RNA–Protein interactions for RNA: ENST00000394597.6

RFFL-202, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RFFL, Length 4,227 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-202ENST00000394597 CCDC162PA2VCL2 907 aa5.72□□□□□ -1.49
RFFL-202ENST00000394597 CLDN25C9JDP6 229 aa5.72□□□□□ -1.49
RFFL-202ENST00000394597 CHADO15335 359 aa5.72□□□□□ -1.49
RFFL-202ENST00000394597 H6PDO95479 791 aa5.72□□□□□ -1.49
RFFL-202ENST00000394597 FGBP02675 491 aa5.72□□□□□ -1.49
RFFL-202ENST00000394597 MSL3P1P0C860 447 aa5.72□□□□□ -1.49
RFFL-202ENST00000394597 ALOX12P18054 663 aa5.72□□□□□ -1.49
RFFL-202ENST00000394597 AVPR1AP37288 418 aa5.72□□□□□ -1.49
RFFL-202ENST00000394597 FAAP100Q0VG06 881 aa5.72□□□□□ -1.49
RFFL-202ENST00000394597 MRPL28Q13084 256 aaKnown RBP5.72□□□□□ -1.49
RFFL-202ENST00000394597 POLD3Q15054 466 aaPredicted RBP5.72□□□□□ -1.49
RFFL-202ENST00000394597 DGUOKQ16854 277 aa5.72□□□□□ -1.49
RFFL-202ENST00000394597 WDR45BQ5MNZ6 344 aa5.72□□□□□ -1.49
RFFL-202ENST00000394597 CLEC20AQ6ZU45 233 aa5.72□□□□□ -1.49
RFFL-202ENST00000394597 SLC26A11Q86WA9 606 aa5.72□□□□□ -1.49
RFFL-202ENST00000394597 CPNE8Q86YQ8 564 aa5.72□□□□□ -1.49
RFFL-202ENST00000394597 YAF2Q8IY57 180 aa5.72□□□□□ -1.49
RFFL-202ENST00000394597 LGI2Q8N0V4 545 aa5.72□□□□□ -1.49
RFFL-202ENST00000394597 CARNMT1Q8N4J0 409 aa5.72□□□□□ -1.49
RFFL-202ENST00000394597 ZNF555Q8NEP9 628 aa5.72□□□□□ -1.49
RFFL-202ENST00000394597 PIWIL2Q8TC59 973 aaKnown RBP5.72□□□□□ -1.49
RFFL-202ENST00000394597 SKA2Q8WVK7 121 aaPredicted RBP5.72□□□□□ -1.49
RFFL-202ENST00000394597 KCTD13Q8WZ19 329 aa5.72□□□□□ -1.49
RFFL-202ENST00000394597 NKD2Q969F2 451 aaPredicted RBP5.72□□□□□ -1.49
RFFL-202ENST00000394597 ATXN7L3BQ96GX2 97 aa5.72□□□□□ -1.49
RFFL-202ENST00000394597 FUBP3Q96I24 572 aaKnown RBP eCLIP5.72□□□□□ -1.49
RFFL-202ENST00000394597 MAGED4Q96JG8 741 aa5.72□□□□□ -1.49
RFFL-202ENST00000394597 SPATA13Q96N96 652 aa5.72□□□□□ -1.49
RFFL-202ENST00000394597 CSPG4P5Q96PW8 444 aa5.72□□□□□ -1.49
RFFL-202ENST00000394597 ATXN3LQ9H3M9 355 aa5.72□□□□□ -1.49
RFFL-202ENST00000394597 PRDM12Q9H4Q4 367 aa5.72□□□□□ -1.49
RFFL-202ENST00000394597 C11orf49Q9H6J7 331 aa5.72□□□□□ -1.49
RFFL-202ENST00000394597 USP29Q9HBJ7 922 aa5.72□□□□□ -1.49
RFFL-202ENST00000394597 LRRC4CQ9HCJ2 640 aa5.72□□□□□ -1.49
RFFL-202ENST00000394597 NT5MQ9NPB1 228 aa5.72□□□□□ -1.49
RFFL-202ENST00000394597 IGSF9Q9P2J2 1179 aa5.72□□□□□ -1.49
RFFL-202ENST00000394597 SFMBT1Q9UHJ3 866 aa5.72□□□□□ -1.49
RFFL-202ENST00000394597 POMPQ9Y244 141 aa5.72□□□□□ -1.49
RFFL-202ENST00000394597 RAD54BQ9Y620 910 aa5.72□□□□□ -1.49
RFFL-202ENST00000394597 FER1L6Q2WGJ9 1857 aa5.72□□□□□ -1.49
RFFL-202ENST00000394597 A0A1W2PQH9 124 aa5.72□□□□□ -1.49
RFFL-202ENST00000394597 ENPP3O14638 875 aa5.72□□□□□ -1.49
RFFL-202ENST00000394597 TEX28O15482 410 aa5.72□□□□□ -1.49
RFFL-202ENST00000394597 TBC1D4O60343 1298 aa5.72□□□□□ -1.49
RFFL-202ENST00000394597 WDR47O94967 919 aa5.72□□□□□ -1.49
RFFL-202ENST00000394597 PRLP01236 227 aa5.72□□□□□ -1.49
RFFL-202ENST00000394597 HOXD8P13378 290 aaPredicted RBP5.72□□□□□ -1.49
RFFL-202ENST00000394597 ZNF23P17027 643 aa5.72□□□□□ -1.49
RFFL-202ENST00000394597 ATF4P18848 351 aaPredicted RBP5.72□□□□□ -1.49
RFFL-202ENST00000394597 MAGP20916 626 aa5.72□□□□□ -1.49
RFFL-202ENST00000394597 PRKACBP22694 351 aa5.72□□□□□ -1.49
RFFL-202ENST00000394597 PTGIRP43119 386 aa5.72□□□□□ -1.49
RFFL-202ENST00000394597 GABRB2P47870 512 aa5.72□□□□□ -1.49
RFFL-202ENST00000394597 NPY2RP49146 381 aa5.72□□□□□ -1.49
RFFL-202ENST00000394597 GLUD2P49448 558 aa5.72□□□□□ -1.49
RFFL-202ENST00000394597 TAF10Q12962 218 aa5.72□□□□□ -1.49
RFFL-202ENST00000394597 NOMO1Q15155 1222 aa5.72□□□□□ -1.49
RFFL-202ENST00000394597 SPDYAQ5MJ70 313 aa5.72□□□□□ -1.49
RFFL-202ENST00000394597 UBXN11Q5T124 520 aa5.72□□□□□ -1.49
RFFL-202ENST00000394597 LRRC49Q8IUZ0 686 aa5.72□□□□□ -1.49
RFFL-202ENST00000394597 DHRSXQ8N5I4 330 aa5.72□□□□□ -1.49
RFFL-202ENST00000394597 PLD5Q8N7P1 536 aa5.72□□□□□ -1.49
RFFL-202ENST00000394597 TRPV1Q8NER1 839 aa5.72□□□□□ -1.49
RFFL-202ENST00000394597 GPR152Q8TDT2 470 aa5.72□□□□□ -1.49
RFFL-202ENST00000394597 S100ZQ8WXG8 99 aa5.72□□□□□ -1.49
RFFL-202ENST00000394597 LRRC39Q96DD0 335 aa5.72□□□□□ -1.49
RFFL-202ENST00000394597 PPP1R10Q96QC0 940 aaKnown RBP5.72□□□□□ -1.49
RFFL-202ENST00000394597 SLC9A7Q96T83 725 aa5.72□□□□□ -1.49
RFFL-202ENST00000394597 C17orf80Q9BSJ5 609 aa5.72□□□□□ -1.49
RFFL-202ENST00000394597 CENPOQ9BU64 300 aa5.72□□□□□ -1.49
RFFL-202ENST00000394597 KATNBL1Q9H079 304 aa5.72□□□□□ -1.49
RFFL-202ENST00000394597 SMPD4Q9NXE4 827 aa5.72□□□□□ -1.49
RFFL-202ENST00000394597 POLR2AP24928 1970 aaKnown RBP5.72□□□□□ -1.49
RFFL-202ENST00000394597 USP12O75317 370 aa5.72□□□□□ -1.49
RFFL-202ENST00000394597 CXCL14O95715 111 aa5.72□□□□□ -1.49
RFFL-202ENST00000394597 CLTBP09497 229 aa5.72□□□□□ -1.49
RFFL-202ENST00000394597 TCEA1P23193 301 aaKnown RBP5.72□□□□□ -1.49
RFFL-202ENST00000394597 CST5P28325 142 aaPredicted RBP5.72□□□□□ -1.49
RFFL-202ENST00000394597 CDH15P55291 814 aa5.72□□□□□ -1.49
RFFL-202ENST00000394597 ST8SIA6P61647 398 aa5.72□□□□□ -1.49
RFFL-202ENST00000394597 GSTM4Q03013 218 aa5.72□□□□□ -1.49
RFFL-202ENST00000394597 SOX4Q06945 474 aaPredicted RBP5.72□□□□□ -1.49
RFFL-202ENST00000394597 CYP1B1Q16678 543 aa5.72□□□□□ -1.49
RFFL-202ENST00000394597 FASTKD1Q53R41 847 aaKnown RBP5.72□□□□□ -1.49
RFFL-202ENST00000394597 TBCELQ5QJ74 424 aa5.72□□□□□ -1.49
RFFL-202ENST00000394597 NUDT18Q6ZVK8 323 aa5.72□□□□□ -1.49
RFFL-202ENST00000394597 PTAR1Q7Z6K3 402 aaPredicted RBP5.72□□□□□ -1.49
RFFL-202ENST00000394597 CTU1Q7Z7A3 348 aaKnown RBP5.72□□□□□ -1.49
RFFL-202ENST00000394597 MRPL10Q7Z7H8 261 aaKnown RBP5.72□□□□□ -1.49
RFFL-202ENST00000394597 C14orf80Q86SX3 495 aa5.72□□□□□ -1.49
RFFL-202ENST00000394597 WDTC1Q8N5D0 677 aa5.72□□□□□ -1.49
RFFL-202ENST00000394597 CMASQ8NFW8 434 aaPredicted RBP5.72□□□□□ -1.49
RFFL-202ENST00000394597 CLEC4CQ8WTT0 213 aa5.72□□□□□ -1.49
RFFL-202ENST00000394597 KCNN1Q92952 543 aa5.72□□□□□ -1.49
RFFL-202ENST00000394597 C12orf43Q96C57 262 aaKnown RBP5.72□□□□□ -1.49
RFFL-202ENST00000394597 FCRL2Q96LA5 508 aaPredicted RBP5.72□□□□□ -1.49
RFFL-202ENST00000394597 PRICKLE1Q96MT3 831 aaPredicted RBP5.72□□□□□ -1.49
RFFL-202ENST00000394597 KCTD15Q96SI1 283 aaPredicted RBP5.72□□□□□ -1.49
RFFL-202ENST00000394597 APOL2Q9BQE5 337 aa5.72□□□□□ -1.49
RFFL-202ENST00000394597 SLC39A3Q9BRY0 314 aa5.72□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms