RNA–Protein interactions for RNA: ENST00000347401.7

COL6A3-202, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,625 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-202ENST00000347401 CDH19Q9H159 772 aa13.36□□□□□ -0.27
COL6A3-202ENST00000347401 SEMA6AQ9H2E6 1030 aa13.36□□□□□ -0.27
COL6A3-202ENST00000347401 ABCG2Q9UNQ0 655 aa13.36□□□□□ -0.27
COL6A3-202ENST00000347401 PLCL2Q9UPR0 1127 aa13.36□□□□□ -0.27
COL6A3-202ENST00000347401 BTN3A1O00481 513 aa13.36□□□□□ -0.27
COL6A3-202ENST00000347401 RHOCP08134 193 aa13.36□□□□□ -0.27
COL6A3-202ENST00000347401 RARAP10276 462 aa13.36□□□□□ -0.27
COL6A3-202ENST00000347401 NPTX2P47972 431 aa13.36□□□□□ -0.27
COL6A3-202ENST00000347401 IST1P53990 364 aa13.36□□□□□ -0.27
COL6A3-202ENST00000347401 GRB10Q13322 594 aa13.36□□□□□ -0.27
COL6A3-202ENST00000347401 E2F2Q14209 437 aa13.36□□□□□ -0.27
COL6A3-202ENST00000347401 MED22Q15528 200 aa13.36□□□□□ -0.27
COL6A3-202ENST00000347401 SMAD1Q15797 465 aaKnown RBP13.36□□□□□ -0.27
COL6A3-202ENST00000347401 ZNF606Q8WXB4 792 aa13.36□□□□□ -0.27
COL6A3-202ENST00000347401 RUSC1Q9BVN2 902 aa13.36□□□□□ -0.27
COL6A3-202ENST00000347401 ZNF180Q9UJW8 692 aa13.36□□□□□ -0.27
COL6A3-202ENST00000347401 CDH7Q9ULB5 785 aa13.36□□□□□ -0.27
COL6A3-202ENST00000347401 PRODHO43272 600 aa13.36□□□□□ -0.27
COL6A3-202ENST00000347401 MVKQ03426 396 aa13.36□□□□□ -0.27
COL6A3-202ENST00000347401 ANO7Q6IWH7 933 aa13.36□□□□□ -0.27
COL6A3-202ENST00000347401 AFTPHQ6ULP2 937 aa13.36□□□□□ -0.27
COL6A3-202ENST00000347401 ZNF410Q86VK4 478 aa13.36□□□□□ -0.27
COL6A3-202ENST00000347401 GATAD2AQ86YP4 633 aa13.36□□□□□ -0.27
COL6A3-202ENST00000347401 ZNF451Q9Y4E5 1061 aa13.36□□□□□ -0.27
COL6A3-202ENST00000347401 FAM205AQ6ZU69 1335 aa13.36□□□□□ -0.27
COL6A3-202ENST00000347401 PLOD2O00469 737 aa13.36□□□□□ -0.27
COL6A3-202ENST00000347401 CCNYL2Q5T2Q4 361 aa13.36□□□□□ -0.27
COL6A3-202ENST00000347401 CHST15Q7LFX5 561 aaPredicted RBP13.36□□□□□ -0.27
COL6A3-202ENST00000347401 ZNF614Q8N883 585 aa13.36□□□□□ -0.27
COL6A3-202ENST00000347401 MGME1Q9BQP7 344 aa13.36□□□□□ -0.27
COL6A3-202ENST00000347401 CDHR5Q9HBB8 845 aa13.36□□□□□ -0.27
COL6A3-202ENST00000347401 XPNPEP3Q9NQH7 507 aa13.36□□□□□ -0.27
COL6A3-202ENST00000347401 PCDHGB1Q9Y5G3 927 aa13.36□□□□□ -0.27
COL6A3-202ENST00000347401 NRP2O60462 931 aa13.36□□□□□ -0.27
COL6A3-202ENST00000347401 NOL4O94818 638 aa13.36□□□□□ -0.27
COL6A3-202ENST00000347401 IGSF6O95976 241 aa13.36□□□□□ -0.27
COL6A3-202ENST00000347401 ENO2P09104 434 aaPredicted RBP13.36□□□□□ -0.27
COL6A3-202ENST00000347401 FDPSP14324 419 aaKnown RBP13.36□□□□□ -0.27
COL6A3-202ENST00000347401 ATF4P18848 351 aaPredicted RBP13.36□□□□□ -0.27
COL6A3-202ENST00000347401 CCNCP24863 283 aa13.36□□□□□ -0.27
COL6A3-202ENST00000347401 MBTD1Q05BQ5 628 aa13.36□□□□□ -0.27
COL6A3-202ENST00000347401 GRSF1Q12849 480 aaKnown RBP eCLIP13.36□□□□□ -0.27
COL6A3-202ENST00000347401 GLB1L3Q8NCI6 653 aaPredicted RBP13.36□□□□□ -0.27
COL6A3-202ENST00000347401 CSGALNACT1Q8TDX6 532 aa13.36□□□□□ -0.27
COL6A3-202ENST00000347401 APBA2Q99767 749 aa13.36□□□□□ -0.27
COL6A3-202ENST00000347401 ARL15Q9NXU5 204 aa13.36□□□□□ -0.27
COL6A3-202ENST00000347401 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP13.36□□□□□ -0.27
COL6A3-202ENST00000347401 AP3D1O14617 1153 aa13.36□□□□□ -0.27
COL6A3-202ENST00000347401 DBTP11182 482 aaKnown RBP13.36□□□□□ -0.27
COL6A3-202ENST00000347401 FGFR3P22607 806 aa13.36□□□□□ -0.27
COL6A3-202ENST00000347401 F8A1P23610 371 aa13.36□□□□□ -0.27
COL6A3-202ENST00000347401 PFKFB4Q16877 469 aa13.36□□□□□ -0.27
COL6A3-202ENST00000347401 TMC8Q8IU68 726 aa13.36□□□□□ -0.27
COL6A3-202ENST00000347401 SELENOMQ8WWX9 145 aa13.36□□□□□ -0.27
COL6A3-202ENST00000347401 YME1L1Q96TA2 773 aa13.36□□□□□ -0.27
COL6A3-202ENST00000347401 SEMA3GQ9NS98 782 aa13.36□□□□□ -0.27
COL6A3-202ENST00000347401 VPS28Q9UK41 221 aa13.36□□□□□ -0.27
COL6A3-202ENST00000347401 RAB23Q9ULC3 237 aa13.36□□□□□ -0.27
COL6A3-202ENST00000347401 PLLPQ9Y342 182 aa13.36□□□□□ -0.27
COL6A3-202ENST00000347401 PCDHGB6Q9Y5F9 930 aa13.36□□□□□ -0.27
COL6A3-202ENST00000347401 RHOAP61586 193 aa13.35□□□□□ -0.27
COL6A3-202ENST00000347401 MGAT5BQ3V5L5 792 aa13.35□□□□□ -0.27
COL6A3-202ENST00000347401 FAM153CQ494X1 144 aa13.35□□□□□ -0.27
COL6A3-202ENST00000347401 UNC5BQ8IZJ1 945 aa13.35□□□□□ -0.27
COL6A3-202ENST00000347401 UBA3Q8TBC4 463 aa13.35□□□□□ -0.27
COL6A3-202ENST00000347401 SLC4A5Q9BY07 1137 aa13.35□□□□□ -0.27
COL6A3-202ENST00000347401 ETNK2Q9NVF9 386 aa13.35□□□□□ -0.27
COL6A3-202ENST00000347401 ZNF224Q9NZL3 707 aa13.35□□□□□ -0.27
COL6A3-202ENST00000347401 MTA2O94776 668 aa13.35□□□□□ -0.27
COL6A3-202ENST00000347401 ZNF806P0C7X5 589 aa13.35□□□□□ -0.27
COL6A3-202ENST00000347401 PIK3R6Q5UE93 754 aa13.35□□□□□ -0.27
COL6A3-202ENST00000347401 PGBD2Q6P3X8 592 aa13.35□□□□□ -0.27
COL6A3-202ENST00000347401 ANKRA2Q9H9E1 313 aa13.35□□□□□ -0.27
COL6A3-202ENST00000347401 INTS7Q9NVH2 962 aaKnown RBP13.35□□□□□ -0.27
COL6A3-202ENST00000347401 GRIP1Q9Y3R0 1128 aa13.35□□□□□ -0.27
COL6A3-202ENST00000347401 NDUFB5O43674 189 aa13.35□□□□□ -0.27
COL6A3-202ENST00000347401 EDF1O60869 148 aaKnown RBP13.35□□□□□ -0.27
COL6A3-202ENST00000347401 PNLIPRP1P54315 467 aa13.35□□□□□ -0.27
COL6A3-202ENST00000347401 MTMR2Q13614 643 aa13.35□□□□□ -0.27
COL6A3-202ENST00000347401 GRM3Q14832 879 aa13.35□□□□□ -0.27
COL6A3-202ENST00000347401 DUPD1Q68J44 220 aa13.35□□□□□ -0.27
COL6A3-202ENST00000347401 BAP1Q92560 729 aa13.35□□□□□ -0.27
COL6A3-202ENST00000347401 TAMM41Q96BW9 452 aa13.35□□□□□ -0.27
COL6A3-202ENST00000347401 ZNF347Q96SE7 839 aa13.35□□□□□ -0.27
COL6A3-202ENST00000347401 FADS2P1A8MWK0 482 aa13.35□□□□□ -0.27
COL6A3-202ENST00000347401 NTRK1P04629 796 aa13.35□□□□□ -0.27
COL6A3-202ENST00000347401 CDH5P33151 784 aaPredicted RBP13.35□□□□□ -0.27
COL6A3-202ENST00000347401 KLHL22Q53GT1 634 aa13.35□□□□□ -0.27
COL6A3-202ENST00000347401 TDRPQ86YL5 185 aa13.35□□□□□ -0.27
COL6A3-202ENST00000347401 SLC9A9Q8IVB4 645 aa13.35□□□□□ -0.27
COL6A3-202ENST00000347401 C11orf24Q96F05 449 aaPredicted RBP13.35□□□□□ -0.27
COL6A3-202ENST00000347401 FNDC11Q9BVV2 318 aa13.35□□□□□ -0.27
COL6A3-202ENST00000347401 EVA1BQ9NVM1 165 aa13.35□□□□□ -0.27
COL6A3-202ENST00000347401 CD163L1Q9NR16 1453 aa13.35□□□□□ -0.27
COL6A3-202ENST00000347401 FAAP100Q0VG06 881 aa13.35□□□□□ -0.27
COL6A3-202ENST00000347401 OR8H1Q8NGG4 311 aa13.35□□□□□ -0.27
COL6A3-202ENST00000347401 NODALQ96S42 347 aa13.35□□□□□ -0.27
COL6A3-202ENST00000347401 XKR8Q9H6D3 395 aa13.35□□□□□ -0.27
COL6A3-202ENST00000347401 LYVE1Q9Y5Y7 322 aa13.35□□□□□ -0.27
COL6A3-202ENST00000347401 GCATO75600 419 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms