RNA–Protein interactions for RNA: ENST00000475549.1

HDAC3-207, Transcript of histone deacetylase 3, humanhuman

TSL 2

Gene HDAC3, Length 297 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-207ENST00000475549 LSMEM2Q8N112 164 aa7.06□□□□□ -1.28
HDAC3-207ENST00000475549 KYQ8NBH2 561 aa7.06□□□□□ -1.28
HDAC3-207ENST00000475549 CCL4L1Q8NHW4 92 aa7.06□□□□□ -1.28
HDAC3-207ENST00000475549 PCDH19Q8TAB3 1148 aa7.06□□□□□ -1.28
HDAC3-207ENST00000475549 OR1E3Q8WZA6 343 aa7.06□□□□□ -1.28
HDAC3-207ENST00000475549 SLC39A7Q92504 469 aa7.06□□□□□ -1.28
HDAC3-207ENST00000475549 GBP4Q96PP9 640 aa7.06□□□□□ -1.28
HDAC3-207ENST00000475549 SMIM14Q96QK8 99 aa7.06□□□□□ -1.28
HDAC3-207ENST00000475549 PSKH2Q96QS6 385 aa7.06□□□□□ -1.28
HDAC3-207ENST00000475549 UBL7Q96S82 380 aaPredicted RBP7.06□□□□□ -1.28
HDAC3-207ENST00000475549 RBM15Q96T37 977 aaKnown RBP eCLIP7.06□□□□□ -1.28
HDAC3-207ENST00000475549 NCAPGQ9BPX3 1015 aa7.06□□□□□ -1.28
HDAC3-207ENST00000475549 EDEM3Q9BZQ6 932 aa7.06□□□□□ -1.28
HDAC3-207ENST00000475549 FGF22Q9HCT0 170 aa7.06□□□□□ -1.28
HDAC3-207ENST00000475549 MRPL40Q9NQ50 206 aaKnown RBP7.06□□□□□ -1.28
HDAC3-207ENST00000475549 NCKIPSDQ9NZQ3 722 aa7.06□□□□□ -1.28
HDAC3-207ENST00000475549 SIRPGQ9P1W8 387 aa7.06□□□□□ -1.28
HDAC3-207ENST00000475549 GULP1Q9UBP9 304 aa7.06□□□□□ -1.28
HDAC3-207ENST00000475549 CNOT8Q9UFF9 292 aaKnown RBP7.06□□□□□ -1.28
HDAC3-207ENST00000475549 ATP8A1Q9Y2Q0 1164 aa7.06□□□□□ -1.28
HDAC3-207ENST00000475549 ST14Q9Y5Y6 855 aa7.06□□□□□ -1.28
HDAC3-207ENST00000475549 CFAP69A5D8W1 941 aa7.05□□□□□ -1.28
HDAC3-207ENST00000475549 TMEM110-MUSTN1A8MSY1 372 aa7.05□□□□□ -1.28
HDAC3-207ENST00000475549 CDRT15L2A8MXV6 281 aa7.05□□□□□ -1.28
HDAC3-207ENST00000475549 EIF3CLB5ME19 914 aaKnown RBP7.05□□□□□ -1.28
HDAC3-207ENST00000475549 DAPK3O43293 454 aa7.05□□□□□ -1.28
HDAC3-207ENST00000475549 HTRA2O43464 458 aaPredicted RBP7.05□□□□□ -1.28
HDAC3-207ENST00000475549 PRPSAP2O60256 369 aa7.05□□□□□ -1.28
HDAC3-207ENST00000475549 NOBOXO60393 691 aa7.05□□□□□ -1.28
HDAC3-207ENST00000475549 MAFKO60675 156 aa7.05□□□□□ -1.28
HDAC3-207ENST00000475549 TCEA3O75764 348 aa7.05□□□□□ -1.28
HDAC3-207ENST00000475549 PCCBP05166 539 aa7.05□□□□□ -1.28
HDAC3-207ENST00000475549 RARAP10276 462 aa7.05□□□□□ -1.28
HDAC3-207ENST00000475549 XPAP23025 273 aaPredicted RBP7.05□□□□□ -1.28
HDAC3-207ENST00000475549 PCK1P35558 622 aa7.05□□□□□ -1.28
HDAC3-207ENST00000475549 PBX1P40424 430 aa7.05□□□□□ -1.28
HDAC3-207ENST00000475549 ZNF165P49910 485 aa7.05□□□□□ -1.28
HDAC3-207ENST00000475549 PCBP4P57723 403 aaKnown RBP7.05□□□□□ -1.28
HDAC3-207ENST00000475549 CXADRP78310 365 aa7.05□□□□□ -1.28
HDAC3-207ENST00000475549 CCL7P80098 99 aa7.05□□□□□ -1.28
HDAC3-207ENST00000475549 IL10RBQ08334 325 aa7.05□□□□□ -1.28
HDAC3-207ENST00000475549 KLHL30Q0D2K2 578 aa7.05□□□□□ -1.28
HDAC3-207ENST00000475549 LBRQ14739 615 aaKnown RBP7.05□□□□□ -1.28
HDAC3-207ENST00000475549 GRM3Q14832 879 aa7.05□□□□□ -1.28
HDAC3-207ENST00000475549 ELOCQ15369 112 aa7.05□□□□□ -1.28
HDAC3-207ENST00000475549 ASIC2Q16515 512 aa7.05□□□□□ -1.28
HDAC3-207ENST00000475549 DPYSL2Q16555 572 aa7.05□□□□□ -1.28
HDAC3-207ENST00000475549 SMTNL2Q2TAL5 461 aa7.05□□□□□ -1.28
HDAC3-207ENST00000475549 ERAP2Q6P179 960 aa7.05□□□□□ -1.28
HDAC3-207ENST00000475549 PNCKQ6P2M8 343 aa7.05□□□□□ -1.28
HDAC3-207ENST00000475549 LVRNQ6Q4G3 990 aa7.05□□□□□ -1.28
HDAC3-207ENST00000475549 RFLNAQ6ZTI6 216 aa7.05□□□□□ -1.28
HDAC3-207ENST00000475549 TMPRSS9Q7Z410 1059 aa7.05□□□□□ -1.28
HDAC3-207ENST00000475549 NRROSQ86YC3 692 aa7.05□□□□□ -1.28
HDAC3-207ENST00000475549 CPNE8Q86YQ8 564 aa7.05□□□□□ -1.28
HDAC3-207ENST00000475549 PSTKQ8IV42 348 aaKnown RBP7.05□□□□□ -1.28
HDAC3-207ENST00000475549 FSTL5Q8N475 847 aaPredicted RBP7.05□□□□□ -1.28
HDAC3-207ENST00000475549 ARL10Q8N8L6 244 aa7.05□□□□□ -1.28
HDAC3-207ENST00000475549 ZNF248Q8NDW4 579 aa7.05□□□□□ -1.28
HDAC3-207ENST00000475549 GPR156Q8NFN8 814 aa7.05□□□□□ -1.28
HDAC3-207ENST00000475549 TPCN2Q8NHX9 752 aa7.05□□□□□ -1.28
HDAC3-207ENST00000475549 SNRNP27Q8WVK2 155 aaKnown RBP7.05□□□□□ -1.28
HDAC3-207ENST00000475549 CCDC74AQ96AQ1 378 aa7.05□□□□□ -1.28
HDAC3-207ENST00000475549 GRAMD1AQ96CP6 724 aa7.05□□□□□ -1.28
HDAC3-207ENST00000475549 PDXPQ96GD0 296 aa7.05□□□□□ -1.28
HDAC3-207ENST00000475549 BTBD6Q96KE9 485 aa7.05□□□□□ -1.28
HDAC3-207ENST00000475549 COQ10AQ96MF6 247 aa7.05□□□□□ -1.28
HDAC3-207ENST00000475549 CSPG4P5Q96PW8 444 aa7.05□□□□□ -1.28
HDAC3-207ENST00000475549 EIF3CQ99613 913 aaKnown RBP7.05□□□□□ -1.28
HDAC3-207ENST00000475549 C1QTNF7Q9BXJ2 289 aa7.05□□□□□ -1.28
HDAC3-207ENST00000475549 FOXP3Q9BZS1 431 aa7.05□□□□□ -1.28
HDAC3-207ENST00000475549 TMEM168Q9H0V1 697 aa7.05□□□□□ -1.28
HDAC3-207ENST00000475549 NOD2Q9HC29 1040 aa7.05□□□□□ -1.28
HDAC3-207ENST00000475549 MYO1AQ9UBC5 1043 aa7.05□□□□□ -1.28
HDAC3-207ENST00000475549 B4GALT6Q9UBX8 382 aa7.05□□□□□ -1.28
HDAC3-207ENST00000475549 PCDHGC4Q9Y5F7 938 aa7.05□□□□□ -1.28
HDAC3-207ENST00000475549 PCDHGA8Q9Y5G5 932 aa7.05□□□□□ -1.28
HDAC3-207ENST00000475549 DGKBQ9Y6T7 804 aa7.05□□□□□ -1.28
HDAC3-207ENST00000475549 HELZ2Q9BYK8 2649 aaKnown RBP7.05□□□□□ -1.28
HDAC3-207ENST00000475549 NYNRINQ9P2P1 1898 aaKnown RBP7.04□□□□□ -1.28
HDAC3-207ENST00000475549 DOCK4Q8N1I0 1966 aa7.04□□□□□ -1.28
HDAC3-207ENST00000475549 PTPRQQ9UMZ3 2332 aa7.04□□□□□ -1.28
HDAC3-207ENST00000475549 A0A087X0T9 212 aa7.04□□□□□ -1.28
HDAC3-207ENST00000475549 TEX51A0A1B0GUA7 166 aa7.04□□□□□ -1.28
HDAC3-207ENST00000475549 TK2O00142 265 aa7.04□□□□□ -1.28
HDAC3-207ENST00000475549 KLK10O43240 276 aa7.04□□□□□ -1.28
HDAC3-207ENST00000475549 RNF8O76064 485 aa7.04□□□□□ -1.28
HDAC3-207ENST00000475549 TNFSF15O95150 251 aa7.04□□□□□ -1.28
HDAC3-207ENST00000475549 RASGRP1O95267 797 aa7.04□□□□□ -1.28
HDAC3-207ENST00000475549 MBD3O95983 291 aa7.04□□□□□ -1.28
HDAC3-207ENST00000475549 TNFP01375 233 aa7.04□□□□□ -1.28
HDAC3-207ENST00000475549 RPLP0P05388 317 aaKnown RBP7.04□□□□□ -1.28
HDAC3-207ENST00000475549 CEACAM5P06731 702 aa7.04□□□□□ -1.28
HDAC3-207ENST00000475549 PDHA1P08559 390 aa7.04□□□□□ -1.28
HDAC3-207ENST00000475549 HOXC4P09017 264 aaPredicted RBP7.04□□□□□ -1.28
HDAC3-207ENST00000475549 CD48P09326 243 aa7.04□□□□□ -1.28
HDAC3-207ENST00000475549 FAM228BP0C875 321 aa7.04□□□□□ -1.28
HDAC3-207ENST00000475549 CTSEP14091 401 aa7.04□□□□□ -1.28
HDAC3-207ENST00000475549 HGFP14210 728 aa7.04□□□□□ -1.28
HDAC3-207ENST00000475549 LHCGRP22888 699 aa7.04□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms