.5	□□□□□ -0.41
SREBF1-215	ENST00000487401	RARA	P10276	462 aa		12.5	□□□□□ -0.41
SREBF1-215	ENST00000487401	SERPINB6	P35237	376 aa		12.5	□□□□□ -0.41
SREBF1-215	ENST00000487401	PCBP4	P57723	403 aa	Known RBP	12.5	□□□□□ -0.41
SREBF1-215	ENST00000487401	ERVPABLB-1	P60509	514 aa		12.5	□□□□□ -0.41
SREBF1-215	ENST00000487401	ZBED6	P86452	979 aa		12.5	□□□□□ -0.41
SREBF1-215	ENST00000487401	HGSNAT	Q68CP4	663 aa		12.5	□□□□□ -0.41
SREBF1-215	ENST00000487401	LIPI	Q6XZB0	460 aa		12.5	□□□□□ -0.41
SREBF1-215	ENST00000487401	ATPAF2	Q8N5M1	289 aa		12.5	□□□□□ -0.41
SREBF1-215	ENST00000487401	PLA2G15	Q8NCC3	412 aa		12.5	□□□□□ -0.41
SREBF1-215	ENST00000487401	OR56A4	Q8NGH8	313 aa		12.5	□□□□□ -0.41
SREBF1-215	ENST00000487401	PCDH19	Q8TAB3	1148 aa		12.5	□□□□□ -0.41
SREBF1-215	ENST00000487401	PDCD6IP	Q8WUM4	868 aa	Known RBP	12.5	□□□□□ -0.41
SREBF1-215	ENST00000487401	TEKT4	Q8WW24	435 aa		12.5	□□□□□ -0.41
SREBF1-215	ENST00000487401	IQCD	Q96DY2	449 aa		12.5	□□□□□ -0.41
SREBF1-215	ENST00000487401	ATXN7L3B	Q96GX2	97 aa		12.5	□□□□□ -0.41
SREBF1-215	ENST00000487401	NAF1	Q96HR8	494 aa	Known RBP	12.5	□□□□□ -0.41
SREBF1-215	ENST00000487401	NUP85	Q9BW27	656 aa		12.5	□□□□□ -0.41
SREBF1-215	ENST00000487401	THAP2	Q9H0W7	228 aa		12.5	□□□□□ -0.41
SREBF1-215	ENST00000487401	PRORY	Q9H606	182 aa		12.5	□□□□□ -0.41
SREBF1-215	ENST00000487401	THSD1	Q9NS62	852 aa		12.5	□□□□□ -0.41
SREBF1-215	ENST00000487401	ETNK2	Q9NVF9	386 aa		12.5	□□□□□ -0.41
SREBF1-215	ENST00000487401	ANAPC7	Q9UJX3	599 aa		12.5	□□□□□ -0.41
SREBF1-215	ENST00000487401	LUC7L2	Q9Y383	392 aa	Known RBP	12.5	□□□□□ -0.41
SREBF1-215	ENST00000487401	CACNA1G	O43497	2377 aa		12.49	□□□□□ -0.41
SREBF1-215	ENST00000487401	APC2	O95996	2303 aa		12.49	□□□□□ -0.41
SREBF1-215	ENST00000487401	SOCS5	O75159	536 aa		12.49	□□□□□ -0.41
SREBF1-215	ENST00000487401	DXO	O77932	396 aa	Known RBP	12.49	□□□□□ -0.41
SREBF1-215	ENST00000487401	CYP1A2	P05177	515 aa		12.49	□□□□□ -0.41
SREBF1-215	ENST00000487401	HOXC4	P09017	264 aa	Predicted RBP	12.49	□□□□□ -0.41
SREBF1-215	ENST00000487401	TCF4	P15884	667 aa		12.49	□□□□□ -0.41
SREBF1-215	ENST00000487401	CDH6	P55285	790 aa		12.49	□□□□□ -0.41
SREBF1-215	ENST00000487401	KIAA1024L	P59773	190 aa		12.49	□□□□□ -0.41
SREBF1-215	ENST00000487401	RALGDS	Q12967	914 aa		12.49	□□□□□ -0.41
SREBF1-215	ENST00000487401	SPIDR	Q14159	915 aa		12.49	□□□□□ -0.41
SREBF1-215	ENST00000487401	HADH	Q16836	314 aa	Known RBP	12.49	□□□□□ -0.41
SREBF1-215	ENST00000487401	C3orf38	Q5JPI3	329 aa		12.49	□□□□□ -0.41
SREBF1-215	ENST00000487401	CCDC122	Q5T0U0	273 aa		12.49	□□□□□ -0.41
SREBF1-215	ENST00000487401	MARC1	Q5VT66	337 aa		12.49	□□□□□ -0.41
SREBF1-215	ENST00000487401	BROX	Q5VW32	411 aa		12.49	□□□□□ -0.41
SREBF1-215	ENST00000487401	PNCK	Q6P2M8	343 aa		12.49	□□□□□ -0.41
SREBF1-215	ENST00000487401	FOXR1	Q6PIV2	292 aa		12.49	□□□□□ -0.41
SREBF1-215	ENST00000487401	TAF8	Q7Z7C8	310 aa		12.49	□□□□□ -0.41
SREBF1-215	ENST00000487401	SPACA3	Q8IXA5	215 aa		12.49	□□□□□ -0.41
SREBF1-215	ENST00000487401	NIPA2	Q8N8Q9	360 aa		12.49	□□□□□ -0.41
SREBF1-215	ENST00000487401	KY	Q8NBH2	561 aa		12.49	□□□□□ -0.41
SREBF1-215	ENST00000487401	OR6C4	Q8NGE1	309 aa		12.49	□□□□□ -0.41
SREBF1-215	ENST00000487401	OR1E3	Q8WZA6	343 aa		12.49	□□□□□ -0.41
SREBF1-215	ENST00000487401	FUBP1	Q96AE4	644 aa	Known RBP	12.49	□□□□□ -0.41
SREBF1-215	ENST00000487401	BTBD6	Q96KE9	485 aa		12.49	□□□□□ -0.41
SREBF1-215	ENST00000487401	FCRL3	Q96P31	734 aa	Predicted RBP	12.49	□□□□□ -0.41
SREBF1-215	ENST00000487401	NUDCD1	Q96RS6	583 aa		12.49	□□□□□ -0.41
SREBF1-215	ENST00000487401	UBL7	Q96S82	380 aa	Predicted RBP	12.49	□□□□□ -0.41
SREBF1-215	ENST00000487401	RBM15	Q96T37	977 aa	Known RBP eCLIP	12.49	□□□□□ -0.41	9e-10	■■□□□ 12.5
SREBF1-215	ENST00000487401	WDR26	Q9H7D7	661 aa		12.49	□□□□□ -0.41
SREBF1-215	ENST00000487401	NOD2	Q9HC29	1040 aa		12.49	□□□□□ -0.41
SREBF1-215	ENST00000487401	PCDH18	Q9HCL0	1135 aa		12.49	□□□□□ -0.41
SREBF1-215	ENST00000487401	KCTD5	Q9NXV2	234 aa		12.49	□□□□□ -0.41
SREBF1-215	ENST00000487401	B4GALT6	Q9UBX8	382 aa		12.49	□□□□□ -0.41
SREBF1-215	ENST00000487401	MOSPD1	Q9UJG1	213 aa		12.49	□□□□□ -0.41
SREBF1-215	ENST00000487401	CAPN11	Q9UMQ6	739 aa		12.49	□□□□□ -0.41
SREBF1-215	ENST00000487401	SATB2	Q9UPW6	733 aa		12.49	□□□□□ -0.41
SREBF1-215	ENST00000487401	PCDHGC4	Q9Y5F7	938 aa		12.49	□□□□□ -0.41
SREBF1-215	ENST00000487401	DGKB	Q9Y6T7	804 aa		12.49	□□□□□ -0.41
SREBF1-215	ENST00000487401	CELSR3	Q9NYQ7	3312 aa		12.49	□□□□□ -0.41

Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms