RNA–Protein interactions for RNA: ENST00000394456.9

GTF2F1-201, Transcript of general transcription factor IIF subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GTF2F1, Length 2,731 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF2F1-201ENST00000394456 CHN2P52757 468 aa13.55□□□□□ -0.24
GTF2F1-201ENST00000394456 USP46P62068 366 aa13.55□□□□□ -0.24
GTF2F1-201ENST00000394456 DSC1Q08554 894 aa13.55□□□□□ -0.24
GTF2F1-201ENST00000394456 AGKQ53H12 422 aa13.55□□□□□ -0.24
GTF2F1-201ENST00000394456 KDELC1Q6UW63 502 aa13.55□□□□□ -0.24
GTF2F1-201ENST00000394456 KLHDC8BQ8IXV7 354 aa13.55□□□□□ -0.24
GTF2F1-201ENST00000394456 ST13P4Q8IZP2 240 aaPredicted RBP13.55□□□□□ -0.24
GTF2F1-201ENST00000394456 PGAM4Q8N0Y7 254 aa13.55□□□□□ -0.24
GTF2F1-201ENST00000394456 METTL25Q8N6Q8 603 aa13.55□□□□□ -0.24
GTF2F1-201ENST00000394456 SMIM14Q96QK8 99 aa13.55□□□□□ -0.24
GTF2F1-201ENST00000394456 OCEL1Q9H607 264 aa13.55□□□□□ -0.24
GTF2F1-201ENST00000394456 NCKIPSDQ9NZQ3 722 aa13.55□□□□□ -0.24
GTF2F1-201ENST00000394456 AP4B1Q9Y6B7 739 aa13.55□□□□□ -0.24
GTF2F1-201ENST00000394456 SQORQ9Y6N5 450 aa13.55□□□□□ -0.24
GTF2F1-201ENST00000394456 TNFRSF10BO14763 440 aa13.55□□□□□ -0.24
GTF2F1-201ENST00000394456 EOMESO95936 686 aa13.55□□□□□ -0.24
GTF2F1-201ENST00000394456 TYMPP19971 482 aa13.55□□□□□ -0.24
GTF2F1-201ENST00000394456 ME2P23368 584 aa13.55□□□□□ -0.24
GTF2F1-201ENST00000394456 MYBPC1Q00872 1141 aa13.55□□□□□ -0.24
GTF2F1-201ENST00000394456 ROR2Q01974 943 aaKnown RBP13.55□□□□□ -0.24
GTF2F1-201ENST00000394456 PDAP1Q13442 181 aaKnown RBP13.55□□□□□ -0.24
GTF2F1-201ENST00000394456 GRM2Q14416 872 aa13.55□□□□□ -0.24
GTF2F1-201ENST00000394456 ZNF354CQ86Y25 554 aa13.55□□□□□ -0.24
GTF2F1-201ENST00000394456 PELI3Q8N2H9 469 aa13.55□□□□□ -0.24
GTF2F1-201ENST00000394456 RYBPQ8N488 228 aaPredicted RBP13.55□□□□□ -0.24
GTF2F1-201ENST00000394456 OR6P1Q8NGX9 317 aa13.55□□□□□ -0.24
GTF2F1-201ENST00000394456 LRGUKQ96M69 825 aa13.55□□□□□ -0.24
GTF2F1-201ENST00000394456 FAM193BQ96PV7 902 aaPredicted RBP13.55□□□□□ -0.24
GTF2F1-201ENST00000394456 PRPF19Q9UMS4 504 aaKnown RBP13.55□□□□□ -0.24
GTF2F1-201ENST00000394456 A0A1B0GTL3 188 aa13.55□□□□□ -0.24
GTF2F1-201ENST00000394456 SIX3O95343 332 aaPredicted RBP13.55□□□□□ -0.24
GTF2F1-201ENST00000394456 MMP2P08253 660 aa13.55□□□□□ -0.24
GTF2F1-201ENST00000394456 CCR1P32246 355 aa13.55□□□□□ -0.24
GTF2F1-201ENST00000394456 SLC12A2P55011 1212 aa13.55□□□□□ -0.24
GTF2F1-201ENST00000394456 ARPP19P56211 112 aa13.55□□□□□ -0.24
GTF2F1-201ENST00000394456 PSME3P61289 254 aa13.55□□□□□ -0.24
GTF2F1-201ENST00000394456 COG7P83436 770 aa13.55□□□□□ -0.24
GTF2F1-201ENST00000394456 PTK2BQ14289 1009 aa13.55□□□□□ -0.24
GTF2F1-201ENST00000394456 CUZD1Q86UP6 607 aa13.55□□□□□ -0.24
GTF2F1-201ENST00000394456 PGBD5Q8N414 524 aa13.55□□□□□ -0.24
GTF2F1-201ENST00000394456 OR52K2Q8NGK3 314 aa13.55□□□□□ -0.24
GTF2F1-201ENST00000394456 GRIN3AQ8TCU5 1115 aa13.55□□□□□ -0.24
GTF2F1-201ENST00000394456 HDAC10Q969S8 669 aa13.55□□□□□ -0.24
GTF2F1-201ENST00000394456 PSMG2Q969U7 264 aa13.55□□□□□ -0.24
GTF2F1-201ENST00000394456 MRPL57Q9BQC6 102 aaKnown RBP13.55□□□□□ -0.24
GTF2F1-201ENST00000394456 IL1RL2Q9HB29 575 aa13.55□□□□□ -0.24
GTF2F1-201ENST00000394456 PRORSD1PA6NEY8 169 aa13.54□□□□□ -0.24
GTF2F1-201ENST00000394456 TADA2AO75478 443 aa13.54□□□□□ -0.24
GTF2F1-201ENST00000394456 ATP5F1P24539 256 aaPredicted RBP13.54□□□□□ -0.24
GTF2F1-201ENST00000394456 RPL10P27635 214 aaKnown RBP13.54□□□□□ -0.24
GTF2F1-201ENST00000394456 SOX11P35716 441 aa13.54□□□□□ -0.24
GTF2F1-201ENST00000394456 PBX3P40426 434 aa13.54□□□□□ -0.24
GTF2F1-201ENST00000394456 GEMP55040 296 aa13.54□□□□□ -0.24
GTF2F1-201ENST00000394456 PTERQ96BW5 349 aa13.54□□□□□ -0.24
GTF2F1-201ENST00000394456 MAELQ96JY0 434 aaKnown RBP13.54□□□□□ -0.24
GTF2F1-201ENST00000394456 EFCAB1Q9HAE3 211 aa13.54□□□□□ -0.24
GTF2F1-201ENST00000394456 HMX1Q9NP08 348 aaPredicted RBP13.54□□□□□ -0.24
GTF2F1-201ENST00000394456 ABCC13Q9NSE7 274 aa13.54□□□□□ -0.24
GTF2F1-201ENST00000394456 MID2Q9UJV3 735 aa13.54□□□□□ -0.24
GTF2F1-201ENST00000394456 SCN5AQ14524 2016 aa13.54□□□□□ -0.24
GTF2F1-201ENST00000394456 COL4A4P53420 1690 aaPredicted RBP13.54□□□□□ -0.24
GTF2F1-201ENST00000394456 PRSS51A0A1B0GVH4 220 aa13.54□□□□□ -0.24
GTF2F1-201ENST00000394456 INPPL1O15357 1258 aa13.54□□□□□ -0.24
GTF2F1-201ENST00000394456 BCAS2O75934 225 aaPredicted RBP13.54□□□□□ -0.24
GTF2F1-201ENST00000394456 PSMD5Q16401 504 aa13.54□□□□□ -0.24
GTF2F1-201ENST00000394456 HECTD2Q5U5R9 776 aa13.54□□□□□ -0.24
GTF2F1-201ENST00000394456 LRRC8DQ7L1W4 858 aa13.54□□□□□ -0.24
GTF2F1-201ENST00000394456 AMIGO2Q86SJ2 522 aa13.54□□□□□ -0.24
GTF2F1-201ENST00000394456 TICAM1Q8IUC6 712 aa13.54□□□□□ -0.24
GTF2F1-201ENST00000394456 RTL3Q8N8U3 475 aaKnown RBP13.54□□□□□ -0.24
GTF2F1-201ENST00000394456 TMEM102Q8N9M5 508 aaPredicted RBP13.54□□□□□ -0.24
GTF2F1-201ENST00000394456 DBF4BQ8NFT6 615 aa13.54□□□□□ -0.24
GTF2F1-201ENST00000394456 PDCD6IPQ8WUM4 868 aaKnown RBP13.54□□□□□ -0.24
GTF2F1-201ENST00000394456 LRTOMTQ8WZ04 291 aa13.54□□□□□ -0.24
GTF2F1-201ENST00000394456 RPL10LQ96L21 214 aaKnown RBP13.54□□□□□ -0.24
GTF2F1-201ENST00000394456 NSUN5Q96P11 429 aaKnown RBP13.54□□□□□ -0.24
GTF2F1-201ENST00000394456 KCNA7Q96RP8 456 aa13.54□□□□□ -0.24
GTF2F1-201ENST00000394456 SERPINI1Q99574 410 aa13.54□□□□□ -0.24
GTF2F1-201ENST00000394456 CCDC28BQ9BUN5 200 aa13.54□□□□□ -0.24
GTF2F1-201ENST00000394456 VTI1BQ9UEU0 232 aa13.54□□□□□ -0.24
GTF2F1-201ENST00000394456 C7orf72A4D263 438 aa13.53□□□□□ -0.24
GTF2F1-201ENST00000394456 NBNO60934 754 aa13.53□□□□□ -0.24
GTF2F1-201ENST00000394456 TFAP2AP05549 437 aa13.53□□□□□ -0.24
GTF2F1-201ENST00000394456 FOXA1P55317 472 aa13.53□□□□□ -0.24
GTF2F1-201ENST00000394456 PFKPQ01813 784 aa13.53□□□□□ -0.24
GTF2F1-201ENST00000394456 SEMA3AQ14563 771 aa13.53□□□□□ -0.24
GTF2F1-201ENST00000394456 UGP2Q16851 508 aa13.53□□□□□ -0.24
GTF2F1-201ENST00000394456 VARS2Q5ST30 1063 aaKnown RBP13.53□□□□□ -0.24
GTF2F1-201ENST00000394456 REP15Q6BDI9 236 aa13.53□□□□□ -0.24
GTF2F1-201ENST00000394456 KIAA0930Q6ICG6 404 aaPredicted RBP13.53□□□□□ -0.24
GTF2F1-201ENST00000394456 POTEHQ6S545 545 aa13.53□□□□□ -0.24
GTF2F1-201ENST00000394456 ATAD1Q8NBU5 361 aa13.53□□□□□ -0.24
GTF2F1-201ENST00000394456 PIP4K2CQ8TBX8 421 aa13.53□□□□□ -0.24
GTF2F1-201ENST00000394456 IGSF8Q969P0 613 aa13.53□□□□□ -0.24
GTF2F1-201ENST00000394456 DNAJC1Q96KC8 554 aaKnown RBP13.53□□□□□ -0.24
GTF2F1-201ENST00000394456 GRIP2Q9C0E4 1043 aa13.53□□□□□ -0.24
GTF2F1-201ENST00000394456 GSTO2Q9H4Y5 243 aa13.53□□□□□ -0.24
GTF2F1-201ENST00000394456 NSMCE4AQ9NXX6 385 aa13.53□□□□□ -0.24
GTF2F1-201ENST00000394456 ARHGEF37A1IGU5 675 aa13.53□□□□□ -0.24
GTF2F1-201ENST00000394456 NT5C1B-RDH14C9J2C7 533 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms