RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 PCBP1Q15365 356 aaKnown RBP eCLIP9.92□□□□□ -0.82
SS18-203ENST00000415083 LRRC23Q53EV4 343 aaPredicted RBP9.92□□□□□ -0.82
SS18-203ENST00000415083 KIAA0930Q6ICG6 404 aaPredicted RBP9.92□□□□□ -0.82
SS18-203ENST00000415083 TLK2Q86UE8 772 aa9.92□□□□□ -0.82
SS18-203ENST00000415083 CCDC117Q8IWD4 279 aaPredicted RBP9.92□□□□□ -0.82
SS18-203ENST00000415083 NSUN5Q96P11 429 aaKnown RBP9.92□□□□□ -0.82
SS18-203ENST00000415083 CIB1Q99828 191 aa9.92□□□□□ -0.82
SS18-203ENST00000415083 UNC93B1Q9H1C4 597 aa9.92□□□□□ -0.82
SS18-203ENST00000415083 ADA2Q9NZK5 511 aa9.92□□□□□ -0.82
SS18-203ENST00000415083 H3BMM5 538 aa9.91□□□□□ -0.82
SS18-203ENST00000415083 NME4O00746 187 aa9.91□□□□□ -0.82
SS18-203ENST00000415083 STRNO43815 780 aa9.91□□□□□ -0.82
SS18-203ENST00000415083 CHRNA1P02708 482 aa9.91□□□□□ -0.82
SS18-203ENST00000415083 CCDC166P0CW27 439 aa9.91□□□□□ -0.82
SS18-203ENST00000415083 MTHFD2P13995 350 aa9.91□□□□□ -0.82
SS18-203ENST00000415083 CD151P48509 253 aa9.91□□□□□ -0.82
SS18-203ENST00000415083 GRB7Q14451 532 aa9.91□□□□□ -0.82
SS18-203ENST00000415083 PCSK7Q16549 785 aa9.91□□□□□ -0.82
SS18-203ENST00000415083 AGKQ53H12 422 aa9.91□□□□□ -0.82
SS18-203ENST00000415083 RARS2Q5T160 578 aaKnown RBP9.91□□□□□ -0.82
SS18-203ENST00000415083 TWF2Q6IBS0 349 aaKnown RBP9.91□□□□□ -0.82
SS18-203ENST00000415083 LCA5Q86VQ0 697 aa9.91□□□□□ -0.82
SS18-203ENST00000415083 HERC6Q8IVU3 1022 aa9.91□□□□□ -0.82
SS18-203ENST00000415083 CEP70Q8NHQ1 597 aa9.91□□□□□ -0.82
SS18-203ENST00000415083 TADA1Q96BN2 335 aa9.91□□□□□ -0.82
SS18-203ENST00000415083 SMARCD1Q96GM5 515 aa9.91□□□□□ -0.82
SS18-203ENST00000415083 FCRL2Q96LA5 508 aaPredicted RBP9.91□□□□□ -0.82
SS18-203ENST00000415083 KLHL5Q96PQ7 755 aa9.91□□□□□ -0.82
SS18-203ENST00000415083 KCNA7Q96RP8 456 aa9.91□□□□□ -0.82
SS18-203ENST00000415083 SERPINI1Q99574 410 aa9.91□□□□□ -0.82
SS18-203ENST00000415083 NOL11Q9H8H0 719 aaKnown RBP9.91□□□□□ -0.82
SS18-203ENST00000415083 AGO3Q9H9G7 860 aaKnown RBP9.91□□□□□ -0.82
SS18-203ENST00000415083 VPS45Q9NRW7 570 aa9.91□□□□□ -0.82
SS18-203ENST00000415083 PLK2Q9NYY3 685 aa9.91□□□□□ -0.82
SS18-203ENST00000415083 SCN10AQ9Y5Y9 1956 aa9.91□□□□□ -0.82
SS18-203ENST00000415083 ARHGAP10A1A4S6 786 aa9.91□□□□□ -0.82
SS18-203ENST00000415083 MROH6A6NGR9 719 aa9.91□□□□□ -0.82
SS18-203ENST00000415083 SLCO1B7G3V0H7 640 aa9.91□□□□□ -0.82
SS18-203ENST00000415083 CAPN15O75808 1086 aa9.91□□□□□ -0.82
SS18-203ENST00000415083 IPO13O94829 963 aaKnown RBP9.91□□□□□ -0.82
SS18-203ENST00000415083 S1PR4O95977 384 aa9.91□□□□□ -0.82
SS18-203ENST00000415083 CAPN3P20807 821 aa9.91□□□□□ -0.82
SS18-203ENST00000415083 WNT3AP56704 352 aa9.91□□□□□ -0.82
SS18-203ENST00000415083 ZNF33AQ06730 810 aa9.91□□□□□ -0.82
SS18-203ENST00000415083 TNK2Q07912 1038 aa9.91□□□□□ -0.82
SS18-203ENST00000415083 ART3Q13508 389 aa9.91□□□□□ -0.82
SS18-203ENST00000415083 FASTKQ14296 549 aaKnown RBP9.91□□□□□ -0.82
SS18-203ENST00000415083 ZNF678Q5SXM1 525 aa9.91□□□□□ -0.82
SS18-203ENST00000415083 GPR158Q5T848 1215 aa9.91□□□□□ -0.82
SS18-203ENST00000415083 NEPROQ6NW34 567 aa9.91□□□□□ -0.82
SS18-203ENST00000415083 PDZD4Q76G19 769 aaPredicted RBP9.91□□□□□ -0.82
SS18-203ENST00000415083 PIWIL4Q7Z3Z4 852 aaKnown RBP9.91□□□□□ -0.82
SS18-203ENST00000415083 LINC00523Q86TU6 105 aa9.91□□□□□ -0.82
SS18-203ENST00000415083 TEX37Q96LM6 180 aa9.91□□□□□ -0.82
SS18-203ENST00000415083 RBM22Q9NW64 420 aaKnown RBP eCLIP9.91□□□□□ -0.823e-7■■■■■ 29.6
SS18-203ENST00000415083 NCKIPSDQ9NZQ3 722 aa9.91□□□□□ -0.82
SS18-203ENST00000415083 CDH9Q9ULB4 789 aa9.91□□□□□ -0.82
SS18-203ENST00000415083 MED16Q9Y2X0 877 aa9.91□□□□□ -0.82
SS18-203ENST00000415083 AP4S1Q9Y587 144 aa9.91□□□□□ -0.82
SS18-203ENST00000415083 PTCH2Q9Y6C5 1203 aa9.91□□□□□ -0.82
SS18-203ENST00000415083 HTRA2O43464 458 aaPredicted RBP9.91□□□□□ -0.82
SS18-203ENST00000415083 TIPRLO75663 272 aa9.91□□□□□ -0.82
SS18-203ENST00000415083 CNTN5O94779 1100 aa9.91□□□□□ -0.82
SS18-203ENST00000415083 SIX3O95343 332 aaPredicted RBP9.91□□□□□ -0.82
SS18-203ENST00000415083 FAM163BP0C2L3 166 aa9.91□□□□□ -0.82
SS18-203ENST00000415083 FAM58BPP0C7Q3 252 aa9.91□□□□□ -0.82
SS18-203ENST00000415083 OXTRP30559 389 aa9.91□□□□□ -0.82
SS18-203ENST00000415083 USP46P62068 366 aa9.91□□□□□ -0.82
SS18-203ENST00000415083 SLC10A7Q0GE19 358 aa9.91□□□□□ -0.82
SS18-203ENST00000415083 DYNC1I2Q13409 638 aaKnown RBP9.91□□□□□ -0.82
SS18-203ENST00000415083 HECTD2Q5U5R9 776 aa9.91□□□□□ -0.82
SS18-203ENST00000415083 CILP2Q8IUL8 1156 aa9.91□□□□□ -0.82
SS18-203ENST00000415083 DRAXINQ8NBI3 349 aaPredicted RBP9.91□□□□□ -0.82
SS18-203ENST00000415083 DLG3Q92796 817 aa9.91□□□□□ -0.82
SS18-203ENST00000415083 ARNT2Q9HBZ2 717 aa9.91□□□□□ -0.82
SS18-203ENST00000415083 PREBQ9HCU5 417 aa9.91□□□□□ -0.82
SS18-203ENST00000415083 FAM105AQ9NUU6 356 aa9.91□□□□□ -0.82
SS18-203ENST00000415083 USP22Q9UPT9 525 aa9.91□□□□□ -0.82
SS18-203ENST00000415083 DNAJC15Q9Y5T4 150 aa9.91□□□□□ -0.82
SS18-203ENST00000415083 A0A087X1B8 175 aa9.9□□□□□ -0.82
SS18-203ENST00000415083 FAM155AB1AL88 458 aaPredicted RBP9.9□□□□□ -0.82
SS18-203ENST00000415083 H3BNH8 94 aa9.9□□□□□ -0.82
SS18-203ENST00000415083 PSMD12O00232 456 aaPredicted RBP9.9□□□□□ -0.82
SS18-203ENST00000415083 MUSKO15146 869 aa9.9□□□□□ -0.82
SS18-203ENST00000415083 HNRNPRO43390 633 aaKnown RBP9.9□□□□□ -0.82
SS18-203ENST00000415083 TNFAIP8O95379 198 aa9.9□□□□□ -0.82
SS18-203ENST00000415083 ATXN1LP0C7T5 689 aaKnown RBP9.9□□□□□ -0.82
SS18-203ENST00000415083 CDH13P55290 713 aa9.9□□□□□ -0.82
SS18-203ENST00000415083 NME5P56597 212 aa9.9□□□□□ -0.82
SS18-203ENST00000415083 POU4F1Q01851 419 aa9.9□□□□□ -0.82
SS18-203ENST00000415083 PRKCQQ04759 706 aa9.9□□□□□ -0.82
SS18-203ENST00000415083 OR4D1Q15615 310 aa9.9□□□□□ -0.82
SS18-203ENST00000415083 ARL13BQ3SXY8 428 aa9.9□□□□□ -0.82
SS18-203ENST00000415083 ALFQ53S48 1182 aa9.9□□□□□ -0.82
SS18-203ENST00000415083 MORN1Q5T089 497 aa9.9□□□□□ -0.82
SS18-203ENST00000415083 POTEHQ6S545 545 aa9.9□□□□□ -0.82
SS18-203ENST00000415083 SETD3Q86TU7 594 aaPredicted RBP9.9□□□□□ -0.82
SS18-203ENST00000415083 FIBCD1Q8N539 461 aa9.9□□□□□ -0.82
SS18-203ENST00000415083 ATPAF2Q8N5M1 289 aa9.9□□□□□ -0.82
SS18-203ENST00000415083 CANT1Q8WVQ1 401 aa9.9□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms