RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 SYTL1Q8IYJ3 562 aa13.71□□□□□ -0.22
LDLR-201ENST00000252444 HMCESQ96FZ2 354 aa13.71□□□□□ -0.22
LDLR-201ENST00000252444 FLRT1Q9NZU1 646 aa13.71□□□□□ -0.22
LDLR-201ENST00000252444 DNAJC16Q9Y2G8 782 aa13.71□□□□□ -0.22
LDLR-201ENST00000252444 RGS1Q08116 209 aa13.7□□□□□ -0.22
LDLR-201ENST00000252444 FAM126BQ8IXS8 530 aa13.7□□□□□ -0.22
LDLR-201ENST00000252444 ST13P4Q8IZP2 240 aaPredicted RBP13.7□□□□□ -0.22
LDLR-201ENST00000252444 LINC01465Q8N7H1 131 aa13.7□□□□□ -0.22
LDLR-201ENST00000252444 AHCYL2Q96HN2 611 aaKnown RBP13.7□□□□□ -0.22
LDLR-201ENST00000252444 POPDC3Q9HBV1 291 aa13.7□□□□□ -0.22
LDLR-201ENST00000252444 CHCHD3Q9NX63 227 aaKnown RBP13.7□□□□□ -0.22
LDLR-201ENST00000252444 VWA7Q9Y334 891 aa13.7□□□□□ -0.22
LDLR-201ENST00000252444 TPH1P17752 444 aa13.7□□□□□ -0.22
LDLR-201ENST00000252444 MARCKSL1P49006 195 aa13.7□□□□□ -0.22
LDLR-201ENST00000252444 DSC3Q14574 896 aa13.7□□□□□ -0.22
LDLR-201ENST00000252444 PATL1Q86TB9 770 aaKnown RBP13.7□□□□□ -0.22
LDLR-201ENST00000252444 OSBPL6Q9BZF3 934 aa13.7□□□□□ -0.22
LDLR-201ENST00000252444 ZNF556Q9HAH1 456 aa13.7□□□□□ -0.22
LDLR-201ENST00000252444 MPP6Q9NZW5 540 aa13.7□□□□□ -0.22
LDLR-201ENST00000252444 BLOC1S6Q9UL45 172 aa13.7□□□□□ -0.22
LDLR-201ENST00000252444 AP2A2O94973 939 aa13.7□□□□□ -0.22
LDLR-201ENST00000252444 SERPIND1P05546 499 aa13.7□□□□□ -0.22
LDLR-201ENST00000252444 ALPPL2P10696 532 aa13.7□□□□□ -0.22
LDLR-201ENST00000252444 SLC39A11Q8N1S5 342 aa13.7□□□□□ -0.22
LDLR-201ENST00000252444 NATD1Q8N6N6 113 aa13.7□□□□□ -0.22
LDLR-201ENST00000252444 OR9Q1Q8NGQ5 310 aa13.7□□□□□ -0.22
LDLR-201ENST00000252444 PCDH19Q8TAB3 1148 aa13.7□□□□□ -0.22
LDLR-201ENST00000252444 CLP1Q92989 425 aaKnown RBP13.7□□□□□ -0.22
LDLR-201ENST00000252444 FAM83DQ9H4H8 585 aa13.7□□□□□ -0.22
LDLR-201ENST00000252444 TCF7L2Q9NQB0 619 aa13.7□□□□□ -0.22
LDLR-201ENST00000252444 ARL15Q9NXU5 204 aa13.7□□□□□ -0.22
LDLR-201ENST00000252444 IL36AQ9UHA7 158 aa13.7□□□□□ -0.22
LDLR-201ENST00000252444 ADGRE2Q9UHX3 823 aa13.7□□□□□ -0.22
LDLR-201ENST00000252444 NUDT5Q9UKK9 219 aa13.7□□□□□ -0.22
LDLR-201ENST00000252444 SCML1Q9UN30 329 aa13.7□□□□□ -0.22
LDLR-201ENST00000252444 RAP2CQ9Y3L5 183 aa13.7□□□□□ -0.22
LDLR-201ENST00000252444 TAF1P21675 1872 aa13.7□□□□□ -0.22
LDLR-201ENST00000252444 TPP1O14773 563 aa13.7□□□□□ -0.22
LDLR-201ENST00000252444 IDSP22304 550 aa13.7□□□□□ -0.22
LDLR-201ENST00000252444 CCND1P24385 295 aa13.7□□□□□ -0.22
LDLR-201ENST00000252444 SSTR1P30872 391 aa13.7□□□□□ -0.22
LDLR-201ENST00000252444 RPA3P35244 121 aaPredicted RBP13.7□□□□□ -0.22
LDLR-201ENST00000252444 SQLEQ14534 574 aa13.7□□□□□ -0.22
LDLR-201ENST00000252444 INO80DQ53TQ3 878 aaPredicted RBP13.7□□□□□ -0.22
LDLR-201ENST00000252444 C10orf62Q5T681 223 aaPredicted RBP13.7□□□□□ -0.22
LDLR-201ENST00000252444 SNX30Q5VWJ9 437 aa13.7□□□□□ -0.22
LDLR-201ENST00000252444 ZNF776Q68DI1 518 aaPredicted RBP13.7□□□□□ -0.22
LDLR-201ENST00000252444 ZCCHC8Q6NZY4 707 aaKnown RBP13.7□□□□□ -0.22
LDLR-201ENST00000252444 RAVER1Q8IY67 606 aaKnown RBP13.7□□□□□ -0.22
LDLR-201ENST00000252444 CD101Q93033 1021 aa13.7□□□□□ -0.22
LDLR-201ENST00000252444 TRIB3Q96RU7 358 aa13.7□□□□□ -0.22
LDLR-201ENST00000252444 C17orf80Q9BSJ5 609 aa13.7□□□□□ -0.22
LDLR-201ENST00000252444 ZSCAN5AQ9BUG6 496 aa13.7□□□□□ -0.22
LDLR-201ENST00000252444 SPASTQ9UBP0 616 aa13.7□□□□□ -0.22
LDLR-201ENST00000252444 SCOCQ9UIL1 159 aa13.7□□□□□ -0.22
LDLR-201ENST00000252444 RELL1Q8IUW5 271 aa13.69□□□□□ -0.22
LDLR-201ENST00000252444 ZNF567Q8N184 647 aa13.69□□□□□ -0.22
LDLR-201ENST00000252444 MIER2Q8N344 545 aa13.69□□□□□ -0.22
LDLR-201ENST00000252444 GRIN3AQ8TCU5 1115 aa13.69□□□□□ -0.22
LDLR-201ENST00000252444 PLEKHO2Q8TD55 490 aa13.69□□□□□ -0.22
LDLR-201ENST00000252444 CKAP2Q8WWK9 683 aa13.69□□□□□ -0.22
LDLR-201ENST00000252444 SPDL1Q96EA4 605 aa13.69□□□□□ -0.22
LDLR-201ENST00000252444 IKZF4Q9H2S9 585 aa13.69□□□□□ -0.22
LDLR-201ENST00000252444 OSGEPL1Q9H4B0 414 aa13.69□□□□□ -0.22
LDLR-201ENST00000252444 C16orf96A6NNT2 1141 aa13.69□□□□□ -0.22
LDLR-201ENST00000252444 CCNT2O60583 730 aaKnown RBP13.69□□□□□ -0.22
LDLR-201ENST00000252444 KCNJ13O60928 360 aa13.69□□□□□ -0.22
LDLR-201ENST00000252444 MAP3K6O95382 1288 aa13.69□□□□□ -0.22
LDLR-201ENST00000252444 PTGIRP43119 386 aa13.69□□□□□ -0.22
LDLR-201ENST00000252444 NEK3P51956 506 aa13.69□□□□□ -0.22
LDLR-201ENST00000252444 SLC18A1P54219 525 aa13.69□□□□□ -0.22
LDLR-201ENST00000252444 HABP4Q5JVS0 413 aaKnown RBP13.69□□□□□ -0.22
LDLR-201ENST00000252444 UMODL1-AS1Q8N2C9 162 aa13.69□□□□□ -0.22
LDLR-201ENST00000252444 TCP10LQ8TDR4 215 aa13.69□□□□□ -0.22
LDLR-201ENST00000252444 CCDC138Q96M89 665 aa13.69□□□□□ -0.22
LDLR-201ENST00000252444 MYADML2A6NDP7 307 aa13.69□□□□□ -0.22
LDLR-201ENST00000252444 SNTNA6NMZ2 147 aa13.69□□□□□ -0.22
LDLR-201ENST00000252444 ADSLP30566 484 aaPredicted RBP13.69□□□□□ -0.22
LDLR-201ENST00000252444 ABL2P42684 1182 aa13.69□□□□□ -0.22
LDLR-201ENST00000252444 NSG1P42857 185 aa13.69□□□□□ -0.22
LDLR-201ENST00000252444 UNC5AQ6ZN44 842 aa13.69□□□□□ -0.22
LDLR-201ENST00000252444 SZRD1Q7Z422 152 aa13.69□□□□□ -0.22
LDLR-201ENST00000252444 SNX20Q7Z614 316 aa13.69□□□□□ -0.22
LDLR-201ENST00000252444 ZBTB2Q8N680 514 aa13.69□□□□□ -0.22
LDLR-201ENST00000252444 ZNF555Q8NEP9 628 aa13.69□□□□□ -0.22
LDLR-201ENST00000252444 DIS3LQ8TF46 1054 aaKnown RBP13.69□□□□□ -0.22
LDLR-201ENST00000252444 RANBP9Q96S59 729 aa13.69□□□□□ -0.22
LDLR-201ENST00000252444 DPY30Q9C005 99 aa13.69□□□□□ -0.22
LDLR-201ENST00000252444 POMKQ9H5K3 350 aa13.69□□□□□ -0.22
LDLR-201ENST00000252444 MLXIPLQ9NP71 852 aa13.69□□□□□ -0.22
LDLR-201ENST00000252444 RABGEF1Q9UJ41 708 aa13.69□□□□□ -0.22
LDLR-201ENST00000252444 NDUFAF1Q9Y375 327 aa13.69□□□□□ -0.22
LDLR-201ENST00000252444 KIAA0355O15063 1070 aa13.69□□□□□ -0.22
LDLR-201ENST00000252444 ENO1P06733 434 aaKnown RBP13.69□□□□□ -0.22
LDLR-201ENST00000252444 VIPR1P32241 457 aa13.69□□□□□ -0.22
LDLR-201ENST00000252444 LIMK2P53671 638 aa13.69□□□□□ -0.22
LDLR-201ENST00000252444 BOP1Q14137 746 aaKnown RBP13.69□□□□□ -0.22
LDLR-201ENST00000252444 ITPRIPL2Q3MIP1 535 aa13.69□□□□□ -0.22
LDLR-201ENST00000252444 XKR4Q5GH76 650 aa13.69□□□□□ -0.22
LDLR-201ENST00000252444 CPT1BQ92523 772 aa13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 68.1 ms