RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 SSNA1O43805 119 aa19.6■□□□□ 0.73
CCDC88B-202ENST00000356786 LRCH4O75427 683 aa19.6■□□□□ 0.73
CCDC88B-202ENST00000356786 RPS12P25398 132 aaKnown RBP19.6■□□□□ 0.73
CCDC88B-202ENST00000356786 APOBEC3HQ6NTF7 200 aaKnown RBP19.6■□□□□ 0.73
CCDC88B-202ENST00000356786 MKL1Q969V6 931 aa19.6■□□□□ 0.73
CCDC88B-202ENST00000356786 H6PDO95479 791 aa19.6■□□□□ 0.73
CCDC88B-202ENST00000356786 FGFR1P11362 822 aa19.6■□□□□ 0.73
CCDC88B-202ENST00000356786 ZCCHC8Q6NZY4 707 aaKnown RBP19.6■□□□□ 0.73
CCDC88B-202ENST00000356786 PHF10Q8WUB8 498 aaKnown RBP19.6■□□□□ 0.73
CCDC88B-202ENST00000356786 PANX3Q96QZ0 392 aa19.6■□□□□ 0.73
CCDC88B-202ENST00000356786 SLC7A5P2Q9GIP4 190 aa19.6■□□□□ 0.73
CCDC88B-202ENST00000356786 ADGRE2Q9UHX3 823 aa19.6■□□□□ 0.73
CCDC88B-202ENST00000356786 S100A9P06702 114 aaKnown RBP19.6■□□□□ 0.73
CCDC88B-202ENST00000356786 GRK4P32298 578 aa19.6■□□□□ 0.73
CCDC88B-202ENST00000356786 RHBDL3P58872 404 aa19.6■□□□□ 0.73
CCDC88B-202ENST00000356786 SEMA5AQ13591 1074 aa19.6■□□□□ 0.73
CCDC88B-202ENST00000356786 GRIK5Q16478 980 aa19.6■□□□□ 0.73
CCDC88B-202ENST00000356786 ASTE1Q2TB18 679 aaPredicted RBP19.6■□□□□ 0.73
CCDC88B-202ENST00000356786 STK40Q8N2I9 435 aa19.6■□□□□ 0.73
CCDC88B-202ENST00000356786 ANKRD52Q8NB46 1076 aa19.6■□□□□ 0.73
CCDC88B-202ENST00000356786 SNCAIPQ9Y6H5 919 aa19.6■□□□□ 0.73
CCDC88B-202ENST00000356786 ITGB5P18084 799 aa19.59■□□□□ 0.73
CCDC88B-202ENST00000356786 C6orf89Q6UWU4 347 aa19.59■□□□□ 0.73
CCDC88B-202ENST00000356786 GPR180Q86V85 440 aa19.59■□□□□ 0.73
CCDC88B-202ENST00000356786 HELQQ8TDG4 1101 aa19.59■□□□□ 0.73
CCDC88B-202ENST00000356786 Q96MT0 163 aa19.59■□□□□ 0.73
CCDC88B-202ENST00000356786 COQ10BQ9H8M1 238 aa19.59■□□□□ 0.73
CCDC88B-202ENST00000356786 CYP7B1O75881 506 aa19.59■□□□□ 0.73
CCDC88B-202ENST00000356786 BDNFP23560 247 aa19.59■□□□□ 0.73
CCDC88B-202ENST00000356786 IFNGR2P38484 337 aa19.59■□□□□ 0.73
CCDC88B-202ENST00000356786 STAT5AP42229 794 aa19.59■□□□□ 0.73
CCDC88B-202ENST00000356786 TPTEP56180 551 aa19.59■□□□□ 0.73
CCDC88B-202ENST00000356786 CCNIQ14094 377 aa19.59■□□□□ 0.73
CCDC88B-202ENST00000356786 ADGRE1Q14246 886 aa19.59■□□□□ 0.73
CCDC88B-202ENST00000356786 CPSF7Q8N684 471 aaKnown RBP19.59■□□□□ 0.73
CCDC88B-202ENST00000356786 PDPRQ8NCN5 879 aa19.59■□□□□ 0.73
CCDC88B-202ENST00000356786 COLEC11Q9BWP8 271 aa19.59■□□□□ 0.73
CCDC88B-202ENST00000356786 FBXO44Q9H4M3 255 aa19.59■□□□□ 0.73
CCDC88B-202ENST00000356786 LYVE1Q9Y5Y7 322 aa19.59■□□□□ 0.73
CCDC88B-202ENST00000356786 E7ENX8 843 aa19.59■□□□□ 0.73
CCDC88B-202ENST00000356786 ANXA5P08758 320 aa19.59■□□□□ 0.73
CCDC88B-202ENST00000356786 THRBP10828 461 aa19.59■□□□□ 0.73
CCDC88B-202ENST00000356786 DGKAP23743 735 aa19.59■□□□□ 0.73
CCDC88B-202ENST00000356786 CNTN2Q02246 1040 aa19.59■□□□□ 0.73
CCDC88B-202ENST00000356786 GBE1Q04446 702 aa19.59■□□□□ 0.73
CCDC88B-202ENST00000356786 PTP4A2Q12974 167 aa19.59■□□□□ 0.73
CCDC88B-202ENST00000356786 FAM43BQ6ZT52 329 aaPredicted RBP19.59■□□□□ 0.73
CCDC88B-202ENST00000356786 VSIG10LQ86VR7 867 aa19.59■□□□□ 0.73
CCDC88B-202ENST00000356786 ARMC8Q8IUR7 673 aa19.59■□□□□ 0.73
CCDC88B-202ENST00000356786 ZNF781Q8N8C0 355 aa19.59■□□□□ 0.73
CCDC88B-202ENST00000356786 C12orf29Q8N999 325 aa19.59■□□□□ 0.73
CCDC88B-202ENST00000356786 PPP1R14BQ96C90 147 aa19.59■□□□□ 0.73
CCDC88B-202ENST00000356786 CENPNQ96H22 339 aaPredicted RBP19.59■□□□□ 0.73
CCDC88B-202ENST00000356786 ADI1Q9BV57 179 aa19.59■□□□□ 0.73
CCDC88B-202ENST00000356786 GATA5Q9BWX5 397 aaPredicted RBP19.59■□□□□ 0.73
CCDC88B-202ENST00000356786 POLE3Q9NRF9 147 aa19.59■□□□□ 0.73
CCDC88B-202ENST00000356786 SSR3Q9UNL2 185 aa19.59■□□□□ 0.73
CCDC88B-202ENST00000356786 MED1Q15648 1581 aaPredicted RBP19.59■□□□□ 0.73
CCDC88B-202ENST00000356786 IQCJ-SCHIP1C9J366 451 aaPredicted RBP19.59■□□□□ 0.73
CCDC88B-202ENST00000356786 ZBTB14O43829 449 aa19.59■□□□□ 0.73
CCDC88B-202ENST00000356786 OR6B1O95007 311 aa19.59■□□□□ 0.73
CCDC88B-202ENST00000356786 SEMA3DO95025 777 aa19.59■□□□□ 0.73
CCDC88B-202ENST00000356786 GTF2A2P52657 109 aa19.59■□□□□ 0.73
CCDC88B-202ENST00000356786 IL18R1Q13478 541 aa19.59■□□□□ 0.73
CCDC88B-202ENST00000356786 LSM12Q3MHD2 195 aaKnown RBP19.59■□□□□ 0.73
CCDC88B-202ENST00000356786 VPS26BQ4G0F5 336 aa19.59■□□□□ 0.73
CCDC88B-202ENST00000356786 FAM180AQ6UWF9 173 aa19.59■□□□□ 0.73
CCDC88B-202ENST00000356786 SLC47A1Q96FL8 570 aa19.59■□□□□ 0.73
CCDC88B-202ENST00000356786 EBF4Q9BQW3 602 aa19.59■□□□□ 0.73
CCDC88B-202ENST00000356786 PREBQ9HCU5 417 aa19.59■□□□□ 0.73
CCDC88B-202ENST00000356786 TLR8Q9NR97 1041 aaKnown RBP19.59■□□□□ 0.73
CCDC88B-202ENST00000356786 NPR3P17342 541 aa19.58■□□□□ 0.73
CCDC88B-202ENST00000356786 KPNA1P52294 538 aaPredicted RBP19.58■□□□□ 0.73
CCDC88B-202ENST00000356786 NRG1Q02297 640 aaPredicted RBP19.58■□□□□ 0.73
CCDC88B-202ENST00000356786 NADK2Q4G0N4 442 aa19.58■□□□□ 0.73
CCDC88B-202ENST00000356786 ATAD3BQ5T9A4 648 aa19.58■□□□□ 0.73
CCDC88B-202ENST00000356786 POTEHQ6S545 545 aa19.58■□□□□ 0.73
CCDC88B-202ENST00000356786 ANKS1BQ7Z6G8 1248 aa19.58■□□□□ 0.73
CCDC88B-202ENST00000356786 HDAC10Q969S8 669 aa19.58■□□□□ 0.73
CCDC88B-202ENST00000356786 OR52E6Q96RD3 313 aa19.58■□□□□ 0.73
CCDC88B-202ENST00000356786 PRDX6P30041 224 aa19.58■□□□□ 0.73
CCDC88B-202ENST00000356786 IDH3AP50213 366 aa19.58■□□□□ 0.73
CCDC88B-202ENST00000356786 PLD5Q8N7P1 536 aa19.58■□□□□ 0.73
CCDC88B-202ENST00000356786 ANKRD49Q8WVL7 239 aa19.58■□□□□ 0.73
CCDC88B-202ENST00000356786 TAMM41Q96BW9 452 aa19.58■□□□□ 0.73
CCDC88B-202ENST00000356786 DNAAF2Q9NVR5 837 aaKnown RBP19.58■□□□□ 0.73
CCDC88B-202ENST00000356786 RPS6KB2Q9UBS0 482 aa19.58■□□□□ 0.73
CCDC88B-202ENST00000356786 ZNHIT2Q9UHR6 403 aa19.58■□□□□ 0.73
CCDC88B-202ENST00000356786 POMCP01189 267 aa19.58■□□□□ 0.72
CCDC88B-202ENST00000356786 OR56A5P0C7T3 313 aa19.58■□□□□ 0.72
CCDC88B-202ENST00000356786 PIRTP0C851 137 aa19.58■□□□□ 0.72
CCDC88B-202ENST00000356786 TPSB2P20231 275 aa19.58■□□□□ 0.72
CCDC88B-202ENST00000356786 MTHFRP42898 656 aa19.58■□□□□ 0.72
CCDC88B-202ENST00000356786 OLR1P78380 273 aa19.58■□□□□ 0.72
CCDC88B-202ENST00000356786 TPSAB1Q15661 275 aa19.58■□□□□ 0.72
CCDC88B-202ENST00000356786 GALNT5Q7Z7M9 940 aa19.58■□□□□ 0.72
CCDC88B-202ENST00000356786 RALGPS2Q86X27 583 aaPredicted RBP19.58■□□□□ 0.72
CCDC88B-202ENST00000356786 TCAIMQ8N3R3 496 aa19.58■□□□□ 0.72
CCDC88B-202ENST00000356786 PTGFRNQ9P2B2 879 aa19.58■□□□□ 0.72
CCDC88B-202ENST00000356786 SPACA6W5XKT8 324 aa19.58■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms