RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 KLHL17Q6TDP4 642 aa11.48□□□□□ -0.57
PTPRF-203ENST00000372407 ECHDC2Q86YB7 292 aa11.48□□□□□ -0.57
PTPRF-203ENST00000372407 ADCY4Q8NFM4 1077 aa11.48□□□□□ -0.57
PTPRF-203ENST00000372407 HELQQ8TDG4 1101 aa11.48□□□□□ -0.57
PTPRF-203ENST00000372407 ELMO1Q92556 727 aa11.48□□□□□ -0.57
PTPRF-203ENST00000372407 VPS35Q96QK1 796 aa11.48□□□□□ -0.57
PTPRF-203ENST00000372407 GINS4Q9BRT9 223 aa11.48□□□□□ -0.57
PTPRF-203ENST00000372407 MCM8Q9UJA3 840 aa11.48□□□□□ -0.57
PTPRF-203ENST00000372407 A0A088AWK7 358 aa11.47□□□□□ -0.57
PTPRF-203ENST00000372407 QSOX1O00391 747 aa11.47□□□□□ -0.57
PTPRF-203ENST00000372407 TGDSO95455 350 aa11.47□□□□□ -0.57
PTPRF-203ENST00000372407 CST1P01037 141 aa11.47□□□□□ -0.57
PTPRF-203ENST00000372407 ITGA2P17301 1181 aa11.47□□□□□ -0.57
PTPRF-203ENST00000372407 ZNF10P21506 573 aaPredicted RBP11.47□□□□□ -0.57
PTPRF-203ENST00000372407 ZNF280AP59817 542 aaPredicted RBP11.47□□□□□ -0.57
PTPRF-203ENST00000372407 PTP4A2Q12974 167 aa11.47□□□□□ -0.57
PTPRF-203ENST00000372407 TEX44Q53QW1 395 aa11.47□□□□□ -0.57
PTPRF-203ENST00000372407 CACTIN-AS1Q8N1I8 211 aa11.47□□□□□ -0.57
PTPRF-203ENST00000372407 MYLPFQ96A32 169 aa11.47□□□□□ -0.57
PTPRF-203ENST00000372407 DGCR14Q96DF8 476 aaKnown RBP11.47□□□□□ -0.57
PTPRF-203ENST00000372407 CSPG4P5Q96PW8 444 aa11.47□□□□□ -0.57
PTPRF-203ENST00000372407 ST6GALNAC4Q9H4F1 302 aa11.47□□□□□ -0.57
PTPRF-203ENST00000372407 WDR55Q9H6Y2 383 aaPredicted RBP11.47□□□□□ -0.57
PTPRF-203ENST00000372407 ATP13A3Q9H7F0 1226 aa11.47□□□□□ -0.57
PTPRF-203ENST00000372407 GLOD4Q9HC38 313 aa11.47□□□□□ -0.57
PTPRF-203ENST00000372407 SALL4Q9UJQ4 1053 aa11.47□□□□□ -0.57
PTPRF-203ENST00000372407 ZNF232Q9UNY5 417 aa11.47□□□□□ -0.57
PTPRF-203ENST00000372407 SLC28A1O00337 649 aa11.47□□□□□ -0.57
PTPRF-203ENST00000372407 PQBP1O60828 265 aaKnown RBP11.47□□□□□ -0.57
PTPRF-203ENST00000372407 UQCRBP14927 111 aa11.47□□□□□ -0.57
PTPRF-203ENST00000372407 HDCP19113 662 aa11.47□□□□□ -0.57
PTPRF-203ENST00000372407 POLR2EP19388 210 aaKnown RBP11.47□□□□□ -0.57
PTPRF-203ENST00000372407 CPSF6Q16630 551 aaKnown RBP eCLIP11.47□□□□□ -0.57
PTPRF-203ENST00000372407 SLC5A9Q2M3M2 681 aa11.47□□□□□ -0.57
PTPRF-203ENST00000372407 TIGD2Q4W5G0 525 aa11.47□□□□□ -0.57
PTPRF-203ENST00000372407 RBM44Q6ZP01 1051 aaKnown RBP11.47□□□□□ -0.57
PTPRF-203ENST00000372407 RD3Q7Z3Z2 195 aa11.47□□□□□ -0.57
PTPRF-203ENST00000372407 FAM35AQ86V20 835 aa11.47□□□□□ -0.57
PTPRF-203ENST00000372407 FITM2Q8N6M3 262 aa11.47□□□□□ -0.57
PTPRF-203ENST00000372407 ZNF540Q8NDQ6 660 aa11.47□□□□□ -0.57
PTPRF-203ENST00000372407 KBTBD8Q8NFY9 601 aa11.47□□□□□ -0.57
PTPRF-203ENST00000372407 CPT1BQ92523 772 aa11.47□□□□□ -0.57
PTPRF-203ENST00000372407 HOPXQ9BPY8 73 aaPredicted RBP11.47□□□□□ -0.57
PTPRF-203ENST00000372407 SLITRK2Q9H156 845 aa11.47□□□□□ -0.57
PTPRF-203ENST00000372407 THG1LQ9NWX6 298 aaKnown RBP11.47□□□□□ -0.57
PTPRF-203ENST00000372407 EHD3Q9NZN3 535 aa11.47□□□□□ -0.57
PTPRF-203ENST00000372407 CRNNQ9UBG3 495 aaPredicted RBP11.47□□□□□ -0.57
PTPRF-203ENST00000372407 RSL24D1Q9UHA3 163 aaKnown RBP11.47□□□□□ -0.57
PTPRF-203ENST00000372407 EGFL7Q9UHF1 273 aa11.47□□□□□ -0.57
PTPRF-203ENST00000372407 HBS1LQ9Y450 684 aaKnown RBP11.47□□□□□ -0.57
PTPRF-203ENST00000372407 TCRBV7S2A1N4TA0A589 114 aa11.47□□□□□ -0.57
PTPRF-203ENST00000372407 TM7SF2O76062 418 aa11.47□□□□□ -0.57
PTPRF-203ENST00000372407 CSH1P0DML2 217 aa11.47□□□□□ -0.57
PTPRF-203ENST00000372407 CSH2P0DML3 217 aa11.47□□□□□ -0.57
PTPRF-203ENST00000372407 ACADMP11310 421 aa11.47□□□□□ -0.57
PTPRF-203ENST00000372407 GTF2E2P29084 291 aaKnown RBP11.47□□□□□ -0.57
PTPRF-203ENST00000372407 NTSP30990 170 aa11.47□□□□□ -0.57
PTPRF-203ENST00000372407 PRKAG1P54619 331 aa11.47□□□□□ -0.57
PTPRF-203ENST00000372407 SMIM11AP58511 58 aa11.47□□□□□ -0.57
PTPRF-203ENST00000372407 PTSQ03393 145 aa11.47□□□□□ -0.57
PTPRF-203ENST00000372407 TPGS1Q6ZTW0 290 aa11.47□□□□□ -0.57
PTPRF-203ENST00000372407 MON1AQ86VX9 555 aa11.47□□□□□ -0.57
PTPRF-203ENST00000372407 GATAD2AQ86YP4 633 aa11.47□□□□□ -0.57
PTPRF-203ENST00000372407 SPATA6LQ8N4H0 392 aa11.47□□□□□ -0.57
PTPRF-203ENST00000372407 TOP6BLQ8N6T0 577 aa11.47□□□□□ -0.57
PTPRF-203ENST00000372407 UXS1Q8NBZ7 420 aa11.47□□□□□ -0.57
PTPRF-203ENST00000372407 RBM15BQ8NDT2 890 aaKnown RBP11.47□□□□□ -0.57
PTPRF-203ENST00000372407 ANKRD49Q8WVL7 239 aa11.47□□□□□ -0.57
PTPRF-203ENST00000372407 MYDGFQ969H8 173 aa11.47□□□□□ -0.57
PTPRF-203ENST00000372407 REXO5Q96IC2 774 aaKnown RBP11.47□□□□□ -0.57
PTPRF-203ENST00000372407 C7orf26Q96N11 449 aa11.47□□□□□ -0.57
PTPRF-203ENST00000372407 EPB41L1Q9H4G0 881 aa11.47□□□□□ -0.57
PTPRF-203ENST00000372407 ZNHIT2Q9UHR6 403 aa11.47□□□□□ -0.57
PTPRF-203ENST00000372407 SHOX2O60902 331 aaPredicted RBP11.47□□□□□ -0.57
PTPRF-203ENST00000372407 XYLBO75191 536 aa11.47□□□□□ -0.57
PTPRF-203ENST00000372407 GBE1Q04446 702 aa11.47□□□□□ -0.57
PTPRF-203ENST00000372407 SH3BP5LQ7L8J4 393 aa11.47□□□□□ -0.57
PTPRF-203ENST00000372407 TBC1D21Q8IYX1 336 aa11.47□□□□□ -0.57
PTPRF-203ENST00000372407 PLD5Q8N7P1 536 aa11.47□□□□□ -0.57
PTPRF-203ENST00000372407 OR4L1Q8NH43 312 aa11.47□□□□□ -0.57
PTPRF-203ENST00000372407 ZHX1-C8orf76Q96EF9 292 aa11.47□□□□□ -0.57
PTPRF-203ENST00000372407 Q96MT0 163 aa11.47□□□□□ -0.57
PTPRF-203ENST00000372407 TTYH3Q9C0H2 523 aa11.47□□□□□ -0.57
PTPRF-203ENST00000372407 ARHGEF3Q9NR81 526 aa11.47□□□□□ -0.57
PTPRF-203ENST00000372407 ZNF624Q9P2J8 865 aaPredicted RBP11.47□□□□□ -0.57
PTPRF-203ENST00000372407 ITGB1BP2Q9UKP3 347 aa11.47□□□□□ -0.57
PTPRF-203ENST00000372407 SAMHD1Q9Y3Z3 626 aaKnown RBP11.47□□□□□ -0.57
PTPRF-203ENST00000372407 KCNE2Q9Y6J6 123 aa11.47□□□□□ -0.57
PTPRF-203ENST00000372407 SMIM10L2AP0DMW4 78 aa11.46□□□□□ -0.57
PTPRF-203ENST00000372407 SMIM10L2BP0DMW5 78 aa11.46□□□□□ -0.57
PTPRF-203ENST00000372407 CES1P23141 567 aa11.46□□□□□ -0.57
PTPRF-203ENST00000372407 CDKN2BP42772 138 aa11.46□□□□□ -0.57
PTPRF-203ENST00000372407 KCTD19Q17RG1 926 aaPredicted RBP11.46□□□□□ -0.57
PTPRF-203ENST00000372407 CERCAMQ5T4B2 595 aa11.46□□□□□ -0.57
PTPRF-203ENST00000372407 ABHD15Q6UXT9 468 aa11.46□□□□□ -0.57
PTPRF-203ENST00000372407 MTMR14Q8NCE2 650 aa11.46□□□□□ -0.57
PTPRF-203ENST00000372407 ZNF671Q8TAW3 534 aa11.46□□□□□ -0.57
PTPRF-203ENST00000372407 PHF10Q8WUB8 498 aaKnown RBP11.46□□□□□ -0.57
PTPRF-203ENST00000372407 OMA1Q96E52 524 aa11.46□□□□□ -0.57
PTPRF-203ENST00000372407 PANX1Q96RD7 426 aa11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms