RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 TRHDEQ9UKU6 1024 aa10.11□□□□□ -0.79
LIG3-201ENST00000262327 CROCCQ5TZA2 2017 aa10.11□□□□□ -0.79
LIG3-201ENST00000262327 ARHGEF37A1IGU5 675 aa10.11□□□□□ -0.79
LIG3-201ENST00000262327 TRIM38O00635 465 aa10.11□□□□□ -0.79
LIG3-201ENST00000262327 UBDO15205 165 aa10.11□□□□□ -0.79
LIG3-201ENST00000262327 FOXD2O60548 495 aaPredicted RBP10.11□□□□□ -0.79
LIG3-201ENST00000262327 HLA-DQB2P05538 268 aa10.11□□□□□ -0.79
LIG3-201ENST00000262327 APOA4P06727 396 aa10.11□□□□□ -0.79
LIG3-201ENST00000262327 ELNP15502 786 aa10.11□□□□□ -0.79
LIG3-201ENST00000262327 WARSP23381 471 aaKnown RBP10.11□□□□□ -0.79
LIG3-201ENST00000262327 CA8P35219 290 aa10.11□□□□□ -0.79
LIG3-201ENST00000262327 ARCN1P48444 511 aaKnown RBP10.11□□□□□ -0.79
LIG3-201ENST00000262327 KCNC1P48547 511 aa10.11□□□□□ -0.79
LIG3-201ENST00000262327 COG7P83436 770 aa10.11□□□□□ -0.79
LIG3-201ENST00000262327 PTPRCAPQ14761 206 aa10.11□□□□□ -0.79
LIG3-201ENST00000262327 ZFP1Q6P2D0 407 aa10.11□□□□□ -0.79
LIG3-201ENST00000262327 TTC16Q8NEE8 873 aa10.11□□□□□ -0.79
LIG3-201ENST00000262327 SLCO4A1Q96BD0 722 aa10.11□□□□□ -0.79
LIG3-201ENST00000262327 DHRS1Q96LJ7 313 aa10.11□□□□□ -0.79
LIG3-201ENST00000262327 TMEM209Q96SK2 561 aa10.11□□□□□ -0.79
LIG3-201ENST00000262327 SLC39A8Q9C0K1 460 aa10.11□□□□□ -0.79
LIG3-201ENST00000262327 FAM124BQ9H5Z6 455 aaPredicted RBP10.11□□□□□ -0.79
LIG3-201ENST00000262327 RBM22Q9NW64 420 aaKnown RBP eCLIP10.11□□□□□ -0.792e-8■■■■■ 35.1
LIG3-201ENST00000262327 CACNA2D2Q9NY47 1150 aa10.11□□□□□ -0.79
LIG3-201ENST00000262327 DSEQ9UL01 958 aa10.11□□□□□ -0.79
LIG3-201ENST00000262327 AURKCQ9UQB9 309 aa10.11□□□□□ -0.79
LIG3-201ENST00000262327 ANKRD6Q9Y2G4 727 aa10.11□□□□□ -0.79
LIG3-201ENST00000262327 MYADML2A6NDP7 307 aa10.1□□□□□ -0.79
LIG3-201ENST00000262327 PSMD12O00232 456 aaPredicted RBP10.1□□□□□ -0.79
LIG3-201ENST00000262327 SUPT7LO94864 414 aa10.1□□□□□ -0.79
LIG3-201ENST00000262327 CLIC3O95833 236 aa10.1□□□□□ -0.79
LIG3-201ENST00000262327 RPLP2P05387 115 aaKnown RBP10.1□□□□□ -0.79
LIG3-201ENST00000262327 CPB1P15086 417 aa10.1□□□□□ -0.79
LIG3-201ENST00000262327 CHRM3P20309 590 aa10.1□□□□□ -0.79
LIG3-201ENST00000262327 CCND3P30281 292 aaPredicted RBP10.1□□□□□ -0.79
LIG3-201ENST00000262327 PNPLA4P41247 253 aa10.1□□□□□ -0.79
LIG3-201ENST00000262327 SLC7A2P52569 658 aa10.1□□□□□ -0.79
LIG3-201ENST00000262327 TRIM25Q14258 630 aaKnown RBP10.1□□□□□ -0.79
LIG3-201ENST00000262327 BTBD8Q5XKL5 378 aa10.1□□□□□ -0.79
LIG3-201ENST00000262327 CUZD1Q86UP6 607 aa10.1□□□□□ -0.79
LIG3-201ENST00000262327 PCSK9Q8NBP7 692 aaKnown RBP10.1□□□□□ -0.79
LIG3-201ENST00000262327 PPHLN1Q8NEY8 458 aaKnown RBP10.1□□□□□ -0.79
LIG3-201ENST00000262327 MRPS26Q9BYN8 205 aaKnown RBP10.1□□□□□ -0.79
LIG3-201ENST00000262327 ALG9Q9H6U8 611 aa10.1□□□□□ -0.79
LIG3-201ENST00000262327 ARHGEF38Q9NXL2 777 aa10.1□□□□□ -0.79
LIG3-201ENST00000262327 VTI1BQ9UEU0 232 aa10.1□□□□□ -0.79
LIG3-201ENST00000262327 CRYL1Q9Y2S2 319 aa10.1□□□□□ -0.79
LIG3-201ENST00000262327 ERI2A8K979 691 aaKnown RBP10.1□□□□□ -0.79
LIG3-201ENST00000262327 A8MT66 165 aa10.1□□□□□ -0.79
LIG3-201ENST00000262327 IQCJ-SCHIP1C9J366 451 aaPredicted RBP10.1□□□□□ -0.79
LIG3-201ENST00000262327 NCAM2O15394 837 aa10.1□□□□□ -0.79
LIG3-201ENST00000262327 MAGEB3O15480 346 aa10.1□□□□□ -0.79
LIG3-201ENST00000262327 AP1G1O43747 822 aa10.1□□□□□ -0.79
LIG3-201ENST00000262327 CTSHP09668 335 aa10.1□□□□□ -0.79
LIG3-201ENST00000262327 GRIA3P42263 894 aa10.1□□□□□ -0.79
LIG3-201ENST00000262327 GALK1P51570 392 aa10.1□□□□□ -0.79
LIG3-201ENST00000262327 GEN1Q17RS7 908 aa10.1□□□□□ -0.79
LIG3-201ENST00000262327 TFAP2DQ7Z6R9 452 aa10.1□□□□□ -0.79
LIG3-201ENST00000262327 SETD3Q86TU7 594 aaPredicted RBP10.1□□□□□ -0.79
LIG3-201ENST00000262327 ZBTB46Q86UZ6 589 aa10.1□□□□□ -0.79
LIG3-201ENST00000262327 ZNF354CQ86Y25 554 aa10.1□□□□□ -0.79
LIG3-201ENST00000262327 SLC15A3Q8IY34 581 aa10.1□□□□□ -0.79
LIG3-201ENST00000262327 AHI1Q8N157 1196 aa10.1□□□□□ -0.79
LIG3-201ENST00000262327 OR6P1Q8NGX9 317 aa10.1□□□□□ -0.79
LIG3-201ENST00000262327 ZNF296Q8WUU4 475 aaPredicted RBP10.1□□□□□ -0.79
LIG3-201ENST00000262327 KCTD13Q8WZ19 329 aa10.1□□□□□ -0.79
LIG3-201ENST00000262327 NTAN1Q96AB6 310 aa10.1□□□□□ -0.79
LIG3-201ENST00000262327 C3orf30Q96M34 536 aa10.1□□□□□ -0.79
LIG3-201ENST00000262327 KLHL5Q96PQ7 755 aa10.1□□□□□ -0.79
LIG3-201ENST00000262327 RBM38Q9H0Z9 239 aaKnown RBP10.1□□□□□ -0.79
LIG3-201ENST00000262327 IGSF5Q9NSI5 407 aa10.1□□□□□ -0.79
LIG3-201ENST00000262327 KCTD3Q9Y597 815 aa10.1□□□□□ -0.79
LIG3-201ENST00000262327 UBFD1O14562 309 aaKnown RBP10.1□□□□□ -0.79
LIG3-201ENST00000262327 MRASO14807 208 aa10.1□□□□□ -0.79
LIG3-201ENST00000262327 AKAP10O43572 662 aa10.1□□□□□ -0.79
LIG3-201ENST00000262327 XPOTO43592 962 aaKnown RBP10.1□□□□□ -0.79
LIG3-201ENST00000262327 TADA2AO75478 443 aa10.1□□□□□ -0.79
LIG3-201ENST00000262327 GJB3O75712 270 aa10.1□□□□□ -0.79
LIG3-201ENST00000262327 GNAO1P09471 354 aa10.1□□□□□ -0.79
LIG3-201ENST00000262327 IKBKEQ14164 716 aa10.1□□□□□ -0.79
LIG3-201ENST00000262327 CAPRIN1Q14444 709 aaKnown RBP10.1□□□□□ -0.79
LIG3-201ENST00000262327 FAM83EQ2M2I3 478 aa10.1□□□□□ -0.79
LIG3-201ENST00000262327 CCSAPQ6IQ19 270 aaPredicted RBP10.1□□□□□ -0.79
LIG3-201ENST00000262327 KRT80Q6KB66 452 aa10.1□□□□□ -0.79
LIG3-201ENST00000262327 HMBOX1Q6NT76 420 aa10.1□□□□□ -0.79
LIG3-201ENST00000262327 NEPROQ6NW34 567 aa10.1□□□□□ -0.79
LIG3-201ENST00000262327 DUS1LQ6P1R4 473 aaKnown RBP10.1□□□□□ -0.79
LIG3-201ENST00000262327 TAF2Q6P1X5 1199 aa10.1□□□□□ -0.79
LIG3-201ENST00000262327 BHLHA9Q7RTU4 235 aa10.1□□□□□ -0.79
LIG3-201ENST00000262327 CPNE9Q8IYJ1 553 aa10.1□□□□□ -0.79
LIG3-201ENST00000262327 TOP6BLQ8N6T0 577 aa10.1□□□□□ -0.79
LIG3-201ENST00000262327 TSPAN14Q8NG11 270 aa10.1□□□□□ -0.79
LIG3-201ENST00000262327 OR52K2Q8NGK3 314 aa10.1□□□□□ -0.79
LIG3-201ENST00000262327 RDH11Q8TC12 318 aa10.1□□□□□ -0.79
LIG3-201ENST00000262327 DQX1Q8TE96 717 aaKnown RBP10.1□□□□□ -0.79
LIG3-201ENST00000262327 CANT1Q8WVQ1 401 aa10.1□□□□□ -0.79
LIG3-201ENST00000262327 GLOD4Q9HC38 313 aa10.1□□□□□ -0.79
LIG3-201ENST00000262327 PTTG2Q9NZH5 202 aa10.1□□□□□ -0.79
LIG3-201ENST00000262327 HEATR9A2RTY3 570 aa10.09□□□□□ -0.79
LIG3-201ENST00000262327 SIX3O95343 332 aaPredicted RBP10.09□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms