RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 CNR2P34972 360 aa10.29□□□□□ -0.76
VPS53-202ENST00000389040 IL12RB1P42701 662 aa10.29□□□□□ -0.76
VPS53-202ENST00000389040 RENBPP51606 427 aa10.29□□□□□ -0.76
VPS53-202ENST00000389040 CDK16Q00536 496 aa10.29□□□□□ -0.76
VPS53-202ENST00000389040 NSUN2Q08J23 767 aaKnown RBP eCLIP10.29□□□□□ -0.76
VPS53-202ENST00000389040 SF3A3Q12874 501 aaKnown RBP eCLIP10.29□□□□□ -0.76
VPS53-202ENST00000389040 ELAVL3Q14576 367 aaKnown RBP10.29□□□□□ -0.76
VPS53-202ENST00000389040 GRM3Q14832 879 aa10.29□□□□□ -0.76
VPS53-202ENST00000389040 SLC1A5Q15758 541 aa10.29□□□□□ -0.76
VPS53-202ENST00000389040 HHATQ5VTY9 493 aa10.29□□□□□ -0.76
VPS53-202ENST00000389040 UNC5AQ6ZN44 842 aa10.29□□□□□ -0.76
VPS53-202ENST00000389040 Q6ZS52 159 aa10.29□□□□□ -0.76
VPS53-202ENST00000389040 RGS9BPQ6ZS82 235 aa10.29□□□□□ -0.76
VPS53-202ENST00000389040 SPATA21Q7Z572 469 aa10.29□□□□□ -0.76
VPS53-202ENST00000389040 PRPF39Q86UA1 669 aaKnown RBP10.29□□□□□ -0.76
VPS53-202ENST00000389040 SLC26A11Q86WA9 606 aa10.29□□□□□ -0.76
VPS53-202ENST00000389040 SFTPA1Q8IWL2 248 aa10.29□□□□□ -0.76
VPS53-202ENST00000389040 BBS5Q8N3I7 341 aa10.29□□□□□ -0.76
VPS53-202ENST00000389040 BANPQ8N9N5 519 aa10.29□□□□□ -0.76
VPS53-202ENST00000389040 OR7D4Q8NG98 312 aa10.29□□□□□ -0.76
VPS53-202ENST00000389040 FRS2Q8WU20 508 aa10.29□□□□□ -0.76
VPS53-202ENST00000389040 HDAC11Q96DB2 347 aa10.29□□□□□ -0.76
VPS53-202ENST00000389040 SIGLEC10Q96LC7 697 aa10.29□□□□□ -0.76
VPS53-202ENST00000389040 EBNA1BP2Q99848 306 aaKnown RBP10.29□□□□□ -0.76
VPS53-202ENST00000389040 ACTR5Q9H9F9 607 aaPredicted RBP10.29□□□□□ -0.76
VPS53-202ENST00000389040 SEPT10Q9P0V9 454 aa10.29□□□□□ -0.76
VPS53-202ENST00000389040 IPO11Q9UI26 975 aaKnown RBP10.29□□□□□ -0.76
VPS53-202ENST00000389040 GRID1Q9ULK0 1009 aa10.29□□□□□ -0.76
VPS53-202ENST00000389040 A0A1W2PQF6 199 aa10.28□□□□□ -0.76
VPS53-202ENST00000389040 FAM86C2PA6NEL3 165 aa10.28□□□□□ -0.76
VPS53-202ENST00000389040 TM9SF1O15321 606 aa10.28□□□□□ -0.76
VPS53-202ENST00000389040 RNASEH1O60930 286 aaKnown RBP10.28□□□□□ -0.76
VPS53-202ENST00000389040 MT-ND3P03897 115 aa10.28□□□□□ -0.76
VPS53-202ENST00000389040 EPHX1P07099 455 aa10.28□□□□□ -0.76
VPS53-202ENST00000389040 MLNP12872 115 aa10.28□□□□□ -0.76
VPS53-202ENST00000389040 SRCP12931 536 aa10.28□□□□□ -0.76
VPS53-202ENST00000389040 ACVRL1P37023 503 aa10.28□□□□□ -0.76
VPS53-202ENST00000389040 GARSP41250 739 aaKnown RBP10.28□□□□□ -0.76
VPS53-202ENST00000389040 GRIA1P42261 906 aa10.28□□□□□ -0.76
VPS53-202ENST00000389040 RECQLP46063 649 aaPredicted RBP10.28□□□□□ -0.76
VPS53-202ENST00000389040 ARF5P84085 180 aa10.28□□□□□ -0.76
VPS53-202ENST00000389040 ACTN3Q08043 901 aaPredicted RBP10.28□□□□□ -0.76
VPS53-202ENST00000389040 CCDC15Q0P6D6 951 aa10.28□□□□□ -0.76
VPS53-202ENST00000389040 WASHC5Q12768 1159 aa10.28□□□□□ -0.76
VPS53-202ENST00000389040 HNRNPDQ14103 355 aaKnown RBP10.28□□□□□ -0.76
VPS53-202ENST00000389040 DLG2Q15700 870 aa10.28□□□□□ -0.76
VPS53-202ENST00000389040 PDK4Q16654 411 aa10.28□□□□□ -0.76
VPS53-202ENST00000389040 LACTB2Q53H82 288 aaPredicted RBP10.28□□□□□ -0.76
VPS53-202ENST00000389040 RALGPS1Q5JS13 557 aa10.28□□□□□ -0.76
VPS53-202ENST00000389040 LVRNQ6Q4G3 990 aa10.28□□□□□ -0.76
VPS53-202ENST00000389040 RASSF3Q86WH2 238 aa10.28□□□□□ -0.76
VPS53-202ENST00000389040 LRRC6Q86X45 466 aa10.28□□□□□ -0.76
VPS53-202ENST00000389040 ZNF354CQ86Y25 554 aa10.28□□□□□ -0.76
VPS53-202ENST00000389040 CTAGE3PQ8IX95 158 aa10.28□□□□□ -0.76
VPS53-202ENST00000389040 MPP5Q8N3R9 675 aa10.28□□□□□ -0.76
VPS53-202ENST00000389040 ATPAF2Q8N5M1 289 aa10.28□□□□□ -0.76
VPS53-202ENST00000389040 NPWQ8N729 165 aa10.28□□□□□ -0.76
VPS53-202ENST00000389040 PPM1NQ8N819 430 aa10.28□□□□□ -0.76
VPS53-202ENST00000389040 TSTD1Q8NFU3 115 aa10.28□□□□□ -0.76
VPS53-202ENST00000389040 OR2T3Q8NH03 318 aa10.28□□□□□ -0.76
VPS53-202ENST00000389040 GSDMBQ8TAX9 411 aa10.28□□□□□ -0.76
VPS53-202ENST00000389040 CYB5D2Q8WUJ1 264 aa10.28□□□□□ -0.76
VPS53-202ENST00000389040 SORCS1Q8WY21 1168 aa10.28□□□□□ -0.76
VPS53-202ENST00000389040 NELL1Q92832 810 aa10.28□□□□□ -0.76
VPS53-202ENST00000389040 GRAMD1AQ96CP6 724 aa10.28□□□□□ -0.76
VPS53-202ENST00000389040 PDFQ9HBH1 243 aa10.28□□□□□ -0.76
VPS53-202ENST00000389040 CD248Q9HCU0 757 aa10.28□□□□□ -0.76
VPS53-202ENST00000389040 CACNA2D2Q9NY47 1150 aa10.28□□□□□ -0.76
VPS53-202ENST00000389040 UBA2Q9UBT2 640 aaPredicted RBP10.28□□□□□ -0.76
VPS53-202ENST00000389040 SLCO3A1Q9UIG8 710 aa10.28□□□□□ -0.76
VPS53-202ENST00000389040 ZNF180Q9UJW8 692 aa10.28□□□□□ -0.76
VPS53-202ENST00000389040 ARIH1Q9Y4X5 557 aaPredicted RBP10.28□□□□□ -0.76
VPS53-202ENST00000389040 MAD1L1Q9Y6D9 718 aa10.28□□□□□ -0.76
VPS53-202ENST00000389040 F5H423 210 aaPredicted RBP10.27□□□□□ -0.76
VPS53-202ENST00000389040 GOLGA8RI6L899 631 aa10.27□□□□□ -0.76
VPS53-202ENST00000389040 DFFAO00273 331 aa10.27□□□□□ -0.76
VPS53-202ENST00000389040 SNAP91O60641 907 aa10.27□□□□□ -0.76
VPS53-202ENST00000389040 MAFKO60675 156 aa10.27□□□□□ -0.76
VPS53-202ENST00000389040 ZNF217O75362 1048 aa10.27□□□□□ -0.76
VPS53-202ENST00000389040 GSRP00390 522 aa10.27□□□□□ -0.76
VPS53-202ENST00000389040 MAPK8P45983 427 aa10.27□□□□□ -0.76
VPS53-202ENST00000389040 CSNK1DP48730 415 aa10.27□□□□□ -0.76
VPS53-202ENST00000389040 SNRPD1P62314 119 aaKnown RBP10.27□□□□□ -0.76
VPS53-202ENST00000389040 DNAJC3Q13217 504 aa10.27□□□□□ -0.76
VPS53-202ENST00000389040 SEPT7Q16181 437 aaKnown RBP10.27□□□□□ -0.76
VPS53-202ENST00000389040 SPRED3Q2MJR0 410 aa10.27□□□□□ -0.76
VPS53-202ENST00000389040 PARP6Q2NL67 630 aa10.27□□□□□ -0.76
VPS53-202ENST00000389040 C9orf64Q5T6V5 341 aa10.27□□□□□ -0.76
VPS53-202ENST00000389040 FAM46CQ5VWP2 391 aa10.27□□□□□ -0.76
VPS53-202ENST00000389040 CGB2Q6NT52 195 aa10.27□□□□□ -0.76
VPS53-202ENST00000389040 LRRC8BQ6P9F7 803 aa10.27□□□□□ -0.76
VPS53-202ENST00000389040 TRPM8Q7Z2W7 1104 aa10.27□□□□□ -0.76
VPS53-202ENST00000389040 C11orf74Q86VG3 221 aa10.27□□□□□ -0.76
VPS53-202ENST00000389040 TP53INP2Q8IXH6 220 aa10.27□□□□□ -0.76
VPS53-202ENST00000389040 ZNF567Q8N184 647 aa10.27□□□□□ -0.76
VPS53-202ENST00000389040 PDCD7Q8N8D1 485 aaKnown RBP10.27□□□□□ -0.76
VPS53-202ENST00000389040 TCP10LQ8TDR4 215 aa10.27□□□□□ -0.76
VPS53-202ENST00000389040 RPL10LQ96L21 214 aaKnown RBP10.27□□□□□ -0.76
VPS53-202ENST00000389040 ACOX2Q99424 681 aa10.27□□□□□ -0.76
VPS53-202ENST00000389040 PLCD4Q9BRC7 762 aa10.27□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms