RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 CAND1Q86VP6 1230 aaKnown RBP11.64□□□□□ -0.55
VPS4A-201ENST00000254950 OR2AP1Q8NGE2 309 aa11.64□□□□□ -0.55
VPS4A-201ENST00000254950 HERVK_113Q902F9 699 aa11.64□□□□□ -0.55
VPS4A-201ENST00000254950 PHF21BQ96EK2 531 aa11.64□□□□□ -0.55
VPS4A-201ENST00000254950 COPS8Q99627 209 aa11.64□□□□□ -0.55
VPS4A-201ENST00000254950 RBBP8Q99708 897 aa11.64□□□□□ -0.55
VPS4A-201ENST00000254950 LMAN2LQ9H0V9 348 aa11.64□□□□□ -0.55
VPS4A-201ENST00000254950 CDYLQ9Y232 598 aa11.64□□□□□ -0.55
VPS4A-201ENST00000254950 SCN1AP35498 2009 aa11.64□□□□□ -0.55
VPS4A-201ENST00000254950 NCF1BA6NI72 391 aaPredicted RBP11.63□□□□□ -0.55
VPS4A-201ENST00000254950 TRPC5OSA6NMA1 111 aa11.63□□□□□ -0.55
VPS4A-201ENST00000254950 NCF1CA8MVU1 366 aaPredicted RBP11.63□□□□□ -0.55
VPS4A-201ENST00000254950 SLCO1B7G3V0H7 640 aa11.63□□□□□ -0.55
VPS4A-201ENST00000254950 EPOP01588 193 aa11.63□□□□□ -0.55
VPS4A-201ENST00000254950 NCF1P14598 390 aaPredicted RBP11.63□□□□□ -0.55
VPS4A-201ENST00000254950 ECHS1P30084 290 aa11.63□□□□□ -0.55
VPS4A-201ENST00000254950 BOP1Q14137 746 aaKnown RBP11.63□□□□□ -0.55
VPS4A-201ENST00000254950 TBCCQ15814 346 aa11.63□□□□□ -0.55
VPS4A-201ENST00000254950 RSPO2Q6UXX9 243 aaPredicted RBP11.63□□□□□ -0.55
VPS4A-201ENST00000254950 CERS6Q6ZMG9 384 aa11.63□□□□□ -0.55
VPS4A-201ENST00000254950 SUGP1Q8IWZ8 645 aaKnown RBP11.63□□□□□ -0.55
VPS4A-201ENST00000254950 FBXO39Q8N4B4 442 aa11.63□□□□□ -0.55
VPS4A-201ENST00000254950 PCDH20Q8N6Y1 951 aaKnown RBP11.63□□□□□ -0.55
VPS4A-201ENST00000254950 TMEM159Q96B96 161 aa11.63□□□□□ -0.55
VPS4A-201ENST00000254950 SHCBP1LQ9BZQ2 653 aa11.63□□□□□ -0.55
VPS4A-201ENST00000254950 OSER1Q9NX31 292 aa11.63□□□□□ -0.55
VPS4A-201ENST00000254950 GNPTGQ9UJJ9 305 aa11.63□□□□□ -0.55
VPS4A-201ENST00000254950 ARHGAP26Q9UNA1 814 aa11.63□□□□□ -0.55
VPS4A-201ENST00000254950 LINC01553A4QN01 128 aa11.63□□□□□ -0.55
VPS4A-201ENST00000254950 KLHL2O95198 593 aa11.63□□□□□ -0.55
VPS4A-201ENST00000254950 PBLDP30039 288 aaPredicted RBP11.63□□□□□ -0.55
VPS4A-201ENST00000254950 CASP2P42575 452 aa11.63□□□□□ -0.55
VPS4A-201ENST00000254950 GPX6P59796 221 aa11.63□□□□□ -0.55
VPS4A-201ENST00000254950 ERVFC1P60507 584 aa11.63□□□□□ -0.55
VPS4A-201ENST00000254950 NTHL1P78549 312 aa11.63□□□□□ -0.55
VPS4A-201ENST00000254950 ITIH4Q14624 930 aa11.63□□□□□ -0.55
VPS4A-201ENST00000254950 PDK4Q16654 411 aa11.63□□□□□ -0.55
VPS4A-201ENST00000254950 CARD16Q5EG05 197 aa11.63□□□□□ -0.55
VPS4A-201ENST00000254950 RALGPS1Q5JS13 557 aa11.63□□□□□ -0.55
VPS4A-201ENST00000254950 CAMK1DQ8IU85 385 aa11.63□□□□□ -0.55
VPS4A-201ENST00000254950 RBFAQ8N0V3 343 aa11.63□□□□□ -0.55
VPS4A-201ENST00000254950 AHI1Q8N157 1196 aa11.63□□□□□ -0.55
VPS4A-201ENST00000254950 SNX31Q8N9S9 440 aa11.63□□□□□ -0.55
VPS4A-201ENST00000254950 BCL7CQ8WUZ0 217 aaPredicted RBP11.63□□□□□ -0.55
VPS4A-201ENST00000254950 KCTD4Q8WVF5 259 aa11.63□□□□□ -0.55
VPS4A-201ENST00000254950 ERLEC1Q96DZ1 483 aa11.63□□□□□ -0.55
VPS4A-201ENST00000254950 C1QTNF7Q9BXJ2 289 aa11.63□□□□□ -0.55
VPS4A-201ENST00000254950 ACE2Q9BYF1 805 aaPredicted RBP11.63□□□□□ -0.55
VPS4A-201ENST00000254950 GRXCR1A8MXD5 290 aa11.63□□□□□ -0.55
VPS4A-201ENST00000254950 E7ESA3 106 aa11.63□□□□□ -0.55
VPS4A-201ENST00000254950 BTN3A1O00481 513 aa11.63□□□□□ -0.55
VPS4A-201ENST00000254950 CCL22O00626 93 aa11.63□□□□□ -0.55
VPS4A-201ENST00000254950 PRMT5O14744 637 aaPredicted RBP11.63□□□□□ -0.55
VPS4A-201ENST00000254950 CFLARO15519 480 aa11.63□□□□□ -0.55
VPS4A-201ENST00000254950 PRPF4O43172 522 aaKnown RBP eCLIP11.63□□□□□ -0.55
VPS4A-201ENST00000254950 EPHX1P07099 455 aa11.63□□□□□ -0.55
VPS4A-201ENST00000254950 ELFN1P0C7U0 828 aa11.63□□□□□ -0.55
VPS4A-201ENST00000254950 MAPRE2Q15555 327 aa11.63□□□□□ -0.55
VPS4A-201ENST00000254950 HABP4Q5JVS0 413 aaKnown RBP11.63□□□□□ -0.55
VPS4A-201ENST00000254950 ZDHHC20Q5W0Z9 365 aa11.63□□□□□ -0.55
VPS4A-201ENST00000254950 ZNF398Q8TD17 642 aa11.63□□□□□ -0.55
VPS4A-201ENST00000254950 SERPINI1Q99574 410 aa11.63□□□□□ -0.55
VPS4A-201ENST00000254950 FEM1AQ9BSK4 669 aa11.63□□□□□ -0.55
VPS4A-201ENST00000254950 SPHK2Q9NRA0 654 aa11.63□□□□□ -0.55
VPS4A-201ENST00000254950 TTC24A2A3L6 582 aaPredicted RBP11.62□□□□□ -0.55
VPS4A-201ENST00000254950 RAD51BO15315 384 aa11.62□□□□□ -0.55
VPS4A-201ENST00000254950 HNRNPCL1O60812 293 aaKnown RBP11.62□□□□□ -0.55
VPS4A-201ENST00000254950 MZF1P28698 734 aaPredicted RBP11.62□□□□□ -0.55
VPS4A-201ENST00000254950 SKIV2L2P42285 1042 aaKnown RBP11.62□□□□□ -0.55
VPS4A-201ENST00000254950 SLC1A6P48664 564 aa11.62□□□□□ -0.55
VPS4A-201ENST00000254950 POLD2P49005 469 aa11.62□□□□□ -0.55
VPS4A-201ENST00000254950 PRKAA1Q13131 559 aa11.62□□□□□ -0.55
VPS4A-201ENST00000254950 TAF1AQ15573 450 aaPredicted RBP11.62□□□□□ -0.55
VPS4A-201ENST00000254950 SIRPB2Q5JXA9 342 aa11.62□□□□□ -0.55
VPS4A-201ENST00000254950 TRAF7Q6Q0C0 670 aa11.62□□□□□ -0.55
VPS4A-201ENST00000254950 SPPL3Q8TCT6 385 aa11.62□□□□□ -0.55
VPS4A-201ENST00000254950 OXNAD1Q96HP4 312 aaPredicted RBP11.62□□□□□ -0.55
VPS4A-201ENST00000254950 KLF16Q9BXK1 252 aaPredicted RBP11.62□□□□□ -0.55
VPS4A-201ENST00000254950 CAB39LQ9H9S4 337 aa11.62□□□□□ -0.55
VPS4A-201ENST00000254950 WASH4PA8MWX3 477 aa11.62□□□□□ -0.55
VPS4A-201ENST00000254950 VCLP18206 1134 aa11.62□□□□□ -0.55
VPS4A-201ENST00000254950 TFEBP19484 476 aa11.62□□□□□ -0.55
VPS4A-201ENST00000254950 DGKAP23743 735 aa11.62□□□□□ -0.55
VPS4A-201ENST00000254950 MPP1Q00013 466 aa11.62□□□□□ -0.55
VPS4A-201ENST00000254950 OLIG2Q13516 323 aa11.62□□□□□ -0.55
VPS4A-201ENST00000254950 INSCQ1MX18 579 aa11.62□□□□□ -0.55
VPS4A-201ENST00000254950 INO80DQ53TQ3 878 aaPredicted RBP11.62□□□□□ -0.55
VPS4A-201ENST00000254950 PITRM1Q5JRX3 1037 aa11.62□□□□□ -0.55
VPS4A-201ENST00000254950 SEL1L3Q68CR1 1132 aa11.62□□□□□ -0.55
VPS4A-201ENST00000254950 ANKS6Q68DC2 871 aa11.62□□□□□ -0.55
VPS4A-201ENST00000254950 ZCCHC23Q6ZST2 131 aa11.62□□□□□ -0.55
VPS4A-201ENST00000254950 PRPF39Q86UA1 669 aaKnown RBP11.62□□□□□ -0.55
VPS4A-201ENST00000254950 STAG3L4Q8TBR4 150 aa11.62□□□□□ -0.55
VPS4A-201ENST00000254950 TIFAQ96CG3 184 aa11.62□□□□□ -0.55
VPS4A-201ENST00000254950 IMP4Q96G21 291 aaKnown RBP11.62□□□□□ -0.55
VPS4A-201ENST00000254950 MYRFLQ96LU7 910 aa11.62□□□□□ -0.55
VPS4A-201ENST00000254950 TCF12Q99081 682 aa11.62□□□□□ -0.55
VPS4A-201ENST00000254950 ECT2Q9H8V3 914 aa11.62□□□□□ -0.55
VPS4A-201ENST00000254950 RXFP1Q9HBX9 757 aa11.62□□□□□ -0.55
VPS4A-201ENST00000254950 SCN10AQ9Y5Y9 1956 aa11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms