RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 MRPL43Q8N983 215 aaKnown RBP15.82■□□□□ 0.12
CPSF1-213ENST00000620219 OR52K2Q8NGK3 314 aa15.82■□□□□ 0.12
CPSF1-213ENST00000620219 CYB5D2Q8WUJ1 264 aa15.82■□□□□ 0.12
CPSF1-213ENST00000620219 FAM161BQ96MY7 647 aa15.82■□□□□ 0.12
CPSF1-213ENST00000620219 CASS4Q9NQ75 786 aa15.82■□□□□ 0.12
CPSF1-213ENST00000620219 SKAP2O75563 359 aaPredicted RBP15.82■□□□□ 0.12
CPSF1-213ENST00000620219 HAUS5O94927 633 aa15.82■□□□□ 0.12
CPSF1-213ENST00000620219 BST1Q10588 318 aa15.82■□□□□ 0.12
CPSF1-213ENST00000620219 SPRED3Q2MJR0 410 aa15.82■□□□□ 0.12
CPSF1-213ENST00000620219 USP13Q92995 863 aaPredicted RBP15.82■□□□□ 0.12
CPSF1-213ENST00000620219 MRGPRX2Q96LB1 330 aa15.82■□□□□ 0.12
CPSF1-213ENST00000620219 TACO1Q9BSH4 297 aaKnown RBP15.82■□□□□ 0.12
CPSF1-213ENST00000620219 LINC00597Q9H2U6 94 aa15.82■□□□□ 0.12
CPSF1-213ENST00000620219 ZDHHC4Q9NPG8 344 aa15.82■□□□□ 0.12
CPSF1-213ENST00000620219 RFXAPO00287 272 aa15.82■□□□□ 0.12
CPSF1-213ENST00000620219 ABLIM3O94929 683 aa15.82■□□□□ 0.12
CPSF1-213ENST00000620219 CBX6O95503 412 aa15.82■□□□□ 0.12
CPSF1-213ENST00000620219 E2F5Q15329 346 aa15.82■□□□□ 0.12
CPSF1-213ENST00000620219 SPNS2Q8IVW8 549 aa15.82■□□□□ 0.12
CPSF1-213ENST00000620219 GDPD5Q8WTR4 605 aa15.82■□□□□ 0.12
CPSF1-213ENST00000620219 DCUN1D1Q96GG9 259 aa15.82■□□□□ 0.12
CPSF1-213ENST00000620219 SMIM14Q96QK8 99 aa15.82■□□□□ 0.12
CPSF1-213ENST00000620219 ATP13A3Q9H7F0 1226 aa15.82■□□□□ 0.12
CPSF1-213ENST00000620219 DUS2Q9NX74 493 aaKnown RBP15.82■□□□□ 0.12
CPSF1-213ENST00000620219 VPS51Q9UID3 782 aa15.82■□□□□ 0.12
CPSF1-213ENST00000620219 TRMT6Q9UJA5 497 aaKnown RBP15.82■□□□□ 0.12
CPSF1-213ENST00000620219 GOLGA8QA0A0J9YX86 632 aa15.81■□□□□ 0.12
CPSF1-213ENST00000620219 GOLGA8OA6NCC3 632 aa15.81■□□□□ 0.12
CPSF1-213ENST00000620219 GOLGA8NF8WBI6 632 aa15.81■□□□□ 0.12
CPSF1-213ENST00000620219 PIGNO95427 931 aa15.81■□□□□ 0.12
CPSF1-213ENST00000620219 NFKBIAP25963 317 aa15.81■□□□□ 0.12
CPSF1-213ENST00000620219 HADHAP40939 763 aa15.81■□□□□ 0.12
CPSF1-213ENST00000620219 AQP5P55064 265 aa15.81■□□□□ 0.12
CPSF1-213ENST00000620219 PDCD2Q16342 344 aaPredicted RBP15.81■□□□□ 0.12
CPSF1-213ENST00000620219 PTPRNQ16849 979 aa15.81■□□□□ 0.12
CPSF1-213ENST00000620219 FSCBQ5H9T9 825 aa15.81■□□□□ 0.12
CPSF1-213ENST00000620219 AGAP9Q5VTM2 703 aa15.81■□□□□ 0.12
CPSF1-213ENST00000620219 CHST9Q7L1S5 443 aa15.81■□□□□ 0.12
CPSF1-213ENST00000620219 SLC46A2Q9BY10 475 aa15.81■□□□□ 0.12
CPSF1-213ENST00000620219 PRPF4O43172 522 aaKnown RBP eCLIP15.81■□□□□ 0.121e-7■■■■■ 26.8
CPSF1-213ENST00000620219 SMIM24O75264 130 aa15.81■□□□□ 0.12
CPSF1-213ENST00000620219 TSPAN8P19075 237 aa15.81■□□□□ 0.12
CPSF1-213ENST00000620219 VIPR2P41587 438 aa15.81■□□□□ 0.12
CPSF1-213ENST00000620219 NAGLUP54802 743 aa15.81■□□□□ 0.12
CPSF1-213ENST00000620219 TSTD2Q5T7W7 516 aa15.81■□□□□ 0.12
CPSF1-213ENST00000620219 C6orf163Q5TEZ5 329 aa15.81■□□□□ 0.12
CPSF1-213ENST00000620219 CES5AQ6NT32 575 aa15.81■□□□□ 0.12
CPSF1-213ENST00000620219 CNSTQ6PJW8 725 aa15.81■□□□□ 0.12
CPSF1-213ENST00000620219 APCDD1Q8J025 514 aa15.81■□□□□ 0.12
CPSF1-213ENST00000620219 OR4L1Q8NH43 312 aa15.81■□□□□ 0.12
CPSF1-213ENST00000620219 RFWD2Q8NHY2 731 aa15.81■□□□□ 0.12
CPSF1-213ENST00000620219 IL12RB2Q99665 862 aa15.81■□□□□ 0.12
CPSF1-213ENST00000620219 CLPBQ9H078 707 aa15.81■□□□□ 0.12
CPSF1-213ENST00000620219 ASB8Q9H765 288 aa15.81■□□□□ 0.12
CPSF1-213ENST00000620219 CD3EAPO15446 510 aaKnown RBP15.81■□□□□ 0.12
CPSF1-213ENST00000620219 LPOP22079 712 aaPredicted RBP15.81■□□□□ 0.12
CPSF1-213ENST00000620219 OVCA2Q8WZ82 227 aa15.81■□□□□ 0.12
CPSF1-213ENST00000620219 ACTR5Q9H9F9 607 aaPredicted RBP15.81■□□□□ 0.12
CPSF1-213ENST00000620219 LMCD1Q9NZU5 365 aa15.81■□□□□ 0.12
CPSF1-213ENST00000620219 ZNF236Q9UL36 1845 aa15.81■□□□□ 0.12
CPSF1-213ENST00000620219 ATP5BP06576 529 aaKnown RBP15.8■□□□□ 0.12
CPSF1-213ENST00000620219 PYGLP06737 847 aa15.8■□□□□ 0.12
CPSF1-213ENST00000620219 ITGALP20701 1170 aa15.8■□□□□ 0.12
CPSF1-213ENST00000620219 MC4RP32245 332 aa15.8■□□□□ 0.12
CPSF1-213ENST00000620219 SLC1A2P43004 574 aa15.8■□□□□ 0.12
CPSF1-213ENST00000620219 TRIM68Q6AZZ1 485 aa15.8■□□□□ 0.12
CPSF1-213ENST00000620219 TMEM25Q86YD3 366 aa15.8■□□□□ 0.12
CPSF1-213ENST00000620219 ALG9Q9H6U8 611 aa15.8■□□□□ 0.12
CPSF1-213ENST00000620219 STK39Q9UEW8 545 aa15.8■□□□□ 0.12
CPSF1-213ENST00000620219 FBXO48Q5FWF7 155 aa15.8■□□□□ 0.12
CPSF1-213ENST00000620219 SETD3Q86TU7 594 aaPredicted RBP15.8■□□□□ 0.12
CPSF1-213ENST00000620219 SORCS1Q8WY21 1168 aa15.8■□□□□ 0.12
CPSF1-213ENST00000620219 MOCOSQ96EN8 888 aa15.8■□□□□ 0.12
CPSF1-213ENST00000620219 MYO19Q96H55 970 aa15.8■□□□□ 0.12
CPSF1-213ENST00000620219 RBBP8Q99708 897 aa15.8■□□□□ 0.12
CPSF1-213ENST00000620219 FEM1AQ9BSK4 669 aa15.8■□□□□ 0.12
CPSF1-213ENST00000620219 RHOJQ9H4E5 214 aa15.8■□□□□ 0.12
CPSF1-213ENST00000620219 LINC01553A4QN01 128 aa15.8■□□□□ 0.12
CPSF1-213ENST00000620219 FAM159BA6NKW6 160 aa15.8■□□□□ 0.12
CPSF1-213ENST00000620219 STK25O00506 426 aa15.8■□□□□ 0.12
CPSF1-213ENST00000620219 SLC9A3R1O14745 358 aaPredicted RBP15.8■□□□□ 0.12
CPSF1-213ENST00000620219 TYROBPO43914 113 aa15.8■□□□□ 0.12
CPSF1-213ENST00000620219 RASSF2P50749 326 aa15.8■□□□□ 0.12
CPSF1-213ENST00000620219 C9orf50Q5SZB4 431 aa15.8■□□□□ 0.12
CPSF1-213ENST00000620219 SERPINA13PQ6UXR4 307 aa15.8■□□□□ 0.12
CPSF1-213ENST00000620219 TMEM120AQ9BXJ8 343 aa15.8■□□□□ 0.12
CPSF1-213ENST00000620219 ZBP1Q9H171 429 aa15.8■□□□□ 0.12
CPSF1-213ENST00000620219 CD274Q9NZQ7 290 aa15.8■□□□□ 0.12
CPSF1-213ENST00000620219 TMEM216Q9P0N5 145 aa15.8■□□□□ 0.12
CPSF1-213ENST00000620219 ZNF510Q9Y2H8 683 aa15.8■□□□□ 0.12
CPSF1-213ENST00000620219 LOC100653049A0A140TA62 436 aa15.8■□□□□ 0.12
CPSF1-213ENST00000620219 EDF1O60869 148 aaKnown RBP15.8■□□□□ 0.12
CPSF1-213ENST00000620219 KRT34O76011 436 aa15.8■□□□□ 0.12
CPSF1-213ENST00000620219 ENO1P06733 434 aaKnown RBP15.8■□□□□ 0.12
CPSF1-213ENST00000620219 SERPINB3P29508 390 aa15.8■□□□□ 0.12
CPSF1-213ENST00000620219 IRF9Q00978 393 aa15.8■□□□□ 0.12
CPSF1-213ENST00000620219 EMC10Q5UCC4 262 aa15.8■□□□□ 0.12
CPSF1-213ENST00000620219 NKX2-4Q9H2Z4 354 aa15.8■□□□□ 0.12
CPSF1-213ENST00000620219 EBF3Q9H4W6 596 aa15.8■□□□□ 0.12
CPSF1-213ENST00000620219 THG1LQ9NWX6 298 aaKnown RBP15.8■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms