RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 GLOD4Q9HC38 313 aa14.31□□□□□ -0.12
SHKBP1-217ENST00000598558 SLC6A14Q9UN76 642 aa14.31□□□□□ -0.12
SHKBP1-217ENST00000598558 CHKBQ9Y259 395 aa14.31□□□□□ -0.12
SHKBP1-217ENST00000598558 COQ6Q9Y2Z9 468 aa14.31□□□□□ -0.12
SHKBP1-217ENST00000598558 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP14.31□□□□□ -0.12
SHKBP1-217ENST00000598558 TNRC6BQ9UPQ9 1833 aaKnown RBP14.31□□□□□ -0.12
SHKBP1-217ENST00000598558 RIF1Q5UIP0 2472 aaKnown RBP14.3□□□□□ -0.12
SHKBP1-217ENST00000598558 F5H423 210 aaPredicted RBP14.3□□□□□ -0.12
SHKBP1-217ENST00000598558 H0Y8X5 98 aa14.3□□□□□ -0.12
SHKBP1-217ENST00000598558 ZSCAN12O43309 604 aa14.3□□□□□ -0.12
SHKBP1-217ENST00000598558 TSPAN6O43657 245 aa14.3□□□□□ -0.12
SHKBP1-217ENST00000598558 SOCS5O75159 536 aa14.3□□□□□ -0.12
SHKBP1-217ENST00000598558 MT-CYBP00156 380 aaPredicted RBP14.3□□□□□ -0.12
SHKBP1-217ENST00000598558 CTPS1P17812 591 aa14.3□□□□□ -0.12
SHKBP1-217ENST00000598558 ENGP17813 658 aa14.3□□□□□ -0.12
SHKBP1-217ENST00000598558 MMP12P39900 470 aa14.3□□□□□ -0.12
SHKBP1-217ENST00000598558 CETN2P41208 172 aa14.3□□□□□ -0.12
SHKBP1-217ENST00000598558 CLDN2P57739 230 aa14.3□□□□□ -0.12
SHKBP1-217ENST00000598558 ZNF569Q5MCW4 686 aa14.3□□□□□ -0.12
SHKBP1-217ENST00000598558 C17orf53Q8N3J3 647 aaPredicted RBP14.3□□□□□ -0.12
SHKBP1-217ENST00000598558 TMEM145Q8NBT3 493 aa14.3□□□□□ -0.12
SHKBP1-217ENST00000598558 SLC35B2Q8TB61 432 aa14.3□□□□□ -0.12
SHKBP1-217ENST00000598558 HTR3CQ8WXA8 447 aa14.3□□□□□ -0.12
SHKBP1-217ENST00000598558 ATG4AQ8WYN0 398 aa14.3□□□□□ -0.12
SHKBP1-217ENST00000598558 SERAC1Q96JX3 654 aa14.3□□□□□ -0.12
SHKBP1-217ENST00000598558 BMFQ96LC9 184 aa14.3□□□□□ -0.12
SHKBP1-217ENST00000598558 ALS2CR12Q96Q35 445 aa14.3□□□□□ -0.12
SHKBP1-217ENST00000598558 SLC17A9Q9BYT1 436 aa14.3□□□□□ -0.12
SHKBP1-217ENST00000598558 SLC25A51Q9H1U9 297 aa14.3□□□□□ -0.12
SHKBP1-217ENST00000598558 UBP1Q9NZI7 540 aa14.3□□□□□ -0.12
SHKBP1-217ENST00000598558 B4GALT6Q9UBX8 382 aa14.3□□□□□ -0.12
SHKBP1-217ENST00000598558 GVINP1Q7Z2Y8 2422 aa14.29□□□□□ -0.12
SHKBP1-217ENST00000598558 GOLGA8CPA6NN73 597 aa14.29□□□□□ -0.12
SHKBP1-217ENST00000598558 NEMP1O14524 444 aa14.29□□□□□ -0.12
SHKBP1-217ENST00000598558 CPP00450 1065 aa14.29□□□□□ -0.12
SHKBP1-217ENST00000598558 ATP1A1P05023 1023 aaKnown RBP14.29□□□□□ -0.12
SHKBP1-217ENST00000598558 ALPIP09923 528 aa14.29□□□□□ -0.12
SHKBP1-217ENST00000598558 NFKB1P19838 968 aa14.29□□□□□ -0.12
SHKBP1-217ENST00000598558 LIG3P49916 1009 aa14.29□□□□□ -0.12
SHKBP1-217ENST00000598558 RPS21P63220 83 aaKnown RBP14.29□□□□□ -0.12
SHKBP1-217ENST00000598558 RACK1P63244 317 aaKnown RBP14.29□□□□□ -0.12
SHKBP1-217ENST00000598558 FAM193AP78312 1265 aa14.29□□□□□ -0.12
SHKBP1-217ENST00000598558 KCTD19Q17RG1 926 aaPredicted RBP14.29□□□□□ -0.12
SHKBP1-217ENST00000598558 KIF19Q2TAC6 998 aa14.29□□□□□ -0.12
SHKBP1-217ENST00000598558 PRAMEF14Q5SWL7 426 aa14.29□□□□□ -0.12
SHKBP1-217ENST00000598558 ARMC12Q5T9G4 340 aa14.29□□□□□ -0.12
SHKBP1-217ENST00000598558 DARS2Q6PI48 645 aaKnown RBP14.29□□□□□ -0.12
SHKBP1-217ENST00000598558 LIPIQ6XZB0 460 aa14.29□□□□□ -0.12
SHKBP1-217ENST00000598558 KDELC2Q7Z4H8 507 aa14.29□□□□□ -0.12
SHKBP1-217ENST00000598558 TSPAN33Q86UF1 283 aa14.29□□□□□ -0.12
SHKBP1-217ENST00000598558 CBARPQ8N350 705 aaPredicted RBP14.29□□□□□ -0.12
SHKBP1-217ENST00000598558 CEP76Q8TAP6 659 aa14.29□□□□□ -0.12
SHKBP1-217ENST00000598558 C1orf54Q8WWF1 131 aa14.29□□□□□ -0.12
SHKBP1-217ENST00000598558 OXNAD1Q96HP4 312 aaPredicted RBP14.29□□□□□ -0.12
SHKBP1-217ENST00000598558 TRIB3Q96RU7 358 aa14.29□□□□□ -0.12
SHKBP1-217ENST00000598558 TDRD1Q9BXT4 1180 aaKnown RBP14.29□□□□□ -0.12
SHKBP1-217ENST00000598558 CARD9Q9H257 536 aa14.29□□□□□ -0.12
SHKBP1-217ENST00000598558 IL21RQ9HBE5 538 aa14.29□□□□□ -0.12
SHKBP1-217ENST00000598558 MBNL1Q9NR56 388 aaKnown RBP14.29□□□□□ -0.12
SHKBP1-217ENST00000598558 DNPEPQ9ULA0 475 aa14.29□□□□□ -0.12
SHKBP1-217ENST00000598558 PPIL1Q9Y3C6 166 aa14.29□□□□□ -0.12
SHKBP1-217ENST00000598558 ZNF292O60281 2723 aa14.29□□□□□ -0.12
SHKBP1-217ENST00000598558 GON4LQ3T8J9 2241 aa14.29□□□□□ -0.12
SHKBP1-217ENST00000598558 POM121BA6NF01 834 aa14.28□□□□□ -0.12
SHKBP1-217ENST00000598558 NPIPB15A6NHN6 443 aaPredicted RBP14.28□□□□□ -0.12
SHKBP1-217ENST00000598558 ARHGAP33O14559 1287 aa14.28□□□□□ -0.12
SHKBP1-217ENST00000598558 FANCGO15287 622 aa14.28□□□□□ -0.12
SHKBP1-217ENST00000598558 NEBLO76041 1014 aa14.28□□□□□ -0.12
SHKBP1-217ENST00000598558 GNSP15586 552 aa14.28□□□□□ -0.12
SHKBP1-217ENST00000598558 LHCGRP22888 699 aa14.28□□□□□ -0.12
SHKBP1-217ENST00000598558 XPAP23025 273 aaPredicted RBP14.28□□□□□ -0.12
SHKBP1-217ENST00000598558 CES1P23141 567 aa14.28□□□□□ -0.12
SHKBP1-217ENST00000598558 HNF1BP35680 557 aa14.28□□□□□ -0.12
SHKBP1-217ENST00000598558 DPP6P42658 865 aa14.28□□□□□ -0.12
SHKBP1-217ENST00000598558 SUOXP51687 545 aa14.28□□□□□ -0.12
SHKBP1-217ENST00000598558 GDF10P55107 478 aa14.28□□□□□ -0.12
SHKBP1-217ENST00000598558 GRIK2Q13002 908 aa14.28□□□□□ -0.12
SHKBP1-217ENST00000598558 CFAP58Q5T655 872 aa14.28□□□□□ -0.12
SHKBP1-217ENST00000598558 NAPEPLDQ6IQ20 393 aa14.28□□□□□ -0.12
SHKBP1-217ENST00000598558 KIAA1161Q6NSJ0 714 aa14.28□□□□□ -0.12
SHKBP1-217ENST00000598558 KDELC1Q6UW63 502 aa14.28□□□□□ -0.12
SHKBP1-217ENST00000598558 GCNT7Q6ZNI0 430 aa14.28□□□□□ -0.12
SHKBP1-217ENST00000598558 RFLNAQ6ZTI6 216 aa14.28□□□□□ -0.12
SHKBP1-217ENST00000598558 DPPA4Q7L190 304 aa14.28□□□□□ -0.12
SHKBP1-217ENST00000598558 PID1Q7Z2X4 250 aa14.28□□□□□ -0.12
SHKBP1-217ENST00000598558 SPATS2Q86XZ4 545 aaKnown RBP14.28□□□□□ -0.12
SHKBP1-217ENST00000598558 PELI3Q8N2H9 469 aa14.28□□□□□ -0.12
SHKBP1-217ENST00000598558 GPR161Q8N6U8 529 aaKnown RBP14.28□□□□□ -0.12
SHKBP1-217ENST00000598558 UBE2Q2Q8WVN8 375 aa14.28□□□□□ -0.12
SHKBP1-217ENST00000598558 FUBP1Q96AE4 644 aaKnown RBP14.28□□□□□ -0.12
SHKBP1-217ENST00000598558 CENPTQ96BT3 561 aa14.28□□□□□ -0.12
SHKBP1-217ENST00000598558 MCCC1Q96RQ3 725 aaPredicted RBP14.28□□□□□ -0.12
SHKBP1-217ENST00000598558 NUSAP1Q9BXS6 441 aaKnown RBP14.28□□□□□ -0.12
SHKBP1-217ENST00000598558 AASDHPPTQ9NRN7 309 aa14.28□□□□□ -0.12
SHKBP1-217ENST00000598558 SUSD2Q9UGT4 822 aa14.28□□□□□ -0.12
SHKBP1-217ENST00000598558 PHTF1Q9UMS5 762 aa14.28□□□□□ -0.12
SHKBP1-217ENST00000598558 ANKRD6Q9Y2G4 727 aa14.28□□□□□ -0.12
SHKBP1-217ENST00000598558 SNX11Q9Y5W9 270 aa14.28□□□□□ -0.12
SHKBP1-217ENST00000598558 PIEZO1Q92508 2521 aa14.28□□□□□ -0.12
SHKBP1-217ENST00000598558 LOC105378220A0A1B0GUY1 285 aaPredicted RBP14.27□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms