RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 GMIPQ9P107 970 aa21.41■■□□□ 1.02
TRIM28-201ENST00000253024 MYLKQ15746 1914 aa21.41■■□□□ 1.02
TRIM28-201ENST00000253024 C7orf72A4D263 438 aa21.4■■□□□ 1.02
TRIM28-201ENST00000253024 MRASO14807 208 aa21.4■■□□□ 1.02
TRIM28-201ENST00000253024 LINC00032P0C843 101 aa21.4■■□□□ 1.02
TRIM28-201ENST00000253024 SERPINH1P50454 418 aaKnown RBP21.4■■□□□ 1.02
TRIM28-201ENST00000253024 TSPY1Q01534 308 aa21.4■■□□□ 1.02
TRIM28-201ENST00000253024 SATB1Q01826 763 aa21.4■■□□□ 1.02
TRIM28-201ENST00000253024 TECRLQ5HYJ1 363 aa21.4■■□□□ 1.02
TRIM28-201ENST00000253024 IGSF8Q969P0 613 aa21.4■■□□□ 1.02
TRIM28-201ENST00000253024 IL12RB2Q99665 862 aa21.4■■□□□ 1.02
TRIM28-201ENST00000253024 RGS18Q9NS28 235 aa21.4■■□□□ 1.02
TRIM28-201ENST00000253024 PLOD2O00469 737 aa21.4■■□□□ 1.02
TRIM28-201ENST00000253024 YWHAHQ04917 246 aaPredicted RBP21.4■■□□□ 1.02
TRIM28-201ENST00000253024 MARC1Q5VT66 337 aa21.4■■□□□ 1.02
TRIM28-201ENST00000253024 ANKRD23Q86SG2 305 aa21.4■■□□□ 1.02
TRIM28-201ENST00000253024 TRPV1Q8NER1 839 aa21.4■■□□□ 1.02
TRIM28-201ENST00000253024 TRPC4APQ8TEL6 797 aa21.4■■□□□ 1.02
TRIM28-201ENST00000253024 RSPH1Q8WYR4 309 aa21.4■■□□□ 1.02
TRIM28-201ENST00000253024 PGAP3Q96FM1 320 aaPredicted RBP21.4■■□□□ 1.02
TRIM28-201ENST00000253024 SEMA4BQ9NPR2 832 aaPredicted RBP21.4■■□□□ 1.02
TRIM28-201ENST00000253024 CACNA2D2Q9NY47 1150 aa21.4■■□□□ 1.02
TRIM28-201ENST00000253024 TRAF6Q9Y4K3 522 aa21.4■■□□□ 1.02
TRIM28-201ENST00000253024 AKAP10O43572 662 aa21.39■■□□□ 1.02
TRIM28-201ENST00000253024 TFAP2AP05549 437 aa21.39■■□□□ 1.02
TRIM28-201ENST00000253024 NUP93Q8N1F7 819 aa21.39■■□□□ 1.02
TRIM28-201ENST00000253024 ZC3H15Q8WU90 426 aaKnown RBP21.39■■□□□ 1.02
TRIM28-201ENST00000253024 BHMTQ93088 406 aa21.39■■□□□ 1.02
TRIM28-201ENST00000253024 TMIGD2Q96BF3 282 aa21.39■■□□□ 1.02
TRIM28-201ENST00000253024 RPRD1AQ96P16 312 aaPredicted RBP21.39■■□□□ 1.02
TRIM28-201ENST00000253024 MID1IP1Q9NPA3 183 aa21.39■■□□□ 1.02
TRIM28-201ENST00000253024 TREX1Q9NSU2 369 aa21.39■■□□□ 1.02
TRIM28-201ENST00000253024 VWA7Q9Y334 891 aa21.39■■□□□ 1.02
TRIM28-201ENST00000253024 CROCCQ5TZA2 2017 aa21.39■■□□□ 1.02
TRIM28-201ENST00000253024 LTA4HP09960 611 aaKnown RBP21.39■■□□□ 1.01
TRIM28-201ENST00000253024 ADRA1AP35348 466 aa21.39■■□□□ 1.01
TRIM28-201ENST00000253024 HUNKP57058 714 aa21.39■■□□□ 1.01
TRIM28-201ENST00000253024 GRB7Q14451 532 aa21.39■■□□□ 1.01
TRIM28-201ENST00000253024 PTGR2Q8N8N7 351 aaPredicted RBP21.39■■□□□ 1.01
TRIM28-201ENST00000253024 SEMA3CQ99985 751 aa21.39■■□□□ 1.01
TRIM28-201ENST00000253024 ENTPD7Q9NQZ7 604 aa21.39■■□□□ 1.01
TRIM28-201ENST00000253024 PRPF19Q9UMS4 504 aaKnown RBP21.39■■□□□ 1.01
TRIM28-201ENST00000253024 PRDX6P30041 224 aa21.39■■□□□ 1.01
TRIM28-201ENST00000253024 AGAP9Q5VTM2 703 aa21.39■■□□□ 1.01
TRIM28-201ENST00000253024 HERC6Q8IVU3 1022 aa21.39■■□□□ 1.01
TRIM28-201ENST00000253024 CNDP1Q96KN2 507 aa21.39■■□□□ 1.01
TRIM28-201ENST00000253024 SPON2Q9BUD6 331 aa21.39■■□□□ 1.01
TRIM28-201ENST00000253024 SARS2Q9NP81 518 aaKnown RBP21.39■■□□□ 1.01
TRIM28-201ENST00000253024 ABCC13Q9NSE7 274 aa21.39■■□□□ 1.01
TRIM28-201ENST00000253024 ZDHHC7Q9NXF8 308 aa21.39■■□□□ 1.01
TRIM28-201ENST00000253024 PCDH10Q9P2E7 1040 aa21.39■■□□□ 1.01
TRIM28-201ENST00000253024 AP4S1Q9Y587 144 aa21.39■■□□□ 1.01
TRIM28-201ENST00000253024 NT5C1B-RDH14C9J2C7 533 aa21.38■■□□□ 1.01
TRIM28-201ENST00000253024 ACOT8O14734 319 aa21.38■■□□□ 1.01
TRIM28-201ENST00000253024 KIF3CO14782 793 aa21.38■■□□□ 1.01
TRIM28-201ENST00000253024 H2AFYO75367 372 aaKnown RBP21.38■■□□□ 1.01
TRIM28-201ENST00000253024 AIF1P55008 147 aa21.38■■□□□ 1.01
TRIM28-201ENST00000253024 SEMA3AQ14563 771 aa21.38■■□□□ 1.01
TRIM28-201ENST00000253024 GPR162Q16538 588 aa21.38■■□□□ 1.01
TRIM28-201ENST00000253024 MAP7D1Q3KQU3 841 aa21.38■■□□□ 1.01
TRIM28-201ENST00000253024 SIRPB2Q5JXA9 342 aa21.38■■□□□ 1.01
TRIM28-201ENST00000253024 KLC3Q6P597 504 aa21.38■■□□□ 1.01
TRIM28-201ENST00000253024 CD300LGQ6UXG3 332 aa21.38■■□□□ 1.01
TRIM28-201ENST00000253024 PIWIL4Q7Z3Z4 852 aaKnown RBP21.38■■□□□ 1.01
TRIM28-201ENST00000253024 ACBD6Q9BR61 282 aa21.38■■□□□ 1.01
TRIM28-201ENST00000253024 VTI1BQ9UEU0 232 aa21.38■■□□□ 1.01
TRIM28-201ENST00000253024 TSC2P49815 1807 aa21.38■■□□□ 1.01
TRIM28-201ENST00000253024 MUSKO15146 869 aa21.38■■□□□ 1.01
TRIM28-201ENST00000253024 ALDOCP09972 364 aaKnown RBP21.38■■□□□ 1.01
TRIM28-201ENST00000253024 GFAPP14136 432 aa21.38■■□□□ 1.01
TRIM28-201ENST00000253024 MAP3K21Q5TCX8 1036 aa21.38■■□□□ 1.01
TRIM28-201ENST00000253024 POTEHQ6S545 545 aa21.38■■□□□ 1.01
TRIM28-201ENST00000253024 MFN1Q8IWA4 741 aa21.38■■□□□ 1.01
TRIM28-201ENST00000253024 PGBD5Q8N414 524 aa21.38■■□□□ 1.01
TRIM28-201ENST00000253024 ZNF385DQ9H6B1 395 aa21.38■■□□□ 1.01
TRIM28-201ENST00000253024 CSNK1G1Q9HCP0 422 aa21.38■■□□□ 1.01
TRIM28-201ENST00000253024 C6orf203Q9P0P8 240 aaPredicted RBP21.38■■□□□ 1.01
TRIM28-201ENST00000253024 H3BMM5 538 aa21.37■■□□□ 1.01
TRIM28-201ENST00000253024 H3BSA7 217 aa21.37■■□□□ 1.01
TRIM28-201ENST00000253024 CDKN1CP49918 316 aaPredicted RBP21.37■■□□□ 1.01
TRIM28-201ENST00000253024 SH3BP2P78314 561 aa21.37■■□□□ 1.01
TRIM28-201ENST00000253024 MYLK3Q32MK0 819 aa21.37■■□□□ 1.01
TRIM28-201ENST00000253024 RTL3Q8N8U3 475 aaKnown RBP21.37■■□□□ 1.01
TRIM28-201ENST00000253024 CANT1Q8WVQ1 401 aa21.37■■□□□ 1.01
TRIM28-201ENST00000253024 VPS33AQ96AX1 596 aa21.37■■□□□ 1.01
TRIM28-201ENST00000253024 SOX17Q9H6I2 414 aaPredicted RBP21.37■■□□□ 1.01
TRIM28-201ENST00000253024 MGAT5BQ3V5L5 792 aa21.37■■□□□ 1.01
TRIM28-201ENST00000253024 RETREG3Q86VR2 466 aa21.37■■□□□ 1.01
TRIM28-201ENST00000253024 SPPL2CQ8IUH8 684 aa21.37■■□□□ 1.01
TRIM28-201ENST00000253024 RDH11Q8TC12 318 aa21.37■■□□□ 1.01
TRIM28-201ENST00000253024 GTF3C2Q8WUA4 911 aaPredicted RBP21.37■■□□□ 1.01
TRIM28-201ENST00000253024 FAM192AQ9GZU8 254 aa21.37■■□□□ 1.01
TRIM28-201ENST00000253024 NSMCE4AQ9NXX6 385 aa21.37■■□□□ 1.01
TRIM28-201ENST00000253024 USP22Q9UPT9 525 aa21.37■■□□□ 1.01
TRIM28-201ENST00000253024 A0A0D9SEW6 157 aa21.36■■□□□ 1.01
TRIM28-201ENST00000253024 TRPC5OSA6NMA1 111 aa21.36■■□□□ 1.01
TRIM28-201ENST00000253024 BCAS2O75934 225 aaPredicted RBP21.36■■□□□ 1.01
TRIM28-201ENST00000253024 NCK1P16333 377 aa21.36■■□□□ 1.01
TRIM28-201ENST00000253024 C10orf120Q5SQS8 335 aa21.36■■□□□ 1.01
TRIM28-201ENST00000253024 MORN1Q5T089 497 aa21.36■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms