RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 EME2A4GXA9 379 aaPredicted RBP19.62■□□□□ 0.73
LIME1-201ENST00000309546 TMEM110-MUSTN1A8MSY1 372 aa19.62■□□□□ 0.73
LIME1-201ENST00000309546 LMO7DNF2Z398 122 aa19.62■□□□□ 0.73
LIME1-201ENST00000309546 YY2O15391 372 aa19.62■□□□□ 0.73
LIME1-201ENST00000309546 CSO75390 466 aaKnown RBP19.62■□□□□ 0.73
LIME1-201ENST00000309546 RECQL5O94762 991 aaPredicted RBP19.62■□□□□ 0.73
LIME1-201ENST00000309546 RASGRP1O95267 797 aa19.62■□□□□ 0.73
LIME1-201ENST00000309546 CYP1A2P05177 515 aa19.62■□□□□ 0.73
LIME1-201ENST00000309546 CTSEP14091 401 aa19.62■□□□□ 0.73
LIME1-201ENST00000309546 TGM2P21980 687 aa19.62■□□□□ 0.73
LIME1-201ENST00000309546 CASP14P31944 242 aa19.62■□□□□ 0.73
LIME1-201ENST00000309546 SERPINB6P35237 376 aa19.62■□□□□ 0.73
LIME1-201ENST00000309546 ABCG1P45844 678 aa19.62■□□□□ 0.73
LIME1-201ENST00000309546 RPIAP49247 311 aa19.62■□□□□ 0.73
LIME1-201ENST00000309546 HK3P52790 923 aa19.62■□□□□ 0.73
LIME1-201ENST00000309546 POLR2LP62875 67 aaKnown RBP19.62■□□□□ 0.73
LIME1-201ENST00000309546 MTM1Q13496 603 aa19.62■□□□□ 0.73
LIME1-201ENST00000309546 ALG11Q2TAA5 492 aa19.62■□□□□ 0.73
LIME1-201ENST00000309546 ZSCAN23Q3MJ62 389 aa19.62■□□□□ 0.73
LIME1-201ENST00000309546 NYAP1Q6ZVC0 841 aa19.62■□□□□ 0.73
LIME1-201ENST00000309546 DPPA4Q7L190 304 aa19.62■□□□□ 0.73
LIME1-201ENST00000309546 SLC35F3Q8IY50 421 aa19.62■□□□□ 0.73
LIME1-201ENST00000309546 BBS5Q8N3I7 341 aa19.62■□□□□ 0.73
LIME1-201ENST00000309546 FSTL5Q8N475 847 aaPredicted RBP19.62■□□□□ 0.73
LIME1-201ENST00000309546 PLA2G15Q8NCC3 412 aa19.62■□□□□ 0.73
LIME1-201ENST00000309546 ZNF564Q8TBZ8 553 aaPredicted RBP19.62■□□□□ 0.73
LIME1-201ENST00000309546 NSMCE1Q8WV22 266 aa19.62■□□□□ 0.73
LIME1-201ENST00000309546 TBATAQ96M53 351 aa19.62■□□□□ 0.73
LIME1-201ENST00000309546 BOCQ9BWV1 1114 aa19.62■□□□□ 0.73
LIME1-201ENST00000309546 SYNDIG1Q9H7V2 258 aa19.62■□□□□ 0.73
LIME1-201ENST00000309546 SIRPGQ9P1W8 387 aa19.62■□□□□ 0.73
LIME1-201ENST00000309546 KLQ9UEF7 1012 aa19.62■□□□□ 0.73
LIME1-201ENST00000309546 PCDHGC4Q9Y5F7 938 aa19.62■□□□□ 0.73
LIME1-201ENST00000309546 RP1P56715 2156 aa19.61■□□□□ 0.73
LIME1-201ENST00000309546 CACNA1GO43497 2377 aa19.61■□□□□ 0.73
LIME1-201ENST00000309546 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP19.61■□□□□ 0.73
LIME1-201ENST00000309546 MYO1FO00160 1098 aa19.61■□□□□ 0.73
LIME1-201ENST00000309546 TRAFD1O14545 582 aaPredicted RBP19.61■□□□□ 0.73
LIME1-201ENST00000309546 MAFKO60675 156 aa19.61■□□□□ 0.73
LIME1-201ENST00000309546 CPP00450 1065 aa19.61■□□□□ 0.73
LIME1-201ENST00000309546 MPOP05164 745 aa19.61■□□□□ 0.73
LIME1-201ENST00000309546 HOXB3P14651 431 aaPredicted RBP19.61■□□□□ 0.73
LIME1-201ENST00000309546 HSPA9P38646 679 aaKnown RBP19.61■□□□□ 0.73
LIME1-201ENST00000309546 MAXP61244 160 aa19.61■□□□□ 0.73
LIME1-201ENST00000309546 ACOX1Q15067 660 aa19.61■□□□□ 0.73
LIME1-201ENST00000309546 AGERQ15109 404 aa19.61■□□□□ 0.73
LIME1-201ENST00000309546 PERM1Q5SV97 790 aa19.61■□□□□ 0.73
LIME1-201ENST00000309546 LIPIQ6XZB0 460 aa19.61■□□□□ 0.73
LIME1-201ENST00000309546 LRRC69Q6ZNQ3 347 aa19.61■□□□□ 0.73
LIME1-201ENST00000309546 PGBD5Q8N414 524 aa19.61■□□□□ 0.73
LIME1-201ENST00000309546 ATL2Q8NHH9 583 aa19.61■□□□□ 0.73
LIME1-201ENST00000309546 PCDH19Q8TAB3 1148 aa19.61■□□□□ 0.73
LIME1-201ENST00000309546 PDXPQ96GD0 296 aa19.61■□□□□ 0.73
LIME1-201ENST00000309546 CRELD1Q96HD1 420 aa19.61■□□□□ 0.73
LIME1-201ENST00000309546 WDR92Q96MX6 357 aa19.61■□□□□ 0.73
LIME1-201ENST00000309546 XPO4Q9C0E2 1151 aaKnown RBP19.61■□□□□ 0.73
LIME1-201ENST00000309546 B4GALT6Q9UBX8 382 aa19.61■□□□□ 0.73
LIME1-201ENST00000309546 COL27A1Q8IZC6 1860 aaPredicted RBP19.6■□□□□ 0.73
LIME1-201ENST00000309546 CFAP69A5D8W1 941 aa19.6■□□□□ 0.73
LIME1-201ENST00000309546 CACNB4O00305 520 aaPredicted RBP19.6■□□□□ 0.73
LIME1-201ENST00000309546 USP12O75317 370 aa19.6■□□□□ 0.73
LIME1-201ENST00000309546 PEX11BO96011 259 aa19.6■□□□□ 0.73
LIME1-201ENST00000309546 TPM3P06753 285 aa19.6■□□□□ 0.73
LIME1-201ENST00000309546 ALPIP09923 528 aa19.6■□□□□ 0.73
LIME1-201ENST00000309546 PTMSP20962 102 aa19.6■□□□□ 0.73
LIME1-201ENST00000309546 ITPKBP27987 946 aa19.6■□□□□ 0.73
LIME1-201ENST00000309546 ACTN2P35609 894 aa19.6■□□□□ 0.73
LIME1-201ENST00000309546 EIF2S3P41091 472 aaKnown RBP19.6■□□□□ 0.73
LIME1-201ENST00000309546 SRP54P61011 504 aaKnown RBP19.6■□□□□ 0.73
LIME1-201ENST00000309546 GABREP78334 506 aa19.6■□□□□ 0.73
LIME1-201ENST00000309546 MMRN1Q13201 1228 aa19.6■□□□□ 0.73
LIME1-201ENST00000309546 ELOCQ15369 112 aa19.6■□□□□ 0.73
LIME1-201ENST00000309546 HADHQ16836 314 aaKnown RBP19.6■□□□□ 0.73
LIME1-201ENST00000309546 DENND2CQ68D51 928 aa19.6■□□□□ 0.73
LIME1-201ENST00000309546 ESRP1Q6NXG1 681 aaKnown RBP19.6■□□□□ 0.73
LIME1-201ENST00000309546 NUDCD1Q96RS6 583 aa19.6■□□□□ 0.73
LIME1-201ENST00000309546 CTTNBP2NLQ9P2B4 639 aa19.6■□□□□ 0.73
LIME1-201ENST00000309546 GULP1Q9UBP9 304 aa19.6■□□□□ 0.73
LIME1-201ENST00000309546 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP19.6■□□□□ 0.737e-11■■■■■ 38.8
LIME1-201ENST00000309546 RRP8O43159 456 aaKnown RBP19.59■□□□□ 0.73
LIME1-201ENST00000309546 MFSD11O43934 449 aa19.59■□□□□ 0.73
LIME1-201ENST00000309546 SOCS5O75159 536 aa19.59■□□□□ 0.73
LIME1-201ENST00000309546 CD48P09326 243 aa19.59■□□□□ 0.73
LIME1-201ENST00000309546 CR2P20023 1033 aa19.59■□□□□ 0.73
LIME1-201ENST00000309546 MMP13P45452 471 aa19.59■□□□□ 0.73
LIME1-201ENST00000309546 TRAF2Q12933 501 aa19.59■□□□□ 0.73
LIME1-201ENST00000309546 TBC1D25Q3MII6 688 aa19.59■□□□□ 0.73
LIME1-201ENST00000309546 MARC1Q5VT66 337 aa19.59■□□□□ 0.73
LIME1-201ENST00000309546 CPNE8Q86YQ8 564 aa19.59■□□□□ 0.73
LIME1-201ENST00000309546 SNIP1Q8TAD8 396 aaKnown RBP19.59■□□□□ 0.73
LIME1-201ENST00000309546 SCG3Q8WXD2 468 aaKnown RBP19.59■□□□□ 0.73
LIME1-201ENST00000309546 FGF11Q92914 225 aa19.59■□□□□ 0.73
LIME1-201ENST00000309546 NAT6Q93015 286 aa19.59■□□□□ 0.73
LIME1-201ENST00000309546 MGME1Q9BQP7 344 aa19.59■□□□□ 0.73
LIME1-201ENST00000309546 NOD2Q9HC29 1040 aa19.59■□□□□ 0.73
LIME1-201ENST00000309546 PADI4Q9UM07 663 aa19.59■□□□□ 0.73
LIME1-201ENST00000309546 TNFP01375 233 aa19.58■□□□□ 0.72
LIME1-201ENST00000309546 GM2AP17900 193 aa19.58■□□□□ 0.72
LIME1-201ENST00000309546 KIAA1024LP59773 190 aa19.58■□□□□ 0.72
LIME1-201ENST00000309546 ISXQ2M1V0 245 aa19.58■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms