RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 CCNG1P51959 295 aa9.13□□□□□ -0.95
LIG4-202ENST00000405925 PLIN5Q00G26 463 aa9.13□□□□□ -0.95
LIG4-202ENST00000405925 RING1Q06587 406 aa9.13□□□□□ -0.95
LIG4-202ENST00000405925 ILF2Q12905 390 aaKnown RBP9.13□□□□□ -0.95
LIG4-202ENST00000405925 TRIM68Q6AZZ1 485 aa9.13□□□□□ -0.95
LIG4-202ENST00000405925 CNSTQ6PJW8 725 aa9.13□□□□□ -0.95
LIG4-202ENST00000405925 ARHGAP36Q6ZRI8 547 aa9.13□□□□□ -0.95
LIG4-202ENST00000405925 SPATA24Q86W54 205 aa9.13□□□□□ -0.95
LIG4-202ENST00000405925 TMEM173Q86WV6 379 aaPredicted RBP9.13□□□□□ -0.95
LIG4-202ENST00000405925 RBFAQ8N0V3 343 aa9.13□□□□□ -0.95
LIG4-202ENST00000405925 NKAPQ8N5F7 415 aaKnown RBP9.13□□□□□ -0.95
LIG4-202ENST00000405925 STAG3L4Q8TBR4 150 aa9.13□□□□□ -0.95
LIG4-202ENST00000405925 STYXQ8WUJ0 223 aa9.13□□□□□ -0.95
LIG4-202ENST00000405925 FAR2Q96K12 515 aa9.13□□□□□ -0.95
LIG4-202ENST00000405925 SPATA17Q96L03 361 aa9.13□□□□□ -0.95
LIG4-202ENST00000405925 TRMT61BQ9BVS5 477 aaKnown RBP9.13□□□□□ -0.95
LIG4-202ENST00000405925 MRPL1Q9BYD6 325 aaKnown RBP9.13□□□□□ -0.95
LIG4-202ENST00000405925 POMKQ9H5K3 350 aa9.13□□□□□ -0.95
LIG4-202ENST00000405925 IL1RL2Q9HB29 575 aa9.13□□□□□ -0.95
LIG4-202ENST00000405925 MID1IP1Q9NPA3 183 aa9.13□□□□□ -0.95
LIG4-202ENST00000405925 A0A0D9SEW6 157 aa9.13□□□□□ -0.95
LIG4-202ENST00000405925 GLYATL1P3A0A0U1RQE8 302 aa9.13□□□□□ -0.95
LIG4-202ENST00000405925 FAM237BA0A1B0GVD1 139 aa9.13□□□□□ -0.95
LIG4-202ENST00000405925 LOC101059915A0A1B0GWI6 518 aaPredicted RBP9.13□□□□□ -0.95
LIG4-202ENST00000405925 PALM2-AKAP2B1ALY0 433 aaPredicted RBP9.13□□□□□ -0.95
LIG4-202ENST00000405925 STC2O76061 302 aa9.13□□□□□ -0.95
LIG4-202ENST00000405925 PRKCGP05129 697 aa9.13□□□□□ -0.95
LIG4-202ENST00000405925 EPCAMP16422 314 aa9.13□□□□□ -0.95
LIG4-202ENST00000405925 CDK7P50613 346 aa9.13□□□□□ -0.95
LIG4-202ENST00000405925 NME5P56597 212 aa9.13□□□□□ -0.95
LIG4-202ENST00000405925 ABCE1P61221 599 aaKnown RBP9.13□□□□□ -0.95
LIG4-202ENST00000405925 MPP1Q00013 466 aa9.13□□□□□ -0.95
LIG4-202ENST00000405925 ZBTB17Q13105 803 aa9.13□□□□□ -0.95
LIG4-202ENST00000405925 PRKAA1Q13131 559 aa9.13□□□□□ -0.95
LIG4-202ENST00000405925 MBTPS1Q14703 1052 aa9.13□□□□□ -0.95
LIG4-202ENST00000405925 PDGFRLQ15198 375 aa9.13□□□□□ -0.95
LIG4-202ENST00000405925 NR6A1Q15406 480 aa9.13□□□□□ -0.95
LIG4-202ENST00000405925 MSANTD2Q6P1R3 559 aa9.13□□□□□ -0.95
LIG4-202ENST00000405925 Q6ZVU0 165 aa9.13□□□□□ -0.95
LIG4-202ENST00000405925 KIF2BQ8N4N8 673 aa9.13□□□□□ -0.95
LIG4-202ENST00000405925 NAT8LQ8N9F0 302 aa9.13□□□□□ -0.95
LIG4-202ENST00000405925 SLCO2A1Q92959 643 aa9.13□□□□□ -0.95
LIG4-202ENST00000405925 FAM126AQ9BYI3 521 aaPredicted RBP9.13□□□□□ -0.95
LIG4-202ENST00000405925 MIR1-1HGQ9H1L0 117 aa9.13□□□□□ -0.95
LIG4-202ENST00000405925 NIPSNAP3AQ9UFN0 247 aaPredicted RBP9.13□□□□□ -0.95
LIG4-202ENST00000405925 ACTL7BQ9Y614 415 aa9.13□□□□□ -0.95
LIG4-202ENST00000405925 A0A087X1B8 175 aa9.13□□□□□ -0.95
LIG4-202ENST00000405925 FOXO6A8MYZ6 492 aa9.13□□□□□ -0.95
LIG4-202ENST00000405925 PIGNO95427 931 aa9.13□□□□□ -0.95
LIG4-202ENST00000405925 PRAMEF1O95521 474 aa9.13□□□□□ -0.95
LIG4-202ENST00000405925 OLIG2Q13516 323 aa9.13□□□□□ -0.95
LIG4-202ENST00000405925 GRAMD1BQ3KR37 738 aa9.13□□□□□ -0.95
LIG4-202ENST00000405925 TSTD2Q5T7W7 516 aa9.13□□□□□ -0.95
LIG4-202ENST00000405925 SNX30Q5VWJ9 437 aa9.13□□□□□ -0.95
LIG4-202ENST00000405925 LRRC8EQ6NSJ5 796 aa9.13□□□□□ -0.95
LIG4-202ENST00000405925 ANKRD33Q7Z3H0 272 aa9.13□□□□□ -0.95
LIG4-202ENST00000405925 SCD5Q86SK9 330 aa9.13□□□□□ -0.95
LIG4-202ENST00000405925 UBR7Q8N806 425 aa9.13□□□□□ -0.95
LIG4-202ENST00000405925 OR14C36Q8NHC7 312 aa9.13□□□□□ -0.95
LIG4-202ENST00000405925 ACMSDQ8TDX5 336 aa9.13□□□□□ -0.95
LIG4-202ENST00000405925 GDPD5Q8WTR4 605 aa9.13□□□□□ -0.95
LIG4-202ENST00000405925 IGSF8Q969P0 613 aa9.13□□□□□ -0.95
LIG4-202ENST00000405925 CMTM5Q96DZ9 223 aa9.13□□□□□ -0.95
LIG4-202ENST00000405925 CLSTN3Q9BQT9 956 aa9.13□□□□□ -0.95
LIG4-202ENST00000405925 AASDHPPTQ9NRN7 309 aa9.13□□□□□ -0.95
LIG4-202ENST00000405925 THAP1Q9NVV9 213 aa9.13□□□□□ -0.95
LIG4-202ENST00000405925 SOX13Q9UN79 622 aa9.13□□□□□ -0.95
LIG4-202ENST00000405925 CDK14O94921 469 aa9.12□□□□□ -0.95
LIG4-202ENST00000405925 ALADP13716 330 aa9.12□□□□□ -0.95
LIG4-202ENST00000405925 VAV1P15498 845 aa9.12□□□□□ -0.95
LIG4-202ENST00000405925 RAP1GDS1P52306 607 aa9.12□□□□□ -0.95
LIG4-202ENST00000405925 KLF1Q13351 362 aaPredicted RBP9.12□□□□□ -0.95
LIG4-202ENST00000405925 GRM2Q14416 872 aa9.12□□□□□ -0.95
LIG4-202ENST00000405925 RFTN1Q14699 578 aaPredicted RBP9.12□□□□□ -0.95
LIG4-202ENST00000405925 CRTC3Q6UUV7 619 aa9.12□□□□□ -0.95
LIG4-202ENST00000405925 PTGR2Q8N8N7 351 aaPredicted RBP9.12□□□□□ -0.95
LIG4-202ENST00000405925 METTL6Q8TCB7 284 aa9.12□□□□□ -0.95
LIG4-202ENST00000405925 PTCD2Q8WV60 388 aaKnown RBP9.12□□□□□ -0.95
LIG4-202ENST00000405925 AP2M1Q96CW1 435 aa9.12□□□□□ -0.95
LIG4-202ENST00000405925 TMEM120AQ9BXJ8 343 aa9.12□□□□□ -0.95
LIG4-202ENST00000405925 PAK6Q9NQU5 681 aaPredicted RBP9.12□□□□□ -0.95
LIG4-202ENST00000405925 NDE1Q9NXR1 346 aa9.12□□□□□ -0.95
LIG4-202ENST00000405925 CD84Q9UIB8 345 aa9.12□□□□□ -0.95
LIG4-202ENST00000405925 FKBPLQ9UIM3 349 aa9.12□□□□□ -0.95
LIG4-202ENST00000405925 FER1L6Q2WGJ9 1857 aa9.12□□□□□ -0.95
LIG4-202ENST00000405925 USP1O94782 785 aa9.12□□□□□ -0.95
LIG4-202ENST00000405925 ARCQ7LC44 396 aa9.12□□□□□ -0.95
LIG4-202ENST00000405925 DENND6AQ8IWF6 608 aa9.12□□□□□ -0.95
LIG4-202ENST00000405925 TCEAL8Q8IYN2 117 aa9.12□□□□□ -0.95
LIG4-202ENST00000405925 PCYOX1LQ8NBM8 494 aa9.12□□□□□ -0.95
LIG4-202ENST00000405925 WFIKKN2Q8TEU8 576 aa9.12□□□□□ -0.95
LIG4-202ENST00000405925 ZNF599Q96NL3 588 aa9.12□□□□□ -0.95
LIG4-202ENST00000405925 THTPAQ9BU02 230 aa9.12□□□□□ -0.95
LIG4-202ENST00000405925 YIPF2Q9BWQ6 316 aa9.12□□□□□ -0.95
LIG4-202ENST00000405925 FAM83DQ9H4H8 585 aa9.12□□□□□ -0.95
LIG4-202ENST00000405925 EIF2B3Q9NR50 452 aaKnown RBP9.12□□□□□ -0.95
LIG4-202ENST00000405925 ZDHHC18Q9NUE0 388 aa9.12□□□□□ -0.95
LIG4-202ENST00000405925 TMEM248Q9NWD8 314 aa9.12□□□□□ -0.95
LIG4-202ENST00000405925 FNIP2Q9P278 1114 aa9.12□□□□□ -0.95
LIG4-202ENST00000405925 ZNHIT2Q9UHR6 403 aa9.12□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms