RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 TGDSO95455 350 aa14.07□□□□□ -0.16
CPSF1-212ENST00000616140 CRATP43155 626 aa14.07□□□□□ -0.16
CPSF1-212ENST00000616140 USP46P62068 366 aa14.07□□□□□ -0.16
CPSF1-212ENST00000616140 PFKPQ01813 784 aa14.07□□□□□ -0.16
CPSF1-212ENST00000616140 BNIP2Q12982 314 aa14.07□□□□□ -0.16
CPSF1-212ENST00000616140 PSMD5Q16401 504 aa14.07□□□□□ -0.16
CPSF1-212ENST00000616140 CNSTQ6PJW8 725 aa14.07□□□□□ -0.16
CPSF1-212ENST00000616140 GK5Q6ZS86 529 aa14.07□□□□□ -0.16
CPSF1-212ENST00000616140 DET1Q7L5Y6 550 aa14.07□□□□□ -0.16
CPSF1-212ENST00000616140 RD3Q7Z3Z2 195 aa14.07□□□□□ -0.16
CPSF1-212ENST00000616140 FGD2Q7Z6J4 655 aa14.07□□□□□ -0.16
CPSF1-212ENST00000616140 RTKNQ9BST9 563 aa14.07□□□□□ -0.16
CPSF1-212ENST00000616140 OSBPL11Q9BXB4 747 aa14.07□□□□□ -0.16
CPSF1-212ENST00000616140 NUAK2Q9H093 628 aa14.07□□□□□ -0.16
CPSF1-212ENST00000616140 NOL6Q9H6R4 1146 aaKnown RBP14.07□□□□□ -0.16
CPSF1-212ENST00000616140 KRCC1Q9NPI7 259 aaPredicted RBP14.07□□□□□ -0.16
CPSF1-212ENST00000616140 WRAP73Q9P2S5 460 aaPredicted RBP14.07□□□□□ -0.16
CPSF1-212ENST00000616140 COMMD3-BMI1R4GMX3 469 aa14.07□□□□□ -0.16
CPSF1-212ENST00000616140 CNTNAP1P78357 1384 aa14.07□□□□□ -0.16
CPSF1-212ENST00000616140 PNMA8CA0A1B0GUJ8 204 aa14.07□□□□□ -0.16
CPSF1-212ENST00000616140 SLC15A5A6NIM6 579 aa14.07□□□□□ -0.16
CPSF1-212ENST00000616140 MAP3K13O43283 966 aa14.07□□□□□ -0.16
CPSF1-212ENST00000616140 SNAP91O60641 907 aa14.07□□□□□ -0.16
CPSF1-212ENST00000616140 PLIN3O60664 434 aa14.07□□□□□ -0.16
CPSF1-212ENST00000616140 HPCAL1P37235 193 aa14.07□□□□□ -0.16
CPSF1-212ENST00000616140 SMAD3P84022 425 aaKnown RBP14.07□□□□□ -0.16
CPSF1-212ENST00000616140 TGM3Q08188 693 aa14.07□□□□□ -0.16
CPSF1-212ENST00000616140 DUSP28Q4G0W2 176 aa14.07□□□□□ -0.16
CPSF1-212ENST00000616140 ATAD3BQ5T9A4 648 aa14.07□□□□□ -0.16
CPSF1-212ENST00000616140 DOK6Q6PKX4 331 aa14.07□□□□□ -0.16
CPSF1-212ENST00000616140 PYROXD2Q8N2H3 581 aa14.07□□□□□ -0.16
CPSF1-212ENST00000616140 WDR36Q8NI36 951 aaKnown RBP14.07□□□□□ -0.16
CPSF1-212ENST00000616140 ELMO1Q92556 727 aa14.07□□□□□ -0.16
CPSF1-212ENST00000616140 NXNL1Q96CM4 212 aa14.07□□□□□ -0.16
CPSF1-212ENST00000616140 LINGO1Q96FE5 620 aa14.07□□□□□ -0.16
CPSF1-212ENST00000616140 KCTD15Q96SI1 283 aaPredicted RBP14.07□□□□□ -0.16
CPSF1-212ENST00000616140 TSEN34Q9BSV6 310 aaKnown RBP14.07□□□□□ -0.16
CPSF1-212ENST00000616140 AK5Q9Y6K8 562 aa14.07□□□□□ -0.16
CPSF1-212ENST00000616140 FAM25AB3EWG3 89 aa14.07□□□□□ -0.16
CPSF1-212ENST00000616140 FAM25CB3EWG5 89 aa14.07□□□□□ -0.16
CPSF1-212ENST00000616140 FAM25GB3EWG6 89 aa14.07□□□□□ -0.16
CPSF1-212ENST00000616140 MDM4O15151 490 aa14.07□□□□□ -0.16
CPSF1-212ENST00000616140 AHCYL1O43865 530 aa14.07□□□□□ -0.16
CPSF1-212ENST00000616140 UQCRBP14927 111 aa14.07□□□□□ -0.16
CPSF1-212ENST00000616140 PAICSP22234 425 aaKnown RBP14.07□□□□□ -0.16
CPSF1-212ENST00000616140 NOS3P29474 1203 aa14.07□□□□□ -0.16
CPSF1-212ENST00000616140 GDF10P55107 478 aa14.07□□□□□ -0.16
CPSF1-212ENST00000616140 BROXQ5VW32 411 aa14.07□□□□□ -0.16
CPSF1-212ENST00000616140 TRMT10BQ6PF06 316 aaKnown RBP14.07□□□□□ -0.16
CPSF1-212ENST00000616140 RINLQ6ZS11 566 aa14.07□□□□□ -0.16
CPSF1-212ENST00000616140 USP50Q70EL3 339 aaPredicted RBP14.07□□□□□ -0.16
CPSF1-212ENST00000616140 TDRPQ86YL5 185 aa14.07□□□□□ -0.16
CPSF1-212ENST00000616140 LENG8Q96PV6 779 aaPredicted RBP14.07□□□□□ -0.16
CPSF1-212ENST00000616140 PNPLA3Q9NST1 481 aa14.07□□□□□ -0.16
CPSF1-212ENST00000616140 ZDHHC18Q9NUE0 388 aa14.07□□□□□ -0.16
CPSF1-212ENST00000616140 SATB2Q9UPW6 733 aa14.07□□□□□ -0.16
CPSF1-212ENST00000616140 TIPRLO75663 272 aa14.06□□□□□ -0.16
CPSF1-212ENST00000616140 OTCP00480 354 aa14.06□□□□□ -0.16
CPSF1-212ENST00000616140 IDO1P14902 403 aa14.06□□□□□ -0.16
CPSF1-212ENST00000616140 TCF3P15923 654 aa14.06□□□□□ -0.16
CPSF1-212ENST00000616140 CTPS1P17812 591 aa14.06□□□□□ -0.16
CPSF1-212ENST00000616140 AIF1P55008 147 aa14.06□□□□□ -0.16
CPSF1-212ENST00000616140 MAP2K5Q13163 448 aa14.06□□□□□ -0.16
CPSF1-212ENST00000616140 KHDC1Q4VXA5 237 aaKnown RBP14.06□□□□□ -0.16
CPSF1-212ENST00000616140 PDZK1Q5T2W1 519 aa14.06□□□□□ -0.16
CPSF1-212ENST00000616140 ZNF618Q5T7W0 954 aa14.06□□□□□ -0.16
CPSF1-212ENST00000616140 GPR180Q86V85 440 aa14.06□□□□□ -0.16
CPSF1-212ENST00000616140 EPHX4Q8IUS5 362 aa14.06□□□□□ -0.16
CPSF1-212ENST00000616140 PPTC7Q8NI37 304 aa14.06□□□□□ -0.16
CPSF1-212ENST00000616140 STARD8Q92502 1023 aa14.06□□□□□ -0.16
CPSF1-212ENST00000616140 CIB1Q99828 191 aa14.06□□□□□ -0.16
CPSF1-212ENST00000616140 S100A14Q9HCY8 104 aa14.06□□□□□ -0.16
CPSF1-212ENST00000616140 TMEM216Q9P0N5 145 aa14.06□□□□□ -0.16
CPSF1-212ENST00000616140 AGO1Q9UL18 857 aaKnown RBP14.06□□□□□ -0.16
CPSF1-212ENST00000616140 SLIT3O75094 1523 aa14.06□□□□□ -0.16
CPSF1-212ENST00000616140 M0R2N6 131 aa14.06□□□□□ -0.16
CPSF1-212ENST00000616140 MYL12AP19105 171 aa14.06□□□□□ -0.16
CPSF1-212ENST00000616140 PTPN3P26045 913 aa14.06□□□□□ -0.16
CPSF1-212ENST00000616140 FOXN2P32314 431 aa14.06□□□□□ -0.16
CPSF1-212ENST00000616140 PRKCQQ04759 706 aa14.06□□□□□ -0.16
CPSF1-212ENST00000616140 RALGDSQ12967 914 aa14.06□□□□□ -0.16
CPSF1-212ENST00000616140 GRM3Q14832 879 aa14.06□□□□□ -0.16
CPSF1-212ENST00000616140 CYP1B1Q16678 543 aa14.06□□□□□ -0.16
CPSF1-212ENST00000616140 METTL21CQ5VZV1 264 aa14.06□□□□□ -0.16
CPSF1-212ENST00000616140 TMC5Q6UXY8 1006 aa14.06□□□□□ -0.16
CPSF1-212ENST00000616140 CYP4Z2PQ8N1L4 340 aa14.06□□□□□ -0.16
CPSF1-212ENST00000616140 CENPIQ92674 756 aaPredicted RBP14.06□□□□□ -0.16
CPSF1-212ENST00000616140 REPS1Q96D71 796 aa14.06□□□□□ -0.16
CPSF1-212ENST00000616140 ABCG8Q9H221 673 aa14.06□□□□□ -0.16
CPSF1-212ENST00000616140 GNPTGQ9UJJ9 305 aa14.06□□□□□ -0.16
CPSF1-212ENST00000616140 MAFBQ9Y5Q3 323 aaPredicted RBP14.06□□□□□ -0.16
CPSF1-212ENST00000616140 A0A0J9YYE9 177 aa14.06□□□□□ -0.16
CPSF1-212ENST00000616140 C2CD4BA6NLJ0 364 aa14.06□□□□□ -0.16
CPSF1-212ENST00000616140 IPO13O94829 963 aaKnown RBP14.06□□□□□ -0.16
CPSF1-212ENST00000616140 TMEM63AO94886 807 aa14.06□□□□□ -0.16
CPSF1-212ENST00000616140 CYP2A6P11509 494 aaPredicted RBP14.06□□□□□ -0.16
CPSF1-212ENST00000616140 GRK4P32298 578 aa14.06□□□□□ -0.16
CPSF1-212ENST00000616140 PRKAG1P54619 331 aa14.06□□□□□ -0.16
CPSF1-212ENST00000616140 WDR4P57081 412 aaKnown RBP14.06□□□□□ -0.16
CPSF1-212ENST00000616140 INTS11Q5TA45 600 aaKnown RBP14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms