RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 RBM44Q6ZP01 1051 aaKnown RBP16.67■□□□□ 0.26
CCDC28B-204ENST00000469003 SDR16C5Q8N3Y7 309 aa16.67■□□□□ 0.26
CCDC28B-204ENST00000469003 WDR48Q8TAF3 677 aa16.67■□□□□ 0.26
CCDC28B-204ENST00000469003 TSACCQ96A04 125 aaPredicted RBP16.67■□□□□ 0.26
CCDC28B-204ENST00000469003 WDR92Q96MX6 357 aa16.67■□□□□ 0.26
CCDC28B-204ENST00000469003 PSKH2Q96QS6 385 aa16.67■□□□□ 0.26
CCDC28B-204ENST00000469003 PADI4Q9UM07 663 aa16.67■□□□□ 0.26
CCDC28B-204ENST00000469003 DOLKQ9UPQ8 538 aa16.67■□□□□ 0.26
CCDC28B-204ENST00000469003 OR1A2Q9Y585 309 aa16.67■□□□□ 0.26
CCDC28B-204ENST00000469003 TRAFD1O14545 582 aaPredicted RBP16.66■□□□□ 0.26
CCDC28B-204ENST00000469003 TCEA3O75764 348 aa16.66■□□□□ 0.26
CCDC28B-204ENST00000469003 PCCBP05166 539 aa16.66■□□□□ 0.26
CCDC28B-204ENST00000469003 CELA2BP08218 269 aaPredicted RBP16.66■□□□□ 0.26
CCDC28B-204ENST00000469003 IL1R2P27930 398 aa16.66■□□□□ 0.26
CCDC28B-204ENST00000469003 ARL4AP40617 200 aa16.66■□□□□ 0.26
CCDC28B-204ENST00000469003 SCNN1BP51168 640 aa16.66■□□□□ 0.26
CCDC28B-204ENST00000469003 RP1P56715 2156 aa16.66■□□□□ 0.26
CCDC28B-204ENST00000469003 PCBP4P57723 403 aaKnown RBP16.66■□□□□ 0.26
CCDC28B-204ENST00000469003 ERVPABLB-1P60509 514 aa16.66■□□□□ 0.26
CCDC28B-204ENST00000469003 SRP54P61011 504 aaKnown RBP16.66■□□□□ 0.26
CCDC28B-204ENST00000469003 CCDC173Q0VFZ6 552 aa16.66■□□□□ 0.26
CCDC28B-204ENST00000469003 LBRQ14739 615 aaKnown RBP16.66■□□□□ 0.26
CCDC28B-204ENST00000469003 TDRD12Q587J7 1177 aaKnown RBP16.66■□□□□ 0.26
CCDC28B-204ENST00000469003 HGSNATQ68CP4 663 aa16.66■□□□□ 0.26
CCDC28B-204ENST00000469003 LIPIQ6XZB0 460 aa16.66■□□□□ 0.26
CCDC28B-204ENST00000469003 TP53INP2Q8IXH6 220 aa16.66■□□□□ 0.26
CCDC28B-204ENST00000469003 PAF1Q8N7H5 531 aa16.66■□□□□ 0.26
CCDC28B-204ENST00000469003 ZNF248Q8NDW4 579 aa16.66■□□□□ 0.26
CCDC28B-204ENST00000469003 SCG3Q8WXD2 468 aaKnown RBP16.66■□□□□ 0.26
CCDC28B-204ENST00000469003 HIC2Q96JB3 615 aa16.66■□□□□ 0.26
CCDC28B-204ENST00000469003 UBL7Q96S82 380 aaPredicted RBP16.66■□□□□ 0.26
CCDC28B-204ENST00000469003 KLQ9UEF7 1012 aa16.66■□□□□ 0.26
CCDC28B-204ENST00000469003 ENTPD2Q9Y5L3 495 aa16.66■□□□□ 0.26
CCDC28B-204ENST00000469003 RAI2Q9Y5P3 530 aa16.66■□□□□ 0.26
CCDC28B-204ENST00000469003 BZW2Q9Y6E2 419 aaKnown RBP16.66■□□□□ 0.26
CCDC28B-204ENST00000469003 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP16.65■□□□□ 0.26
CCDC28B-204ENST00000469003 A0A1W2PQJ5 194 aa16.65■□□□□ 0.26
CCDC28B-204ENST00000469003 RECQL5O94762 991 aaPredicted RBP16.65■□□□□ 0.26
CCDC28B-204ENST00000469003 ELFN1P0C7U0 828 aa16.65■□□□□ 0.26
CCDC28B-204ENST00000469003 TCF4P15884 667 aa16.65■□□□□ 0.26
CCDC28B-204ENST00000469003 AMPD1P23109 780 aa16.65■□□□□ 0.26
CCDC28B-204ENST00000469003 KIAA1024LP59773 190 aa16.65■□□□□ 0.26
CCDC28B-204ENST00000469003 SLC10A7Q0GE19 358 aa16.65■□□□□ 0.26
CCDC28B-204ENST00000469003 PIGHQ14442 188 aaPredicted RBP16.65■□□□□ 0.26
CCDC28B-204ENST00000469003 SMTNL2Q2TAL5 461 aa16.65■□□□□ 0.26
CCDC28B-204ENST00000469003 IGF2-ASQ6U949 168 aa16.65■□□□□ 0.26
CCDC28B-204ENST00000469003 CRTC1Q6UUV9 634 aa16.65■□□□□ 0.26
CCDC28B-204ENST00000469003 TMCO3Q6UWJ1 677 aa16.65■□□□□ 0.26
CCDC28B-204ENST00000469003 DPPA4Q7L190 304 aa16.65■□□□□ 0.26
CCDC28B-204ENST00000469003 RD3Q7Z3Z2 195 aa16.65■□□□□ 0.26
CCDC28B-204ENST00000469003 POLNQ7Z5Q5 900 aa16.65■□□□□ 0.26
CCDC28B-204ENST00000469003 GKN2Q86XP6 184 aa16.65■□□□□ 0.26
CCDC28B-204ENST00000469003 SPACA3Q8IXA5 215 aa16.65■□□□□ 0.26
CCDC28B-204ENST00000469003 ARL10Q8N8L6 244 aa16.65■□□□□ 0.26
CCDC28B-204ENST00000469003 PLA2G15Q8NCC3 412 aa16.65■□□□□ 0.26
CCDC28B-204ENST00000469003 PCDH19Q8TAB3 1148 aa16.65■□□□□ 0.26
CCDC28B-204ENST00000469003 SPOCK2Q92563 424 aa16.65■□□□□ 0.26
CCDC28B-204ENST00000469003 HSPH1Q92598 858 aa16.65■□□□□ 0.26
CCDC28B-204ENST00000469003 SYN2Q92777 582 aaPredicted RBP16.65■□□□□ 0.26
CCDC28B-204ENST00000469003 NSMCE3Q96MG7 304 aa16.65■□□□□ 0.26
CCDC28B-204ENST00000469003 CCDC3Q9BQI4 270 aa16.65■□□□□ 0.26
CCDC28B-204ENST00000469003 ASCL3Q9NQ33 180 aa16.65■□□□□ 0.26
CCDC28B-204ENST00000469003 GULP1Q9UBP9 304 aa16.65■□□□□ 0.26
CCDC28B-204ENST00000469003 DGKBQ9Y6T7 804 aa16.65■□□□□ 0.26
CCDC28B-204ENST00000469003 NAV2Q8IVL1 2488 aa16.64■□□□□ 0.26
CCDC28B-204ENST00000469003 A0A1W2PQ67 120 aa16.64■□□□□ 0.25
CCDC28B-204ENST00000469003 TNFP01375 233 aa16.64■□□□□ 0.25
CCDC28B-204ENST00000469003 PRB1P04280 392 aa16.64■□□□□ 0.25
CCDC28B-204ENST00000469003 RARAP10276 462 aa16.64■□□□□ 0.25
CCDC28B-204ENST00000469003 GM2AP17900 193 aa16.64■□□□□ 0.25
CCDC28B-204ENST00000469003 HSPA9P38646 679 aaKnown RBP16.64■□□□□ 0.25
CCDC28B-204ENST00000469003 PBX1P40424 430 aa16.64■□□□□ 0.25
CCDC28B-204ENST00000469003 TPM4P67936 248 aa16.64■□□□□ 0.25
CCDC28B-204ENST00000469003 FANCCQ00597 558 aa16.64■□□□□ 0.25
CCDC28B-204ENST00000469003 TLE3Q04726 772 aa16.64■□□□□ 0.25
CCDC28B-204ENST00000469003 ZNF235Q14590 738 aa16.64■□□□□ 0.25
CCDC28B-204ENST00000469003 C3orf38Q5JPI3 329 aa16.64■□□□□ 0.25
CCDC28B-204ENST00000469003 NYAP1Q6ZVC0 841 aa16.64■□□□□ 0.25
CCDC28B-204ENST00000469003 NIPA2Q8N8Q9 360 aa16.64■□□□□ 0.25
CCDC28B-204ENST00000469003 KYQ8NBH2 561 aa16.64■□□□□ 0.25
CCDC28B-204ENST00000469003 TEKT4Q8WW24 435 aa16.64■□□□□ 0.25
CCDC28B-204ENST00000469003 FUBP1Q96AE4 644 aaKnown RBP16.64■□□□□ 0.25
CCDC28B-204ENST00000469003 ATXN7L3BQ96GX2 97 aa16.64■□□□□ 0.25
CCDC28B-204ENST00000469003 FCRL3Q96P31 734 aaPredicted RBP16.64■□□□□ 0.25
CCDC28B-204ENST00000469003 CSPG4P5Q96PW8 444 aa16.64■□□□□ 0.25
CCDC28B-204ENST00000469003 RBM15Q96T37 977 aaKnown RBP eCLIP16.64■□□□□ 0.25
CCDC28B-204ENST00000469003 LGMNQ99538 433 aa16.64■□□□□ 0.25
CCDC28B-204ENST00000469003 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP16.64■□□□□ 0.25
CCDC28B-204ENST00000469003 THSD1Q9NS62 852 aa16.64■□□□□ 0.25
CCDC28B-204ENST00000469003 STAU2Q9NUL3 570 aaKnown RBP eCLIP16.64■□□□□ 0.25
CCDC28B-204ENST00000469003 ETNK2Q9NVF9 386 aa16.64■□□□□ 0.25
CCDC28B-204ENST00000469003 GPR34Q9UPC5 381 aa16.64■□□□□ 0.25
CCDC28B-204ENST00000469003 SATB2Q9UPW6 733 aa16.64■□□□□ 0.25
CCDC28B-204ENST00000469003 A0A1W2PNU3 283 aaPredicted RBP16.63■□□□□ 0.25
CCDC28B-204ENST00000469003 CACNB4O00305 520 aaPredicted RBP16.63■□□□□ 0.25
CCDC28B-204ENST00000469003 NTN3O00634 580 aaPredicted RBP16.63■□□□□ 0.25
CCDC28B-204ENST00000469003 HTRA2O43464 458 aaPredicted RBP16.63■□□□□ 0.25
CCDC28B-204ENST00000469003 SOCS5O75159 536 aa16.63■□□□□ 0.25
CCDC28B-204ENST00000469003 PEX11BO96011 259 aa16.63■□□□□ 0.25
CCDC28B-204ENST00000469003 HOXC4P09017 264 aaPredicted RBP16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms