RNA–Protein interactions for RNA: ENST00000376634.8

VPS13A-204, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 10,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-204ENST00000376634 ZNF34Q8IZ26 560 aa12.52□□□□□ -0.41
VPS13A-204ENST00000376634 GMIPQ9P107 970 aa12.52□□□□□ -0.41
VPS13A-204ENST00000376634 DDX59Q5T1V6 619 aaKnown RBP eCLIP12.52□□□□□ -0.41
VPS13A-204ENST00000376634 PTCHD4Q6ZW05 846 aa12.52□□□□□ -0.41
VPS13A-204ENST00000376634 PHYKPLQ8IUZ5 450 aa12.52□□□□□ -0.41
VPS13A-204ENST00000376634 KATNAL2Q8IYT4 538 aa12.52□□□□□ -0.41
VPS13A-204ENST00000376634 GAL3ST3Q96A11 431 aa12.52□□□□□ -0.41
VPS13A-204ENST00000376634 OR12D3Q9UGF7 316 aa12.52□□□□□ -0.41
VPS13A-204ENST00000376634 MRPS33Q9Y291 106 aaKnown RBP12.52□□□□□ -0.41
VPS13A-204ENST00000376634 JCADQ9P266 1359 aa12.52□□□□□ -0.41
VPS13A-204ENST00000376634 UBR1Q8IWV7 1749 aa12.52□□□□□ -0.41
VPS13A-204ENST00000376634 SAGE2PA6NJ88 616 aa12.52□□□□□ -0.41
VPS13A-204ENST00000376634 ADH1CP00326 375 aa12.52□□□□□ -0.41
VPS13A-204ENST00000376634 ALOX5P09917 674 aa12.52□□□□□ -0.41
VPS13A-204ENST00000376634 DBTP11182 482 aaKnown RBP12.52□□□□□ -0.41
VPS13A-204ENST00000376634 BNIP2Q12982 314 aa12.52□□□□□ -0.41
VPS13A-204ENST00000376634 AP5B1Q2VPB7 878 aa12.52□□□□□ -0.41
VPS13A-204ENST00000376634 TMPRSS11AQ6ZMR5 421 aa12.52□□□□□ -0.41
VPS13A-204ENST00000376634 FBXO33Q7Z6M2 555 aa12.52□□□□□ -0.41
VPS13A-204ENST00000376634 RASSF5Q8WWW0 418 aa12.52□□□□□ -0.41
VPS13A-204ENST00000376634 FATE1Q969F0 183 aa12.52□□□□□ -0.41
VPS13A-204ENST00000376634 FCRL4Q96PJ5 515 aa12.52□□□□□ -0.41
VPS13A-204ENST00000376634 KIAA1683Q9H0B3 1180 aa12.52□□□□□ -0.41
VPS13A-204ENST00000376634 SEMA6BQ9H3T3 888 aa12.52□□□□□ -0.41
VPS13A-204ENST00000376634 HBS1LQ9Y450 684 aaKnown RBP12.52□□□□□ -0.41
VPS13A-204ENST00000376634 TIMM13Q9Y5L4 95 aaPredicted RBP12.52□□□□□ -0.41
VPS13A-204ENST00000376634 G3V2T6 193 aa12.52□□□□□ -0.41
VPS13A-204ENST00000376634 ERCC2P18074 760 aa12.52□□□□□ -0.41
VPS13A-204ENST00000376634 ARF3P61204 181 aaPredicted RBP12.52□□□□□ -0.41
VPS13A-204ENST00000376634 ARF1P84077 181 aaKnown RBP12.52□□□□□ -0.41
VPS13A-204ENST00000376634 IL18Q14116 193 aa12.52□□□□□ -0.41
VPS13A-204ENST00000376634 PGM5Q15124 567 aa12.52□□□□□ -0.41
VPS13A-204ENST00000376634 SULT1C3Q6IMI6 304 aa12.52□□□□□ -0.41
VPS13A-204ENST00000376634 DGCR14Q96DF8 476 aaKnown RBP12.52□□□□□ -0.41
VPS13A-204ENST00000376634 BAIAP2Q9UQB8 552 aa12.52□□□□□ -0.41
VPS13A-204ENST00000376634 PSMG1O95456 288 aa12.51□□□□□ -0.41
VPS13A-204ENST00000376634 AMPD1P23109 780 aa12.51□□□□□ -0.41
VPS13A-204ENST00000376634 MNDAP41218 407 aa12.51□□□□□ -0.41
VPS13A-204ENST00000376634 GRIA4P48058 902 aa12.51□□□□□ -0.41
VPS13A-204ENST00000376634 SERPINA13PQ6UXR4 307 aa12.51□□□□□ -0.41
VPS13A-204ENST00000376634 RASAL3Q86YV0 1011 aa12.51□□□□□ -0.41
VPS13A-204ENST00000376634 MINDY2Q8NBR6 621 aa12.51□□□□□ -0.41
VPS13A-204ENST00000376634 GATBO75879 557 aaKnown RBP12.51□□□□□ -0.41
VPS13A-204ENST00000376634 SAGP10523 405 aaPredicted RBP12.51□□□□□ -0.41
VPS13A-204ENST00000376634 FIGNQ5HY92 759 aa12.51□□□□□ -0.41
VPS13A-204ENST00000376634 DNAJB14Q8TBM8 379 aa12.51□□□□□ -0.41
VPS13A-204ENST00000376634 OSBPL11Q9BXB4 747 aa12.51□□□□□ -0.41
VPS13A-204ENST00000376634 ASB8Q9H765 288 aa12.51□□□□□ -0.41
VPS13A-204ENST00000376634 TIMMDC1Q9NPL8 285 aa12.51□□□□□ -0.41
VPS13A-204ENST00000376634 MRPL17Q9NRX2 175 aaKnown RBP12.51□□□□□ -0.41
VPS13A-204ENST00000376634 LRATO95237 230 aa12.51□□□□□ -0.41
VPS13A-204ENST00000376634 ZNF730Q6ZMV8 503 aa12.51□□□□□ -0.41
VPS13A-204ENST00000376634 RFT1Q96AA3 541 aa12.51□□□□□ -0.41
VPS13A-204ENST00000376634 CITED4Q96RK1 184 aa12.51□□□□□ -0.41
VPS13A-204ENST00000376634 MIR1-1HGQ9H1L0 117 aa12.51□□□□□ -0.41
VPS13A-204ENST00000376634 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP12.51□□□□□ -0.41
VPS13A-204ENST00000376634 LACTBL1A8MY62 500 aa12.51□□□□□ -0.41
VPS13A-204ENST00000376634 SLC35G4P0C7Q5 338 aa12.51□□□□□ -0.41
VPS13A-204ENST00000376634 PSEN1P49768 467 aa12.51□□□□□ -0.41
VPS13A-204ENST00000376634 ALDH5A1P51649 535 aaPredicted RBP12.51□□□□□ -0.41
VPS13A-204ENST00000376634 LY6KQ17RY6 165 aa12.51□□□□□ -0.41
VPS13A-204ENST00000376634 ZNF606Q8WXB4 792 aa12.51□□□□□ -0.41
VPS13A-204ENST00000376634 OR52E6Q96RD3 313 aa12.51□□□□□ -0.41
VPS13A-204ENST00000376634 C2CD2Q9Y426 696 aa12.51□□□□□ -0.41
VPS13A-204ENST00000376634 MRPL42Q9Y6G3 142 aaKnown RBP12.51□□□□□ -0.41
VPS13A-204ENST00000376634 TRPM6Q9BX84 2022 aa12.51□□□□□ -0.41
VPS13A-204ENST00000376634 SEC16AO15027 2179 aa12.51□□□□□ -0.41
VPS13A-204ENST00000376634 ZNF432O94892 652 aa12.51□□□□□ -0.41
VPS13A-204ENST00000376634 SDC2P34741 201 aa12.51□□□□□ -0.41
VPS13A-204ENST00000376634 STXBP5Q5T5C0 1151 aa12.51□□□□□ -0.41
VPS13A-204ENST00000376634 TEFMQ96QE5 360 aaKnown RBP12.51□□□□□ -0.41
VPS13A-204ENST00000376634 DNAJC5BQ9UF47 199 aa12.51□□□□□ -0.41
VPS13A-204ENST00000376634 CHST10O43529 356 aa12.51□□□□□ -0.41
VPS13A-204ENST00000376634 KRT36O76013 467 aa12.51□□□□□ -0.41
VPS13A-204ENST00000376634 OGNP20774 298 aaKnown RBP12.51□□□□□ -0.41
VPS13A-204ENST00000376634 ZFP69Q49AA0 526 aa12.51□□□□□ -0.41
VPS13A-204ENST00000376634 ANXA8L1Q5VT79 327 aa12.51□□□□□ -0.41
VPS13A-204ENST00000376634 KLHL35Q6PF15 583 aa12.51□□□□□ -0.41
VPS13A-204ENST00000376634 KIAA1324Q6UXG2 1013 aaKnown RBP12.51□□□□□ -0.41
VPS13A-204ENST00000376634 CST11Q9H112 138 aa12.51□□□□□ -0.41
VPS13A-204ENST00000376634 SEMA3GQ9NS98 782 aa12.51□□□□□ -0.41
VPS13A-204ENST00000376634 DHRS12A0PJE2 317 aa12.51□□□□□ -0.41
VPS13A-204ENST00000376634 CST1P01037 141 aa12.51□□□□□ -0.41
VPS13A-204ENST00000376634 ARP10275 920 aa12.51□□□□□ -0.41
VPS13A-204ENST00000376634 ANTXR2P58335 489 aa12.51□□□□□ -0.41
VPS13A-204ENST00000376634 SUZ12Q15022 739 aaKnown RBP12.51□□□□□ -0.41
VPS13A-204ENST00000376634 CLUHO75153 1309 aa12.51□□□□□ -0.41
VPS13A-204ENST00000376634 TDRD6O60522 2096 aaKnown RBP12.51□□□□□ -0.41
VPS13A-204ENST00000376634 MBD5Q9P267 1494 aa12.51□□□□□ -0.41
VPS13A-204ENST00000376634 KMOO15229 486 aa12.51□□□□□ -0.41
VPS13A-204ENST00000376634 SLC7A2P52569 658 aa12.51□□□□□ -0.41
VPS13A-204ENST00000376634 TYSND1Q2T9J0 566 aa12.51□□□□□ -0.41
VPS13A-204ENST00000376634 TCEAL6Q6IPX3 200 aa12.51□□□□□ -0.41
VPS13A-204ENST00000376634 RTL4Q6ZR62 310 aa12.51□□□□□ -0.41
VPS13A-204ENST00000376634 C4orf19Q8IY42 314 aa12.51□□□□□ -0.41
VPS13A-204ENST00000376634 REPS2Q8NFH8 660 aa12.51□□□□□ -0.41
VPS13A-204ENST00000376634 CCNB1IP1Q9NPC3 277 aa12.51□□□□□ -0.41
VPS13A-204ENST00000376634 PPP2R2BQ00005 443 aa12.5□□□□□ -0.41
VPS13A-204ENST00000376634 RFTN2Q52LD8 501 aaPredicted RBP12.5□□□□□ -0.41
VPS13A-204ENST00000376634 DENND5AQ6IQ26 1287 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms