RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 TRPC4APQ8TEL6 797 aa12□□□□□ -0.49
HMGB1-206ENST00000405805 UBASH3BQ8TF42 649 aa12□□□□□ -0.49
HMGB1-206ENST00000405805 RPL10LQ96L21 214 aaKnown RBP12□□□□□ -0.49
HMGB1-206ENST00000405805 IRF2BPLQ9H1B7 796 aa12□□□□□ -0.49
HMGB1-206ENST00000405805 TLE6Q9H808 572 aa12□□□□□ -0.49
HMGB1-206ENST00000405805 PIGVQ9NUD9 493 aa12□□□□□ -0.49
HMGB1-206ENST00000405805 MYH9P35579 1960 aaKnown RBP12□□□□□ -0.49
HMGB1-206ENST00000405805 E5RI56 91 aa12□□□□□ -0.49
HMGB1-206ENST00000405805 KLF11O14901 512 aa12□□□□□ -0.49
HMGB1-206ENST00000405805 MDM4O15151 490 aa12□□□□□ -0.49
HMGB1-206ENST00000405805 PTPN3P26045 913 aa12□□□□□ -0.49
HMGB1-206ENST00000405805 YWHAQP27348 245 aa12□□□□□ -0.49
HMGB1-206ENST00000405805 STT3AP46977 705 aa12□□□□□ -0.49
HMGB1-206ENST00000405805 VPS26BQ4G0F5 336 aa12□□□□□ -0.49
HMGB1-206ENST00000405805 FRA10AC1Q70Z53 315 aa12□□□□□ -0.49
HMGB1-206ENST00000405805 GPR152Q8TDT2 470 aa12□□□□□ -0.49
HMGB1-206ENST00000405805 EGFL8Q99944 293 aa12□□□□□ -0.49
HMGB1-206ENST00000405805 RGS17Q9UGC6 210 aaPredicted RBP12□□□□□ -0.49
HMGB1-206ENST00000405805 SLC2A6Q9UGQ3 507 aa12□□□□□ -0.49
HMGB1-206ENST00000405805 RREB1Q92766 1687 aa12□□□□□ -0.49
HMGB1-206ENST00000405805 TBKBP1A7MCY6 615 aa11.99□□□□□ -0.49
HMGB1-206ENST00000405805 CENPXA8MT69 81 aa11.99□□□□□ -0.49
HMGB1-206ENST00000405805 LINC00032P0C843 101 aa11.99□□□□□ -0.49
HMGB1-206ENST00000405805 ITGB6P18564 788 aa11.99□□□□□ -0.49
HMGB1-206ENST00000405805 CHRM3P20309 590 aa11.99□□□□□ -0.49
HMGB1-206ENST00000405805 CRABP2P29373 138 aa11.99□□□□□ -0.49
HMGB1-206ENST00000405805 ICAM3P32942 547 aa11.99□□□□□ -0.49
HMGB1-206ENST00000405805 SERPINH1P50454 418 aaKnown RBP11.99□□□□□ -0.49
HMGB1-206ENST00000405805 NKX2-5P52952 324 aaPredicted RBP11.99□□□□□ -0.49
HMGB1-206ENST00000405805 SLC25A52Q3SY17 297 aa11.99□□□□□ -0.49
HMGB1-206ENST00000405805 WDR45BQ5MNZ6 344 aa11.99□□□□□ -0.49
HMGB1-206ENST00000405805 FOXB2Q5VYV0 432 aa11.99□□□□□ -0.49
HMGB1-206ENST00000405805 C10orf71Q711Q0 1435 aa11.99□□□□□ -0.49
HMGB1-206ENST00000405805 SENP8Q96LD8 212 aa11.99□□□□□ -0.49
HMGB1-206ENST00000405805 DMRTB1Q96MA1 342 aa11.99□□□□□ -0.49
HMGB1-206ENST00000405805 THUMPD3Q9BV44 507 aaKnown RBP11.99□□□□□ -0.49
HMGB1-206ENST00000405805 TRIM15Q9C019 465 aa11.99□□□□□ -0.49
HMGB1-206ENST00000405805 IL22Q9GZX6 179 aa11.99□□□□□ -0.49
HMGB1-206ENST00000405805 BAG5Q9UL15 447 aa11.99□□□□□ -0.49
HMGB1-206ENST00000405805 TIMM22Q9Y584 194 aa11.99□□□□□ -0.49
HMGB1-206ENST00000405805 DGKBQ9Y6T7 804 aa11.99□□□□□ -0.49
HMGB1-206ENST00000405805 C9IYK1 514 aa11.99□□□□□ -0.49
HMGB1-206ENST00000405805 E7ENX8 843 aa11.99□□□□□ -0.49
HMGB1-206ENST00000405805 TSPAN1O60635 241 aa11.99□□□□□ -0.49
HMGB1-206ENST00000405805 ANXA9O76027 345 aa11.99□□□□□ -0.49
HMGB1-206ENST00000405805 ALBP02768 609 aa11.99□□□□□ -0.49
HMGB1-206ENST00000405805 ATP6V1B2P21281 511 aa11.99□□□□□ -0.49
HMGB1-206ENST00000405805 GJA9P57773 515 aa11.99□□□□□ -0.49
HMGB1-206ENST00000405805 CLDN10P78369 228 aa11.99□□□□□ -0.49
HMGB1-206ENST00000405805 ZFP1Q6P2D0 407 aa11.99□□□□□ -0.49
HMGB1-206ENST00000405805 AKAP14Q86UN6 197 aa11.99□□□□□ -0.49
HMGB1-206ENST00000405805 STK32CQ86UX6 486 aa11.99□□□□□ -0.49
HMGB1-206ENST00000405805 MZB1Q8WU39 189 aa11.99□□□□□ -0.49
HMGB1-206ENST00000405805 KLHL32Q96NJ5 620 aa11.99□□□□□ -0.49
HMGB1-206ENST00000405805 ZNF112Q9UJU3 913 aa11.99□□□□□ -0.49
HMGB1-206ENST00000405805 WNK3Q9BYP7 1800 aa11.99□□□□□ -0.49
HMGB1-206ENST00000405805 DLEC1Q9Y238 1755 aa11.99□□□□□ -0.49
HMGB1-206ENST00000405805 A0A1W2PQ72 361 aa11.99□□□□□ -0.49
HMGB1-206ENST00000405805 OR51F1A6NGY5 319 aa11.99□□□□□ -0.49
HMGB1-206ENST00000405805 CAPN14A8MX76 684 aa11.99□□□□□ -0.49
HMGB1-206ENST00000405805 HACD1B0YJ81 288 aa11.99□□□□□ -0.49
HMGB1-206ENST00000405805 NCK1P16333 377 aa11.99□□□□□ -0.49
HMGB1-206ENST00000405805 PORP16435 677 aaPredicted RBP11.99□□□□□ -0.49
HMGB1-206ENST00000405805 RAB10P61026 200 aa11.99□□□□□ -0.49
HMGB1-206ENST00000405805 PHC1P78364 1004 aa11.99□□□□□ -0.49
HMGB1-206ENST00000405805 PPP1R3AQ16821 1122 aa11.99□□□□□ -0.49
HMGB1-206ENST00000405805 C9orf57Q5W0N0 161 aa11.99□□□□□ -0.49
HMGB1-206ENST00000405805 ANGPTL8Q6UXH0 198 aa11.99□□□□□ -0.49
HMGB1-206ENST00000405805 NECAB2Q7Z6G3 386 aa11.99□□□□□ -0.49
HMGB1-206ENST00000405805 MILR1Q7Z6M3 343 aa11.99□□□□□ -0.49
HMGB1-206ENST00000405805 CBR4Q8N4T8 237 aa11.99□□□□□ -0.49
HMGB1-206ENST00000405805 C2orf69Q8N8R5 385 aa11.99□□□□□ -0.49
HMGB1-206ENST00000405805 SIPA1Q96FS4 1042 aa11.99□□□□□ -0.49
HMGB1-206ENST00000405805 TBCDQ9BTW9 1192 aa11.99□□□□□ -0.49
HMGB1-206ENST00000405805 SOX17Q9H6I2 414 aaPredicted RBP11.99□□□□□ -0.49
HMGB1-206ENST00000405805 NIPSNAP3AQ9UFN0 247 aaPredicted RBP11.99□□□□□ -0.49
HMGB1-206ENST00000405805 RWDD3Q9Y3V2 267 aa11.99□□□□□ -0.49
HMGB1-206ENST00000405805 ORC6Q9Y5N6 252 aa11.99□□□□□ -0.49
HMGB1-206ENST00000405805 SMIM28A0A1B0GU29 152 aa11.98□□□□□ -0.49
HMGB1-206ENST00000405805 CCNKO75909 580 aa11.98□□□□□ -0.49
HMGB1-206ENST00000405805 LRIG2O94898 1065 aa11.98□□□□□ -0.49
HMGB1-206ENST00000405805 EPN2O95208 641 aa11.98□□□□□ -0.49
HMGB1-206ENST00000405805 GSNP06396 782 aa11.98□□□□□ -0.49
HMGB1-206ENST00000405805 SNRPB2P08579 225 aaKnown RBP11.98□□□□□ -0.49
HMGB1-206ENST00000405805 HSPA1AP0DMV8 641 aaKnown RBP11.98□□□□□ -0.49
HMGB1-206ENST00000405805 HSPA1BP0DMV9 641 aaKnown RBP11.98□□□□□ -0.49
HMGB1-206ENST00000405805 TCEA1P23193 301 aaKnown RBP11.98□□□□□ -0.49
HMGB1-206ENST00000405805 SLC26A2P50443 739 aa11.98□□□□□ -0.49
HMGB1-206ENST00000405805 KCNK10P57789 538 aa11.98□□□□□ -0.49
HMGB1-206ENST00000405805 MS4A2Q01362 244 aa11.98□□□□□ -0.49
HMGB1-206ENST00000405805 CES4AQ5XG92 561 aa11.98□□□□□ -0.49
HMGB1-206ENST00000405805 SLC26A9Q7LBE3 791 aa11.98□□□□□ -0.49
HMGB1-206ENST00000405805 LINC00523Q86TU6 105 aa11.98□□□□□ -0.49
HMGB1-206ENST00000405805 EXOC2Q96KP1 924 aa11.98□□□□□ -0.49
HMGB1-206ENST00000405805 TBL1YQ9BQ87 522 aa11.98□□□□□ -0.49
HMGB1-206ENST00000405805 BCO2Q9BYV7 579 aa11.98□□□□□ -0.49
HMGB1-206ENST00000405805 DNAJC28Q9NX36 388 aa11.98□□□□□ -0.49
HMGB1-206ENST00000405805 CD274Q9NZQ7 290 aa11.98□□□□□ -0.49
HMGB1-206ENST00000405805 PGAP2Q9UHJ9 254 aa11.98□□□□□ -0.49
HMGB1-206ENST00000405805 CNTN6Q9UQ52 1028 aa11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms