RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 RRN3Q9NYV6 651 aa8.74□□□□□ -1.01
SHKBP1-220ENST00000599716 FOXJ2Q9P0K8 574 aa8.74□□□□□ -1.01
SHKBP1-220ENST00000599716 GPR34Q9UPC5 381 aa8.74□□□□□ -1.01
SHKBP1-220ENST00000599716 DOLKQ9UPQ8 538 aa8.74□□□□□ -1.01
SHKBP1-220ENST00000599716 ZFC3H1O60293 1989 aaKnown RBP8.73□□□□□ -1.01
SHKBP1-220ENST00000599716 ARHGEF17Q96PE2 2063 aaPredicted RBP8.73□□□□□ -1.01
SHKBP1-220ENST00000599716 A8MX80 341 aa8.73□□□□□ -1.01
SHKBP1-220ENST00000599716 D6RAR5 112 aa8.73□□□□□ -1.01
SHKBP1-220ENST00000599716 RAMP2O60895 175 aa8.73□□□□□ -1.01
SHKBP1-220ENST00000599716 TCEA3O75764 348 aa8.73□□□□□ -1.01
SHKBP1-220ENST00000599716 GFPT2O94808 682 aa8.73□□□□□ -1.01
SHKBP1-220ENST00000599716 FGFR1OPO95684 399 aaKnown RBP8.73□□□□□ -1.01
SHKBP1-220ENST00000599716 POP4O95707 220 aaKnown RBP8.73□□□□□ -1.01
SHKBP1-220ENST00000599716 GSRP00390 522 aa8.73□□□□□ -1.01
SHKBP1-220ENST00000599716 ITGA2BP08514 1039 aa8.73□□□□□ -1.01
SHKBP1-220ENST00000599716 CTSEP14091 401 aa8.73□□□□□ -1.01
SHKBP1-220ENST00000599716 RHOQP17081 205 aa8.73□□□□□ -1.01
SHKBP1-220ENST00000599716 CHRNB2P17787 502 aa8.73□□□□□ -1.01
SHKBP1-220ENST00000599716 ADRA1BP35368 520 aa8.73□□□□□ -1.01
SHKBP1-220ENST00000599716 RGRP47804 291 aa8.73□□□□□ -1.01
SHKBP1-220ENST00000599716 RPIAP49247 311 aa8.73□□□□□ -1.01
SHKBP1-220ENST00000599716 HK3P52790 923 aa8.73□□□□□ -1.01
SHKBP1-220ENST00000599716 MAPK10P53779 464 aa8.73□□□□□ -1.01
SHKBP1-220ENST00000599716 INHBCP55103 352 aa8.73□□□□□ -1.01
SHKBP1-220ENST00000599716 HDAC4P56524 1084 aa8.73□□□□□ -1.01
SHKBP1-220ENST00000599716 RHOAP61586 193 aa8.73□□□□□ -1.01
SHKBP1-220ENST00000599716 SNRPD1P62314 119 aaKnown RBP8.73□□□□□ -1.01
SHKBP1-220ENST00000599716 INPP5AQ14642 412 aa8.73□□□□□ -1.01
SHKBP1-220ENST00000599716 POLD3Q15054 466 aaPredicted RBP8.73□□□□□ -1.01
SHKBP1-220ENST00000599716 MAN2A1Q16706 1144 aa8.73□□□□□ -1.01
SHKBP1-220ENST00000599716 TPD52L1Q16890 204 aaPredicted RBP8.73□□□□□ -1.01
SHKBP1-220ENST00000599716 KLHDC7AQ5VTJ3 777 aa8.73□□□□□ -1.01
SHKBP1-220ENST00000599716 ESRP1Q6NXG1 681 aaKnown RBP8.73□□□□□ -1.01
SHKBP1-220ENST00000599716 ZNF783Q6ZMS7 281 aa8.73□□□□□ -1.01
SHKBP1-220ENST00000599716 USP53Q70EK8 1073 aa8.73□□□□□ -1.01
SHKBP1-220ENST00000599716 PELI3Q8N2H9 469 aa8.73□□□□□ -1.01
SHKBP1-220ENST00000599716 FAM26EQ8N5C1 309 aa8.73□□□□□ -1.01
SHKBP1-220ENST00000599716 ARL10Q8N8L6 244 aa8.73□□□□□ -1.01
SHKBP1-220ENST00000599716 DENND6BQ8NEG7 585 aa8.73□□□□□ -1.01
SHKBP1-220ENST00000599716 CCL4L1Q8NHW4 92 aa8.73□□□□□ -1.01
SHKBP1-220ENST00000599716 FAM174AQ8TBP5 190 aa8.73□□□□□ -1.01
SHKBP1-220ENST00000599716 EPS8L1Q8TE68 723 aa8.73□□□□□ -1.01
SHKBP1-220ENST00000599716 BTN2A2Q8WVV5 523 aa8.73□□□□□ -1.01
SHKBP1-220ENST00000599716 HTR3CQ8WXA8 447 aa8.73□□□□□ -1.01
SHKBP1-220ENST00000599716 GLMNQ92990 594 aa8.73□□□□□ -1.01
SHKBP1-220ENST00000599716 NAT6Q93015 286 aa8.73□□□□□ -1.01
SHKBP1-220ENST00000599716 PMEPA1Q969W9 287 aa8.73□□□□□ -1.01
SHKBP1-220ENST00000599716 RAB7BQ96AH8 199 aa8.73□□□□□ -1.01
SHKBP1-220ENST00000599716 HMCESQ96FZ2 354 aa8.73□□□□□ -1.01
SHKBP1-220ENST00000599716 FAM81BQ96LP2 452 aa8.73□□□□□ -1.01
SHKBP1-220ENST00000599716 GFM1Q96RP9 751 aaKnown RBP8.73□□□□□ -1.01
SHKBP1-220ENST00000599716 EDEM3Q9BZQ6 932 aa8.73□□□□□ -1.01
SHKBP1-220ENST00000599716 NDST4Q9H3R1 872 aa8.73□□□□□ -1.01
SHKBP1-220ENST00000599716 STARD5Q9NSY2 213 aa8.73□□□□□ -1.01
SHKBP1-220ENST00000599716 TMEM248Q9NWD8 314 aa8.73□□□□□ -1.01
SHKBP1-220ENST00000599716 KIAA1468Q9P260 1216 aa8.73□□□□□ -1.01
SHKBP1-220ENST00000599716 PPARGC1AQ9UBK2 798 aaKnown RBP8.73□□□□□ -1.01
SHKBP1-220ENST00000599716 LHX3Q9UBR4 397 aa8.73□□□□□ -1.01
SHKBP1-220ENST00000599716 LOXL2Q9Y4K0 774 aa8.73□□□□□ -1.01
SHKBP1-220ENST00000599716 PRAMEF33A0A0G2JMD5 474 aa8.72□□□□□ -1.01
SHKBP1-220ENST00000599716 TTC24A2A3L6 582 aaPredicted RBP8.72□□□□□ -1.01
SHKBP1-220ENST00000599716 GTPBP10A4D1E9 387 aaKnown RBP8.72□□□□□ -1.01
SHKBP1-220ENST00000599716 TMEM202A6NGA9 273 aa8.72□□□□□ -1.01
SHKBP1-220ENST00000599716 C2CD4BA6NLJ0 364 aa8.72□□□□□ -1.01
SHKBP1-220ENST00000599716 B4DGG1 531 aa8.72□□□□□ -1.01
SHKBP1-220ENST00000599716 EPHB6O15197 1021 aa8.72□□□□□ -1.01
SHKBP1-220ENST00000599716 KDELR3O43731 214 aa8.72□□□□□ -1.01
SHKBP1-220ENST00000599716 BUB1BO60566 1050 aaPredicted RBP8.72□□□□□ -1.01
SHKBP1-220ENST00000599716 PRAMEF10O60809 474 aa8.72□□□□□ -1.01
SHKBP1-220ENST00000599716 RASGRP1O95267 797 aa8.72□□□□□ -1.01
SHKBP1-220ENST00000599716 PLEKP08567 350 aaPredicted RBP8.72□□□□□ -1.01
SHKBP1-220ENST00000599716 ETFBP38117 255 aa8.72□□□□□ -1.01
SHKBP1-220ENST00000599716 SNX16P57768 344 aa8.72□□□□□ -1.01
SHKBP1-220ENST00000599716 TLE1Q04724 770 aa8.72□□□□□ -1.01
SHKBP1-220ENST00000599716 PTK2BQ14289 1009 aa8.72□□□□□ -1.01
SHKBP1-220ENST00000599716 LRRC14Q15048 493 aa8.72□□□□□ -1.01
SHKBP1-220ENST00000599716 CYTH1Q15438 398 aa8.72□□□□□ -1.01
SHKBP1-220ENST00000599716 DPCR1Q3MIW9 517 aa8.72□□□□□ -1.01
SHKBP1-220ENST00000599716 VWA3BQ502W6 1294 aa8.72□□□□□ -1.01
SHKBP1-220ENST00000599716 TPCN2Q8NHX9 752 aa8.72□□□□□ -1.01
SHKBP1-220ENST00000599716 FAM172AQ8WUF8 416 aa8.72□□□□□ -1.01
SHKBP1-220ENST00000599716 ASB12Q8WXK4 309 aa8.72□□□□□ -1.01
SHKBP1-220ENST00000599716 OR1E3Q8WZA6 343 aa8.72□□□□□ -1.01
SHKBP1-220ENST00000599716 ISG20Q96AZ6 181 aaKnown RBP8.72□□□□□ -1.01
SHKBP1-220ENST00000599716 TBC1D31Q96DN5 1066 aa8.72□□□□□ -1.01
SHKBP1-220ENST00000599716 RNF31Q96EP0 1072 aa8.72□□□□□ -1.01
SHKBP1-220ENST00000599716 CELF6Q96J87 481 aaKnown RBP8.72□□□□□ -1.01
SHKBP1-220ENST00000599716 NSMCE3Q96MG7 304 aa8.72□□□□□ -1.01
SHKBP1-220ENST00000599716 GDAP1L1Q96MZ0 367 aa8.72□□□□□ -1.01
SHKBP1-220ENST00000599716 APOOQ9BUR5 198 aa8.72□□□□□ -1.01
SHKBP1-220ENST00000599716 NAA15Q9BXJ9 866 aaKnown RBP8.72□□□□□ -1.01
SHKBP1-220ENST00000599716 TTYH3Q9C0H2 523 aa8.72□□□□□ -1.01
SHKBP1-220ENST00000599716 SEMA6CQ9H3T2 930 aa8.72□□□□□ -1.01
SHKBP1-220ENST00000599716 LRRN3Q9H3W5 708 aa8.72□□□□□ -1.01
SHKBP1-220ENST00000599716 RDH14Q9HBH5 336 aa8.72□□□□□ -1.01
SHKBP1-220ENST00000599716 FGF22Q9HCT0 170 aa8.72□□□□□ -1.01
SHKBP1-220ENST00000599716 PCDH12Q9NPG4 1184 aa8.72□□□□□ -1.01
SHKBP1-220ENST00000599716 SAMSN1Q9NSI8 373 aaKnown RBP8.72□□□□□ -1.01
SHKBP1-220ENST00000599716 GPATCH2LQ9NWQ4 482 aa8.72□□□□□ -1.01
SHKBP1-220ENST00000599716 TAB2Q9NYJ8 693 aa8.72□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms