RNA–Protein interactions for RNA: ENST00000467819.5

COL9A3-207, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL9A3, Length 993 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-207ENST00000467819 TRIM7Q9C029 511 aa21.2■□□□□ 0.98
COL9A3-207ENST00000467819 CCDC187A0A096LP49 1063 aa21.19■□□□□ 0.98
COL9A3-207ENST00000467819 TNFSF15O95150 251 aa21.19■□□□□ 0.98
COL9A3-207ENST00000467819 ERCC2P18074 760 aa21.19■□□□□ 0.98
COL9A3-207ENST00000467819 CSNK1DP48730 415 aa21.19■□□□□ 0.98
COL9A3-207ENST00000467819 BCL2L1Q07817 233 aa21.19■□□□□ 0.98
COL9A3-207ENST00000467819 AGERQ15109 404 aa21.19■□□□□ 0.98
COL9A3-207ENST00000467819 PLEKHA7Q6IQ23 1121 aa21.19■□□□□ 0.98
COL9A3-207ENST00000467819 PPP1R2P3Q6NXS1 205 aa21.19■□□□□ 0.98
COL9A3-207ENST00000467819 LVRNQ6Q4G3 990 aa21.19■□□□□ 0.98
COL9A3-207ENST00000467819 RFX8Q6ZV50 586 aa21.19■□□□□ 0.98
COL9A3-207ENST00000467819 SDR16C5Q8N3Y7 309 aa21.19■□□□□ 0.98
COL9A3-207ENST00000467819 NPWQ8N729 165 aa21.19■□□□□ 0.98
COL9A3-207ENST00000467819 ATL2Q8NHH9 583 aa21.19■□□□□ 0.98
COL9A3-207ENST00000467819 LRRC53A6NM62 1247 aa21.18■□□□□ 0.98
COL9A3-207ENST00000467819 CDRT15L2A8MXV6 281 aa21.18■□□□□ 0.98
COL9A3-207ENST00000467819 EIF3CLB5ME19 914 aaKnown RBP21.18■□□□□ 0.98
COL9A3-207ENST00000467819 ERVH48-1M5A8F1 160 aa21.18■□□□□ 0.98
COL9A3-207ENST00000467819 NTN3O00634 580 aaPredicted RBP21.18■□□□□ 0.98
COL9A3-207ENST00000467819 RNF8O76064 485 aa21.18■□□□□ 0.98
COL9A3-207ENST00000467819 TNFP01375 233 aa21.18■□□□□ 0.98
COL9A3-207ENST00000467819 ELFN1P0C7U0 828 aa21.18■□□□□ 0.98
COL9A3-207ENST00000467819 RALGDSQ12967 914 aa21.18■□□□□ 0.98
COL9A3-207ENST00000467819 B3GNT8Q7Z7M8 397 aa21.18■□□□□ 0.98
COL9A3-207ENST00000467819 ZNF843Q8N446 348 aa21.18■□□□□ 0.98
COL9A3-207ENST00000467819 ARL14Q8N4G2 192 aa21.18■□□□□ 0.98
COL9A3-207ENST00000467819 GFM1Q96RP9 751 aaKnown RBP21.18■□□□□ 0.98
COL9A3-207ENST00000467819 EIF3CQ99613 913 aaKnown RBP21.18■□□□□ 0.98
COL9A3-207ENST00000467819 EPB41L5Q9HCM4 733 aa21.18■□□□□ 0.98
COL9A3-207ENST00000467819 MYO6Q9UM54 1294 aa21.18■□□□□ 0.98
COL9A3-207ENST00000467819 COL6A6A6NMZ7 2263 aa21.18■□□□□ 0.98
COL9A3-207ENST00000467819 A8MX80 341 aa21.17■□□□□ 0.98
COL9A3-207ENST00000467819 PRPSAP2O60256 369 aa21.17■□□□□ 0.98
COL9A3-207ENST00000467819 RECQL5O94762 991 aaPredicted RBP21.17■□□□□ 0.98
COL9A3-207ENST00000467819 RPLP0P05388 317 aaKnown RBP21.17■□□□□ 0.98
COL9A3-207ENST00000467819 MIPP30301 263 aa21.17■□□□□ 0.98
COL9A3-207ENST00000467819 CCL7P80098 99 aa21.17■□□□□ 0.98
COL9A3-207ENST00000467819 SKOR1P84550 965 aa21.17■□□□□ 0.98
COL9A3-207ENST00000467819 RHDQ02161 417 aa21.17■□□□□ 0.98
COL9A3-207ENST00000467819 CFHR1Q03591 330 aa21.17■□□□□ 0.98
COL9A3-207ENST00000467819 VAC14Q08AM6 782 aa21.17■□□□□ 0.98
COL9A3-207ENST00000467819 ASIC2Q16515 512 aa21.17■□□□□ 0.98
COL9A3-207ENST00000467819 CCDC183Q5T5S1 534 aa21.17■□□□□ 0.98
COL9A3-207ENST00000467819 AFMIDQ63HM1 303 aa21.17■□□□□ 0.98
COL9A3-207ENST00000467819 LIPIQ6XZB0 460 aa21.17■□□□□ 0.98
COL9A3-207ENST00000467819 CYP4V2Q6ZWL3 525 aaPredicted RBP21.17■□□□□ 0.98
COL9A3-207ENST00000467819 OR1E3Q8WZA6 343 aa21.17■□□□□ 0.98
COL9A3-207ENST00000467819 ECHDC3Q96DC8 303 aa21.17■□□□□ 0.98
COL9A3-207ENST00000467819 CCDC97Q96F63 343 aaPredicted RBP21.17■□□□□ 0.98
COL9A3-207ENST00000467819 FOXP3Q9BZS1 431 aa21.17■□□□□ 0.98
COL9A3-207ENST00000467819 WDR70Q9NW82 654 aa21.17■□□□□ 0.98
COL9A3-207ENST00000467819 AHCTF1Q8WYP5 2266 aa21.16■□□□□ 0.98
COL9A3-207ENST00000467819 TMEM202A6NGA9 273 aa21.16■□□□□ 0.98
COL9A3-207ENST00000467819 TMEM191CA6NGB0 347 aa21.16■□□□□ 0.98
COL9A3-207ENST00000467819 CACNB4O00305 520 aaPredicted RBP21.16■□□□□ 0.98
COL9A3-207ENST00000467819 ZIC2O95409 532 aaPredicted RBP21.16■□□□□ 0.98
COL9A3-207ENST00000467819 SCNN1BP51168 640 aa21.16■□□□□ 0.98
COL9A3-207ENST00000467819 TYRO3Q06418 890 aa21.16■□□□□ 0.98
COL9A3-207ENST00000467819 IL10RBQ08334 325 aa21.16■□□□□ 0.98
COL9A3-207ENST00000467819 TP53INP2Q8IXH6 220 aa21.16■□□□□ 0.98
COL9A3-207ENST00000467819 OR56A4Q8NGH8 313 aa21.16■□□□□ 0.98
COL9A3-207ENST00000467819 FUBP1Q96AE4 644 aaKnown RBP21.16■□□□□ 0.98
COL9A3-207ENST00000467819 LIN37Q96GY3 246 aaPredicted RBP21.16■□□□□ 0.98
COL9A3-207ENST00000467819 NSMCE3Q96MG7 304 aa21.16■□□□□ 0.98
COL9A3-207ENST00000467819 RBM15Q96T37 977 aaKnown RBP eCLIP21.16■□□□□ 0.98
COL9A3-207ENST00000467819 HAUS4Q9H6D7 363 aa21.16■□□□□ 0.98
COL9A3-207ENST00000467819 FGF22Q9HCT0 170 aa21.16■□□□□ 0.98
COL9A3-207ENST00000467819 MRPL40Q9NQ50 206 aaKnown RBP21.16■□□□□ 0.98
COL9A3-207ENST00000467819 CNOT8Q9UFF9 292 aaKnown RBP21.16■□□□□ 0.98
COL9A3-207ENST00000467819 CFAP69A5D8W1 941 aa21.15■□□□□ 0.98
COL9A3-207ENST00000467819 D6RAR5 112 aa21.15■□□□□ 0.98
COL9A3-207ENST00000467819 GOLGA6L22H0YM25 854 aa21.15■□□□□ 0.98
COL9A3-207ENST00000467819 FTLP02792 175 aaPredicted RBP21.15■□□□□ 0.98
COL9A3-207ENST00000467819 KIAA1024LP59773 190 aa21.15■□□□□ 0.98
COL9A3-207ENST00000467819 RFTN1Q14699 578 aaPredicted RBP21.15■□□□□ 0.98
COL9A3-207ENST00000467819 E4F1Q66K89 784 aaPredicted RBP21.15■□□□□ 0.98
COL9A3-207ENST00000467819 DPPA4Q7L190 304 aa21.15■□□□□ 0.98
COL9A3-207ENST00000467819 ZNF571Q7Z3V5 609 aaPredicted RBP21.15■□□□□ 0.98
COL9A3-207ENST00000467819 TAF8Q7Z7C8 310 aa21.15■□□□□ 0.98
COL9A3-207ENST00000467819 CLEC14AQ86T13 490 aa21.15■□□□□ 0.98
COL9A3-207ENST00000467819 Q8N9G6 341 aaPredicted RBP21.15■□□□□ 0.98
COL9A3-207ENST00000467819 ZNF653Q96CK0 615 aa21.15■□□□□ 0.98
COL9A3-207ENST00000467819 RTN4Q9NQC3 1192 aaKnown RBP21.15■□□□□ 0.98
COL9A3-207ENST00000467819 CWC15Q9P013 229 aaKnown RBP21.15■□□□□ 0.98
COL9A3-207ENST00000467819 MOSPD1Q9UJG1 213 aa21.15■□□□□ 0.98
COL9A3-207ENST00000467819 DGKBQ9Y6T7 804 aa21.15■□□□□ 0.98
COL9A3-207ENST00000467819 PIEZO2Q9H5I5 2752 aa21.14■□□□□ 0.98
COL9A3-207ENST00000467819 A0A1W2PQM1 296 aa21.14■□□□□ 0.97
COL9A3-207ENST00000467819 TTC24A2A3L6 582 aaPredicted RBP21.14■□□□□ 0.97
COL9A3-207ENST00000467819 PLD2O14939 933 aa21.14■□□□□ 0.97
COL9A3-207ENST00000467819 LRCH4O75427 683 aa21.14■□□□□ 0.97
COL9A3-207ENST00000467819 ITGA2BP08514 1039 aa21.14■□□□□ 0.97
COL9A3-207ENST00000467819 GM2AP17900 193 aa21.14■□□□□ 0.97
COL9A3-207ENST00000467819 MLLT3P42568 568 aaPredicted RBP21.14■□□□□ 0.97
COL9A3-207ENST00000467819 INHBCP55103 352 aa21.14■□□□□ 0.97
COL9A3-207ENST00000467819 POLR2LP62875 67 aaKnown RBP21.14■□□□□ 0.97
COL9A3-207ENST00000467819 NSUN2Q08J23 767 aaKnown RBP eCLIP21.14■□□□□ 0.97
COL9A3-207ENST00000467819 CLN3Q13286 438 aa21.14■□□□□ 0.97
COL9A3-207ENST00000467819 LBRQ14739 615 aaKnown RBP21.14■□□□□ 0.97
COL9A3-207ENST00000467819 ACOX1Q15067 660 aa21.14■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms