RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 AP1S1P61966 158 aa20.24■□□□□ 0.83
CLN3-250ENST00000636839 TMPRSS15P98073 1019 aa20.24■□□□□ 0.83
CLN3-250ENST00000636839 SKIV2LQ15477 1246 aaKnown RBP20.24■□□□□ 0.83
CLN3-250ENST00000636839 QPCTQ16769 361 aa20.24■□□□□ 0.83
CLN3-250ENST00000636839 AAK1Q2M2I8 961 aa20.24■□□□□ 0.83
CLN3-250ENST00000636839 GRAMD4Q6IC98 578 aa20.24■□□□□ 0.83
CLN3-250ENST00000636839 RASSF3Q86WH2 238 aa20.24■□□□□ 0.83
CLN3-250ENST00000636839 CPA6Q8N4T0 437 aa20.24■□□□□ 0.83
CLN3-250ENST00000636839 MDGA1Q8NFP4 955 aa20.24■□□□□ 0.83
CLN3-250ENST00000636839 OR13J1Q8NGT2 312 aa20.24■□□□□ 0.83
CLN3-250ENST00000636839 OR2A12Q8NGT7 310 aa20.24■□□□□ 0.83
CLN3-250ENST00000636839 NECTIN4Q96NY8 510 aa20.24■□□□□ 0.83
CLN3-250ENST00000636839 EPS15L1Q9UBC2 864 aa20.24■□□□□ 0.83
CLN3-250ENST00000636839 PRKAG3Q9UGI9 489 aa20.24■□□□□ 0.83
CLN3-250ENST00000636839 MROH6A6NGR9 719 aa20.23■□□□□ 0.83
CLN3-250ENST00000636839 ANKRD66B4E2M5 251 aa20.23■□□□□ 0.83
CLN3-250ENST00000636839 SLC4A1P02730 911 aa20.23■□□□□ 0.83
CLN3-250ENST00000636839 ALPIP09923 528 aa20.23■□□□□ 0.83
CLN3-250ENST00000636839 ABCG1P45844 678 aa20.23■□□□□ 0.83
CLN3-250ENST00000636839 ARCN1P48444 511 aaKnown RBP20.23■□□□□ 0.83
CLN3-250ENST00000636839 SNRPD1P62314 119 aaKnown RBP20.23■□□□□ 0.83
CLN3-250ENST00000636839 SEMG2Q02383 582 aa20.23■□□□□ 0.83
CLN3-250ENST00000636839 MGAT5Q09328 741 aa20.23■□□□□ 0.83
CLN3-250ENST00000636839 CARD16Q5EG05 197 aa20.23■□□□□ 0.83
CLN3-250ENST00000636839 TSTD2Q5T7W7 516 aa20.23■□□□□ 0.83
CLN3-250ENST00000636839 CYS1Q717R9 158 aa20.23■□□□□ 0.83
CLN3-250ENST00000636839 SRRM1Q8IYB3 904 aaKnown RBP20.23■□□□□ 0.83
CLN3-250ENST00000636839 ISG20Q96AZ6 181 aaKnown RBP20.23■□□□□ 0.83
CLN3-250ENST00000636839 CDX2Q99626 313 aaPredicted RBP20.23■□□□□ 0.83
CLN3-250ENST00000636839 ZDHHC6Q9H6R6 413 aa20.23■□□□□ 0.83
CLN3-250ENST00000636839 SUDS3Q9H7L9 328 aaPredicted RBP20.23■□□□□ 0.83
CLN3-250ENST00000636839 IARS2Q9NSE4 1012 aaKnown RBP20.23■□□□□ 0.83
CLN3-250ENST00000636839 FETUBQ9UGM5 382 aa20.23■□□□□ 0.83
CLN3-250ENST00000636839 ARIH1Q9Y4X5 557 aaPredicted RBP20.23■□□□□ 0.83
CLN3-250ENST00000636839 HEATR9A2RTY3 570 aa20.22■□□□□ 0.83
CLN3-250ENST00000636839 HMX2A2RU54 273 aa20.22■□□□□ 0.83
CLN3-250ENST00000636839 C2CD4DB7Z1M9 353 aa20.22■□□□□ 0.83
CLN3-250ENST00000636839 PGLSO95336 258 aa20.22■□□□□ 0.83
CLN3-250ENST00000636839 INHBAP08476 426 aa20.22■□□□□ 0.83
CLN3-250ENST00000636839 CSNK1DP48730 415 aa20.22■□□□□ 0.83
CLN3-250ENST00000636839 BCL2L1Q07817 233 aa20.22■□□□□ 0.83
CLN3-250ENST00000636839 BMPR2Q13873 1038 aa20.22■□□□□ 0.83
CLN3-250ENST00000636839 KCNMB4Q86W47 210 aa20.22■□□□□ 0.83
CLN3-250ENST00000636839 SLC26A11Q86WA9 606 aa20.22■□□□□ 0.83
CLN3-250ENST00000636839 MZB1Q8WU39 189 aa20.22■□□□□ 0.83
CLN3-250ENST00000636839 PIH1D2Q8WWB5 315 aa20.22■□□□□ 0.83
CLN3-250ENST00000636839 KLF6Q99612 283 aaPredicted RBP20.22■□□□□ 0.83
CLN3-250ENST00000636839 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP20.22■□□□□ 0.83
CLN3-250ENST00000636839 HCN2Q9UL51 889 aa20.22■□□□□ 0.83
CLN3-250ENST00000636839 OR51F1A6NGY5 319 aa20.22■□□□□ 0.83
CLN3-250ENST00000636839 WASH3PC4AMC7 463 aa20.22■□□□□ 0.83
CLN3-250ENST00000636839 ANHXE9PGG2 379 aa20.22■□□□□ 0.83
CLN3-250ENST00000636839 ALADP13716 330 aa20.22■□□□□ 0.83
CLN3-250ENST00000636839 HLA-EP13747 358 aa20.22■□□□□ 0.83
CLN3-250ENST00000636839 NR1D1P20393 614 aa20.22■□□□□ 0.83
CLN3-250ENST00000636839 TEDDM1Q5T9Z0 273 aa20.22■□□□□ 0.83
CLN3-250ENST00000636839 CROCCP2Q86T23 111 aa20.22■□□□□ 0.83
CLN3-250ENST00000636839 METTL3Q86U44 580 aaKnown RBP20.22■□□□□ 0.83
CLN3-250ENST00000636839 PCDH20Q8N6Y1 951 aaKnown RBP20.22■□□□□ 0.83
CLN3-250ENST00000636839 OR13C4Q8NGS5 318 aa20.22■□□□□ 0.83
CLN3-250ENST00000636839 GRIN3AQ8TCU5 1115 aa20.22■□□□□ 0.83
CLN3-250ENST00000636839 RANBP9Q96S59 729 aa20.22■□□□□ 0.83
CLN3-250ENST00000636839 ADGRE3Q9BY15 652 aa20.22■□□□□ 0.83
CLN3-250ENST00000636839 GGT7Q9UJ14 662 aa20.22■□□□□ 0.83
CLN3-250ENST00000636839 TBC1D3BA6NDS4 549 aa20.21■□□□□ 0.83
CLN3-250ENST00000636839 A8MX80 341 aa20.21■□□□□ 0.83
CLN3-250ENST00000636839 HTRA2O43464 458 aaPredicted RBP20.21■□□□□ 0.83
CLN3-250ENST00000636839 ATP5BP06576 529 aaKnown RBP20.21■□□□□ 0.83
CLN3-250ENST00000636839 KRT15P19012 456 aa20.21■□□□□ 0.83
CLN3-250ENST00000636839 NR1H3Q13133 447 aa20.21■□□□□ 0.83
CLN3-250ENST00000636839 ARMC12Q5T9G4 340 aa20.21■□□□□ 0.83
CLN3-250ENST00000636839 EMC10Q5UCC4 262 aa20.21■□□□□ 0.83
CLN3-250ENST00000636839 FAM76AQ8TAV0 307 aa20.21■□□□□ 0.83
CLN3-250ENST00000636839 MDM1Q8TC05 714 aa20.21■□□□□ 0.83
CLN3-250ENST00000636839 BRSK1Q8TDC3 778 aa20.21■□□□□ 0.83
CLN3-250ENST00000636839 DNAJC1Q96KC8 554 aaKnown RBP20.21■□□□□ 0.83
CLN3-250ENST00000636839 CEP44Q9C0F1 390 aa20.21■□□□□ 0.83
CLN3-250ENST00000636839 UBE2ZQ9H832 354 aaPredicted RBP20.21■□□□□ 0.83
CLN3-250ENST00000636839 BRD9Q9H8M2 597 aa20.21■□□□□ 0.83
CLN3-250ENST00000636839 MRM3Q9HC36 420 aaKnown RBP20.21■□□□□ 0.83
CLN3-250ENST00000636839 ZFATQ9P243 1243 aa20.21■□□□□ 0.83
CLN3-250ENST00000636839 IKBKGQ9Y6K9 419 aa20.21■□□□□ 0.83
CLN3-250ENST00000636839 CXorf51AA0A1B0GTR3 108 aa20.2■□□□□ 0.83
CLN3-250ENST00000636839 GOLGA8RI6L899 631 aa20.2■□□□□ 0.83
CLN3-250ENST00000636839 UGT2B4P06133 528 aa20.2■□□□□ 0.83
CLN3-250ENST00000636839 ITPRIPL2Q3MIP1 535 aa20.2■□□□□ 0.83
CLN3-250ENST00000636839 RALGPS1Q5JS13 557 aa20.2■□□□□ 0.83
CLN3-250ENST00000636839 LRRC73Q5JTD7 316 aa20.2■□□□□ 0.83
CLN3-250ENST00000636839 TRABD2AQ86V40 505 aa20.2■□□□□ 0.83
CLN3-250ENST00000636839 DENND6AQ8IWF6 608 aa20.2■□□□□ 0.83
CLN3-250ENST00000636839 TERB1Q8NA31 727 aa20.2■□□□□ 0.83
CLN3-250ENST00000636839 WFIKKN2Q8TEU8 576 aa20.2■□□□□ 0.83
CLN3-250ENST00000636839 PTCD2Q8WV60 388 aaKnown RBP20.2■□□□□ 0.83
CLN3-250ENST00000636839 PTPRN2Q92932 1015 aa20.2■□□□□ 0.83
CLN3-250ENST00000636839 ATP13A3Q9H7F0 1226 aa20.2■□□□□ 0.83
CLN3-250ENST00000636839 LIMD1Q9UGP4 676 aa20.2■□□□□ 0.83
CLN3-250ENST00000636839 MBTPS2O43462 519 aa20.2■□□□□ 0.82
CLN3-250ENST00000636839 GSRP00390 522 aa20.2■□□□□ 0.82
CLN3-250ENST00000636839 EPHB1P54762 984 aa20.2■□□□□ 0.82
CLN3-250ENST00000636839 POM121L1PQ3SYA9 428 aa20.2■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms