RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 SLC12A4Q9UP95 1085 aa10.8□□□□□ -0.68
CD44-201ENST00000263398 RGPD2P0DJD1 1756 aa10.8□□□□□ -0.68
CD44-201ENST00000263398 SMIM28A0A1B0GU29 152 aa10.8□□□□□ -0.68
CD44-201ENST00000263398 CARNS1A5YM72 827 aa10.8□□□□□ -0.68
CD44-201ENST00000263398 C5orf60A6NFR6 353 aa10.8□□□□□ -0.68
CD44-201ENST00000263398 TK2O00142 265 aa10.8□□□□□ -0.68
CD44-201ENST00000263398 QSOX1O00391 747 aa10.8□□□□□ -0.68
CD44-201ENST00000263398 FAM155BO75949 473 aa10.8□□□□□ -0.68
CD44-201ENST00000263398 MFN2O95140 757 aa10.8□□□□□ -0.68
CD44-201ENST00000263398 TSPAN19P0C672 248 aa10.8□□□□□ -0.68
CD44-201ENST00000263398 HDCP19113 662 aa10.8□□□□□ -0.68
CD44-201ENST00000263398 MPSTP25325 297 aa10.8□□□□□ -0.68
CD44-201ENST00000263398 CRATP43155 626 aa10.8□□□□□ -0.68
CD44-201ENST00000263398 DGKZQ13574 1117 aa10.8□□□□□ -0.68
CD44-201ENST00000263398 SLC5A9Q2M3M2 681 aa10.8□□□□□ -0.68
CD44-201ENST00000263398 ALFQ53S48 1182 aa10.8□□□□□ -0.68
CD44-201ENST00000263398 RBM44Q6ZP01 1051 aaKnown RBP10.8□□□□□ -0.68
CD44-201ENST00000263398 PPTC7Q8NI37 304 aa10.8□□□□□ -0.68
CD44-201ENST00000263398 MAGEB10Q96LZ2 347 aaPredicted RBP10.8□□□□□ -0.68
CD44-201ENST00000263398 QKIQ96PU8 341 aaKnown RBP eCLIP10.8□□□□□ -0.68
CD44-201ENST00000263398 NTPCRQ9BSD7 190 aaKnown RBP10.8□□□□□ -0.68
CD44-201ENST00000263398 HDHD2Q9H0R4 259 aa10.8□□□□□ -0.68
CD44-201ENST00000263398 SIX2Q9NPC8 291 aa10.8□□□□□ -0.68
CD44-201ENST00000263398 RSL24D1Q9UHA3 163 aaKnown RBP10.8□□□□□ -0.68
CD44-201ENST00000263398 GTF2A1LQ9UNN4 478 aa10.8□□□□□ -0.68
CD44-201ENST00000263398 RPTORQ8N122 1335 aa10.79□□□□□ -0.68
CD44-201ENST00000263398 IGKV6D-41A0A0C4DH26 115 aa10.79□□□□□ -0.68
CD44-201ENST00000263398 LOC100506127A0A0U1RQW1 187 aa10.79□□□□□ -0.68
CD44-201ENST00000263398 PAGE1O75459 146 aa10.79□□□□□ -0.68
CD44-201ENST00000263398 WBP4O75554 376 aaKnown RBP10.79□□□□□ -0.68
CD44-201ENST00000263398 STX11O75558 287 aa10.79□□□□□ -0.68
CD44-201ENST00000263398 CYP7B1O75881 506 aa10.79□□□□□ -0.68
CD44-201ENST00000263398 CHRNB2P17787 502 aa10.79□□□□□ -0.68
CD44-201ENST00000263398 POLR2EP19388 210 aaKnown RBP10.79□□□□□ -0.68
CD44-201ENST00000263398 RPL3P39023 403 aaKnown RBP10.79□□□□□ -0.68
CD44-201ENST00000263398 RGS21Q2M5E4 152 aa10.79□□□□□ -0.68
CD44-201ENST00000263398 TIGD2Q4W5G0 525 aa10.79□□□□□ -0.68
CD44-201ENST00000263398 INTS6LQ5JSJ4 861 aaKnown RBP10.79□□□□□ -0.68
CD44-201ENST00000263398 PRAMEF19Q5SWL8 479 aa10.79□□□□□ -0.68
CD44-201ENST00000263398 ANKRD22Q5VYY1 191 aa10.79□□□□□ -0.68
CD44-201ENST00000263398 LBX2Q6XYB7 198 aa10.79□□□□□ -0.68
CD44-201ENST00000263398 TPGS1Q6ZTW0 290 aa10.79□□□□□ -0.68
CD44-201ENST00000263398 TBC1D21Q8IYX1 336 aa10.79□□□□□ -0.68
CD44-201ENST00000263398 OFCC1Q8IZS5 231 aa10.79□□□□□ -0.68
CD44-201ENST00000263398 ZNF483Q8TF39 744 aaPredicted RBP10.79□□□□□ -0.68
CD44-201ENST00000263398 PTCD2Q8WV60 388 aaKnown RBP10.79□□□□□ -0.68
CD44-201ENST00000263398 WDR60Q8WVS4 1066 aa10.79□□□□□ -0.68
CD44-201ENST00000263398 LPPQ93052 612 aa10.79□□□□□ -0.68
CD44-201ENST00000263398 DENND2DQ9H6A0 471 aaPredicted RBP10.79□□□□□ -0.68
CD44-201ENST00000263398 PLGRKTQ9HBL7 147 aa10.79□□□□□ -0.68
CD44-201ENST00000263398 EGFL7Q9UHF1 273 aa10.79□□□□□ -0.68
CD44-201ENST00000263398 AGO1Q9UL18 857 aaKnown RBP10.79□□□□□ -0.68
CD44-201ENST00000263398 PSME2Q9UL46 239 aa10.79□□□□□ -0.68
CD44-201ENST00000263398 SMIM35A0A1B0GVV1 85 aa10.79□□□□□ -0.68
CD44-201ENST00000263398 MFSD11O43934 449 aa10.79□□□□□ -0.68
CD44-201ENST00000263398 TLR5O60602 858 aa10.79□□□□□ -0.68
CD44-201ENST00000263398 SLC22A3O75751 556 aa10.79□□□□□ -0.68
CD44-201ENST00000263398 IPO13O94829 963 aaKnown RBP10.79□□□□□ -0.68
CD44-201ENST00000263398 CST1P01037 141 aa10.79□□□□□ -0.68
CD44-201ENST00000263398 LINC00032P0C843 101 aa10.79□□□□□ -0.68
CD44-201ENST00000263398 HOXB6P17509 224 aaKnown RBP10.79□□□□□ -0.68
CD44-201ENST00000263398 FEN1P39748 380 aaKnown RBP10.79□□□□□ -0.68
CD44-201ENST00000263398 MAP2K5Q13163 448 aa10.79□□□□□ -0.68
CD44-201ENST00000263398 LYPLAL1Q5VWZ2 237 aa10.79□□□□□ -0.68
CD44-201ENST00000263398 FBXL19Q6PCT2 694 aa10.79□□□□□ -0.68
CD44-201ENST00000263398 ANKS1BQ7Z6G8 1248 aa10.79□□□□□ -0.68
CD44-201ENST00000263398 NLNQ9BYT8 704 aa10.79□□□□□ -0.68
CD44-201ENST00000263398 NOL6Q9H6R4 1146 aaKnown RBP10.79□□□□□ -0.68
CD44-201ENST00000263398 ENTPD4Q9Y227 616 aa10.79□□□□□ -0.68
CD44-201ENST00000263398 GSTK1Q9Y2Q3 226 aa10.79□□□□□ -0.68
CD44-201ENST00000263398 ADCY6O43306 1168 aa10.79□□□□□ -0.68
CD44-201ENST00000263398 SIN3BO75182 1162 aa10.79□□□□□ -0.68
CD44-201ENST00000263398 AP2A1O95782 977 aa10.79□□□□□ -0.68
CD44-201ENST00000263398 VAV1P15498 845 aa10.79□□□□□ -0.68
CD44-201ENST00000263398 CCNA2P20248 432 aa10.79□□□□□ -0.68
CD44-201ENST00000263398 CXCR2P25025 360 aa10.79□□□□□ -0.68
CD44-201ENST00000263398 GUCA1AP43080 201 aaPredicted RBP10.79□□□□□ -0.68
CD44-201ENST00000263398 LIMK2P53671 638 aa10.79□□□□□ -0.68
CD44-201ENST00000263398 TUSC3Q13454 348 aa10.79□□□□□ -0.68
CD44-201ENST00000263398 CPSF6Q16630 551 aaKnown RBP eCLIP10.79□□□□□ -0.68
CD44-201ENST00000263398 DUSP28Q4G0W2 176 aa10.79□□□□□ -0.68
CD44-201ENST00000263398 GPR142Q7Z601 462 aa10.79□□□□□ -0.68
CD44-201ENST00000263398 HPS6Q86YV9 775 aa10.79□□□□□ -0.68
CD44-201ENST00000263398 DENND1CQ8IV53 801 aa10.79□□□□□ -0.68
CD44-201ENST00000263398 EXOC2Q96KP1 924 aa10.79□□□□□ -0.68
CD44-201ENST00000263398 NPAS2Q99743 824 aa10.79□□□□□ -0.68
CD44-201ENST00000263398 ZDHHC6Q9H6R6 413 aa10.79□□□□□ -0.68
CD44-201ENST00000263398 HMX1Q9NP08 348 aaPredicted RBP10.79□□□□□ -0.68
CD44-201ENST00000263398 BPIFA1Q9NP55 256 aa10.79□□□□□ -0.68
CD44-201ENST00000263398 BTBD3Q9Y2F9 522 aa10.79□□□□□ -0.68
CD44-201ENST00000263398 GOLGA4Q13439 2230 aaKnown RBP10.79□□□□□ -0.68
CD44-201ENST00000263398 PMM2O15305 246 aa10.79□□□□□ -0.68
CD44-201ENST00000263398 PLIN3O60664 434 aa10.79□□□□□ -0.68
CD44-201ENST00000263398 XYLBO75191 536 aa10.79□□□□□ -0.68
CD44-201ENST00000263398 NEK10Q6ZWH5 1172 aa10.79□□□□□ -0.68
CD44-201ENST00000263398 VN1R5Q7Z5H4 357 aa10.79□□□□□ -0.68
CD44-201ENST00000263398 PIGWQ7Z7B1 504 aa10.79□□□□□ -0.68
CD44-201ENST00000263398 DEPDC4Q8N2C3 294 aa10.79□□□□□ -0.68
CD44-201ENST00000263398 PPP1R13LQ8WUF5 828 aa10.79□□□□□ -0.68
CD44-201ENST00000263398 LINGO1Q96FE5 620 aa10.79□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms