RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 SRP54P61011 504 aaKnown RBP7.12□□□□□ -1.27
VPS41-208ENST00000448833 TLE3Q04726 772 aa7.12□□□□□ -1.27
VPS41-208ENST00000448833 TYRO3Q06418 890 aa7.12□□□□□ -1.27
VPS41-208ENST00000448833 KLHL30Q0D2K2 578 aa7.12□□□□□ -1.27
VPS41-208ENST00000448833 CCDC173Q0VFZ6 552 aa7.12□□□□□ -1.27
VPS41-208ENST00000448833 PIGHQ14442 188 aaPredicted RBP7.12□□□□□ -1.27
VPS41-208ENST00000448833 NCAPHQ15003 741 aa7.12□□□□□ -1.27
VPS41-208ENST00000448833 IRF4Q15306 451 aa7.12□□□□□ -1.27
VPS41-208ENST00000448833 WSCD2Q2TBF2 565 aa7.12□□□□□ -1.27
VPS41-208ENST00000448833 PPP6R3Q5H9R7 873 aaPredicted RBP7.12□□□□□ -1.27
VPS41-208ENST00000448833 FIGNQ5HY92 759 aa7.12□□□□□ -1.27
VPS41-208ENST00000448833 GUSBP11Q6P575 273 aa7.12□□□□□ -1.27
VPS41-208ENST00000448833 TMCO3Q6UWJ1 677 aa7.12□□□□□ -1.27
VPS41-208ENST00000448833 ENPP7Q6UWV6 458 aa7.12□□□□□ -1.27
VPS41-208ENST00000448833 RFX8Q6ZV50 586 aa7.12□□□□□ -1.27
VPS41-208ENST00000448833 APTXQ7Z2E3 356 aaKnown RBP7.12□□□□□ -1.27
VPS41-208ENST00000448833 HID1Q8IV36 788 aa7.12□□□□□ -1.27
VPS41-208ENST00000448833 SPACA3Q8IXA5 215 aa7.12□□□□□ -1.27
VPS41-208ENST00000448833 AOPEPQ8N6M6 819 aa7.12□□□□□ -1.27
VPS41-208ENST00000448833 HIC2Q96JB3 615 aa7.12□□□□□ -1.27
VPS41-208ENST00000448833 TMEM74Q96NL1 305 aa7.12□□□□□ -1.27
VPS41-208ENST00000448833 PSKH2Q96QS6 385 aa7.12□□□□□ -1.27
VPS41-208ENST00000448833 LRRC61Q9BV99 259 aa7.12□□□□□ -1.27
VPS41-208ENST00000448833 MAGEB5Q9BZ81 275 aa7.12□□□□□ -1.27
VPS41-208ENST00000448833 SLC39A8Q9C0K1 460 aa7.12□□□□□ -1.27
VPS41-208ENST00000448833 HAUS4Q9H6D7 363 aa7.12□□□□□ -1.27
VPS41-208ENST00000448833 PDFQ9HBH1 243 aa7.12□□□□□ -1.27
VPS41-208ENST00000448833 GULP1Q9UBP9 304 aa7.12□□□□□ -1.27
VPS41-208ENST00000448833 LHX3Q9UBR4 397 aa7.12□□□□□ -1.27
VPS41-208ENST00000448833 KLQ9UEF7 1012 aa7.12□□□□□ -1.27
VPS41-208ENST00000448833 CNOT8Q9UFF9 292 aaKnown RBP7.12□□□□□ -1.27
VPS41-208ENST00000448833 PCSK1NQ9UHG2 260 aa7.12□□□□□ -1.27
VPS41-208ENST00000448833 LCMT1Q9UIC8 334 aa7.12□□□□□ -1.27
VPS41-208ENST00000448833 KLF15Q9UIH9 416 aa7.12□□□□□ -1.27
VPS41-208ENST00000448833 GGT7Q9UJ14 662 aa7.12□□□□□ -1.27
VPS41-208ENST00000448833 ITM2BQ9Y287 266 aa7.12□□□□□ -1.27
VPS41-208ENST00000448833 PCDHB1Q9Y5F3 818 aa7.12□□□□□ -1.27
VPS41-208ENST00000448833 ATMQ13315 3056 aa7.12□□□□□ -1.27
VPS41-208ENST00000448833 KIF26BQ2KJY2 2108 aa7.12□□□□□ -1.27
VPS41-208ENST00000448833 KALRNO60229 2985 aa7.11□□□□□ -1.27
VPS41-208ENST00000448833 ZFC3H1O60293 1989 aaKnown RBP7.11□□□□□ -1.27
VPS41-208ENST00000448833 LY6G6EA0A0G2JKS1 128 aa7.11□□□□□ -1.27
VPS41-208ENST00000448833 LRRC53A6NM62 1247 aa7.11□□□□□ -1.27
VPS41-208ENST00000448833 TMCO5BA8MYB1 307 aa7.11□□□□□ -1.27
VPS41-208ENST00000448833 DFFAO00273 331 aa7.11□□□□□ -1.27
VPS41-208ENST00000448833 KLK10O43240 276 aa7.11□□□□□ -1.27
VPS41-208ENST00000448833 SOCS5O75159 536 aa7.11□□□□□ -1.27
VPS41-208ENST00000448833 GCATO75600 419 aa7.11□□□□□ -1.27
VPS41-208ENST00000448833 PIGNO95427 931 aa7.11□□□□□ -1.27
VPS41-208ENST00000448833 SERPINC1P01008 464 aa7.11□□□□□ -1.27
VPS41-208ENST00000448833 PYGLP06737 847 aa7.11□□□□□ -1.27
VPS41-208ENST00000448833 ITGA2BP08514 1039 aa7.11□□□□□ -1.27
VPS41-208ENST00000448833 CYP2A6P11509 494 aaPredicted RBP7.11□□□□□ -1.27
VPS41-208ENST00000448833 HOXB3P14651 431 aaPredicted RBP7.11□□□□□ -1.27
VPS41-208ENST00000448833 GLB1P16278 677 aa7.11□□□□□ -1.27
VPS41-208ENST00000448833 MIPP30301 263 aa7.11□□□□□ -1.27
VPS41-208ENST00000448833 TRIM23P36406 574 aa7.11□□□□□ -1.27
VPS41-208ENST00000448833 ZNF165P49910 485 aa7.11□□□□□ -1.27
VPS41-208ENST00000448833 SCNN1BP51168 640 aa7.11□□□□□ -1.27
VPS41-208ENST00000448833 CDH6P55285 790 aa7.11□□□□□ -1.27
VPS41-208ENST00000448833 CLDN6P56747 220 aa7.11□□□□□ -1.27
VPS41-208ENST00000448833 KIAA1024LP59773 190 aa7.11□□□□□ -1.27
VPS41-208ENST00000448833 CXADRP78310 365 aa7.11□□□□□ -1.27
VPS41-208ENST00000448833 C1orf61Q13536 156 aa7.11□□□□□ -1.27
VPS41-208ENST00000448833 ARHGEF7Q14155 803 aa7.11□□□□□ -1.27
VPS41-208ENST00000448833 ZNF235Q14590 738 aa7.11□□□□□ -1.27
VPS41-208ENST00000448833 LBRQ14739 615 aaKnown RBP7.11□□□□□ -1.27
VPS41-208ENST00000448833 CLPPQ16740 277 aaPredicted RBP7.11□□□□□ -1.27
VPS41-208ENST00000448833 C3orf38Q5JPI3 329 aa7.11□□□□□ -1.27
VPS41-208ENST00000448833 AFMIDQ63HM1 303 aa7.11□□□□□ -1.27
VPS41-208ENST00000448833 XKR5Q6UX68 686 aa7.11□□□□□ -1.27
VPS41-208ENST00000448833 RD3Q7Z3Z2 195 aa7.11□□□□□ -1.27
VPS41-208ENST00000448833 CAMK1DQ8IU85 385 aa7.11□□□□□ -1.27
VPS41-208ENST00000448833 SLC35F3Q8IY50 421 aa7.11□□□□□ -1.27
VPS41-208ENST00000448833 RAVER1Q8IY67 606 aaKnown RBP7.11□□□□□ -1.27
VPS41-208ENST00000448833 RBFAQ8N0V3 343 aa7.11□□□□□ -1.27
VPS41-208ENST00000448833 TSEN2Q8NCE0 465 aaKnown RBP7.11□□□□□ -1.27
VPS41-208ENST00000448833 OR56A4Q8NGH8 313 aa7.11□□□□□ -1.27
VPS41-208ENST00000448833 KIAA1524Q8TCG1 905 aa7.11□□□□□ -1.27
VPS41-208ENST00000448833 SNRNP27Q8WVK2 155 aaKnown RBP7.11□□□□□ -1.27
VPS41-208ENST00000448833 TEKT4Q8WW24 435 aa7.11□□□□□ -1.27
VPS41-208ENST00000448833 SYN2Q92777 582 aaPredicted RBP7.11□□□□□ -1.27
VPS41-208ENST00000448833 ECHDC3Q96DC8 303 aa7.11□□□□□ -1.27
VPS41-208ENST00000448833 LIN37Q96GY3 246 aaPredicted RBP7.11□□□□□ -1.27
VPS41-208ENST00000448833 EXOC2Q96KP1 924 aa7.11□□□□□ -1.27
VPS41-208ENST00000448833 GFM1Q96RP9 751 aaKnown RBP7.11□□□□□ -1.27
VPS41-208ENST00000448833 RBM15Q96T37 977 aaKnown RBP eCLIP7.11□□□□□ -1.27
VPS41-208ENST00000448833 CCDC3Q9BQI4 270 aa7.11□□□□□ -1.27
VPS41-208ENST00000448833 SYT11Q9BT88 431 aa7.11□□□□□ -1.27
VPS41-208ENST00000448833 SNRNP25Q9BV90 132 aaKnown RBP7.11□□□□□ -1.27
VPS41-208ENST00000448833 KLC2Q9H0B6 622 aa7.11□□□□□ -1.27
VPS41-208ENST00000448833 ISCUQ9H1K1 167 aa7.11□□□□□ -1.27
VPS41-208ENST00000448833 SLC24A3Q9HC58 644 aa7.11□□□□□ -1.27
VPS41-208ENST00000448833 ASCL3Q9NQ33 180 aa7.11□□□□□ -1.27
VPS41-208ENST00000448833 MBNL1Q9NR56 388 aaKnown RBP7.11□□□□□ -1.27
VPS41-208ENST00000448833 PHPT1Q9NRX4 125 aaPredicted RBP7.11□□□□□ -1.27
VPS41-208ENST00000448833 AKAP7Q9P0M2 348 aaPredicted RBP7.11□□□□□ -1.27
VPS41-208ENST00000448833 SEPT10Q9P0V9 454 aa7.11□□□□□ -1.27
VPS41-208ENST00000448833 RCOR3Q9P2K3 495 aaPredicted RBP7.11□□□□□ -1.27
VPS41-208ENST00000448833 IP6K2Q9UHH9 426 aa7.11□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms