RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 PPP1R15BQ5SWA1 713 aa12.64□□□□□ -0.39
TRIM28-212ENST00000597995 KIAA1614Q5VZ46 1190 aa12.64□□□□□ -0.39
TRIM28-212ENST00000597995 WDR59Q6PJI9 974 aa12.64□□□□□ -0.39
TRIM28-212ENST00000597995 DNAAF5Q86Y56 855 aa12.64□□□□□ -0.39
TRIM28-212ENST00000597995 CCDC185Q8N715 623 aa12.64□□□□□ -0.39
TRIM28-212ENST00000597995 OR6C4Q8NGE1 309 aa12.64□□□□□ -0.39
TRIM28-212ENST00000597995 ATL2Q8NHH9 583 aa12.64□□□□□ -0.39
TRIM28-212ENST00000597995 NTAN1Q96AB6 310 aa12.64□□□□□ -0.39
TRIM28-212ENST00000597995 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP12.64□□□□□ -0.39
TRIM28-212ENST00000597995 EDEM3Q9BZQ6 932 aa12.64□□□□□ -0.39
TRIM28-212ENST00000597995 STRADBQ9C0K7 418 aa12.64□□□□□ -0.39
TRIM28-212ENST00000597995 GULP1Q9UBP9 304 aa12.64□□□□□ -0.39
TRIM28-212ENST00000597995 ACSL6Q9UKU0 697 aa12.64□□□□□ -0.39
TRIM28-212ENST00000597995 AHCTF1Q8WYP5 2266 aa12.63□□□□□ -0.39
TRIM28-212ENST00000597995 PIEZO2Q9H5I5 2752 aa12.63□□□□□ -0.39
TRIM28-212ENST00000597995 A0A1B0GTH6 734 aa12.63□□□□□ -0.39
TRIM28-212ENST00000597995 SYCE3A1L190 88 aa12.63□□□□□ -0.39
TRIM28-212ENST00000597995 LRRC53A6NM62 1247 aa12.63□□□□□ -0.39
TRIM28-212ENST00000597995 SMTNL1A8MU46 457 aa12.63□□□□□ -0.39
TRIM28-212ENST00000597995 CASC3O15234 703 aaKnown RBP12.63□□□□□ -0.39
TRIM28-212ENST00000597995 RASGRP1O95267 797 aa12.63□□□□□ -0.39
TRIM28-212ENST00000597995 CALB1P05937 261 aa12.63□□□□□ -0.39
TRIM28-212ENST00000597995 CTSEP14091 401 aa12.63□□□□□ -0.39
TRIM28-212ENST00000597995 FERP16591 822 aa12.63□□□□□ -0.39
TRIM28-212ENST00000597995 HTR1BP28222 390 aa12.63□□□□□ -0.39
TRIM28-212ENST00000597995 CCKBRP32239 447 aa12.63□□□□□ -0.39
TRIM28-212ENST00000597995 RPL7AP62424 266 aaKnown RBP12.63□□□□□ -0.39
TRIM28-212ENST00000597995 NFATC4Q14934 902 aa12.63□□□□□ -0.39
TRIM28-212ENST00000597995 NR1I3Q14994 352 aa12.63□□□□□ -0.39
TRIM28-212ENST00000597995 AGERQ15109 404 aa12.63□□□□□ -0.39
TRIM28-212ENST00000597995 IRF4Q15306 451 aa12.63□□□□□ -0.39
TRIM28-212ENST00000597995 ALG11Q2TAA5 492 aa12.63□□□□□ -0.39
TRIM28-212ENST00000597995 ZSCAN23Q3MJ62 389 aa12.63□□□□□ -0.39
TRIM28-212ENST00000597995 LRRC73Q5JTD7 316 aa12.63□□□□□ -0.39
TRIM28-212ENST00000597995 ACAD10Q6JQN1 1059 aa12.63□□□□□ -0.39
TRIM28-212ENST00000597995 LEKR1Q6ZMV7 388 aa12.63□□□□□ -0.39
TRIM28-212ENST00000597995 RAB11FIP2Q7L804 512 aa12.63□□□□□ -0.39
TRIM28-212ENST00000597995 GKN2Q86XP6 184 aa12.63□□□□□ -0.39
TRIM28-212ENST00000597995 HID1Q8IV36 788 aa12.63□□□□□ -0.39
TRIM28-212ENST00000597995 MCOLN2Q8IZK6 566 aa12.63□□□□□ -0.39
TRIM28-212ENST00000597995 FBXO39Q8N4B4 442 aa12.63□□□□□ -0.39
TRIM28-212ENST00000597995 RTL3Q8N8U3 475 aaKnown RBP12.63□□□□□ -0.39
TRIM28-212ENST00000597995 C3orf20Q8ND61 904 aa12.63□□□□□ -0.39
TRIM28-212ENST00000597995 FAM172AQ8WUF8 416 aa12.63□□□□□ -0.39
TRIM28-212ENST00000597995 TMEM74Q96NL1 305 aa12.63□□□□□ -0.39
TRIM28-212ENST00000597995 GFM1Q96RP9 751 aaKnown RBP12.63□□□□□ -0.39
TRIM28-212ENST00000597995 WRAP53Q9BUR4 548 aaKnown RBP12.63□□□□□ -0.39
TRIM28-212ENST00000597995 CLMPQ9H6B4 373 aa12.63□□□□□ -0.39
TRIM28-212ENST00000597995 NOL6Q9H6R4 1146 aaKnown RBP12.63□□□□□ -0.39
TRIM28-212ENST00000597995 SYNDIG1Q9H7V2 258 aa12.63□□□□□ -0.39
TRIM28-212ENST00000597995 MYO18BQ8IUG5 2567 aa12.62□□□□□ -0.39
TRIM28-212ENST00000597995 TSPAN11A1L157 253 aa12.62□□□□□ -0.39
TRIM28-212ENST00000597995 D6RAR5 112 aa12.62□□□□□ -0.39
TRIM28-212ENST00000597995 EFSO43281 561 aa12.62□□□□□ -0.39
TRIM28-212ENST00000597995 CCP110O43303 1012 aa12.62□□□□□ -0.39
TRIM28-212ENST00000597995 CELA2BP08218 269 aaPredicted RBP12.62□□□□□ -0.39
TRIM28-212ENST00000597995 ITIH2P19823 946 aa12.62□□□□□ -0.39
TRIM28-212ENST00000597995 GPD1P21695 349 aa12.62□□□□□ -0.39
TRIM28-212ENST00000597995 XPAP23025 273 aaPredicted RBP12.62□□□□□ -0.39
TRIM28-212ENST00000597995 SLC5A2P31639 672 aa12.62□□□□□ -0.39
TRIM28-212ENST00000597995 UGT1A5P35504 534 aa12.62□□□□□ -0.39
TRIM28-212ENST00000597995 INHBCP55103 352 aa12.62□□□□□ -0.39
TRIM28-212ENST00000597995 SRP54P61011 504 aaKnown RBP12.62□□□□□ -0.39
TRIM28-212ENST00000597995 RHOAP61586 193 aa12.62□□□□□ -0.39
TRIM28-212ENST00000597995 CCL7P80098 99 aa12.62□□□□□ -0.39
TRIM28-212ENST00000597995 OGDHQ02218 1023 aa12.62□□□□□ -0.39
TRIM28-212ENST00000597995 KCNC4Q03721 635 aa12.62□□□□□ -0.39
TRIM28-212ENST00000597995 GRM3Q14832 879 aa12.62□□□□□ -0.39
TRIM28-212ENST00000597995 WSCD2Q2TBF2 565 aa12.62□□□□□ -0.39
TRIM28-212ENST00000597995 SLFN11Q7Z7L1 901 aa12.62□□□□□ -0.39
TRIM28-212ENST00000597995 B3GNT8Q7Z7M8 397 aa12.62□□□□□ -0.39
TRIM28-212ENST00000597995 ZNF354CQ86Y25 554 aa12.62□□□□□ -0.39
TRIM28-212ENST00000597995 PYROXD2Q8N2H3 581 aa12.62□□□□□ -0.39
TRIM28-212ENST00000597995 KYQ8NBH2 561 aa12.62□□□□□ -0.39
TRIM28-212ENST00000597995 PCDH19Q8TAB3 1148 aa12.62□□□□□ -0.39
TRIM28-212ENST00000597995 TSACCQ96A04 125 aaPredicted RBP12.62□□□□□ -0.39
TRIM28-212ENST00000597995 CCDC74AQ96AQ1 378 aa12.62□□□□□ -0.39
TRIM28-212ENST00000597995 APOOQ9BUR5 198 aa12.62□□□□□ -0.39
TRIM28-212ENST00000597995 SELENOOQ9BVL4 669 aa12.62□□□□□ -0.39
TRIM28-212ENST00000597995 LRRN3Q9H3W5 708 aa12.62□□□□□ -0.39
TRIM28-212ENST00000597995 CBX8Q9HC52 389 aa12.62□□□□□ -0.39
TRIM28-212ENST00000597995 SEPT11Q9NVA2 429 aaKnown RBP12.62□□□□□ -0.39
TRIM28-212ENST00000597995 RABGEF1Q9UJ41 708 aa12.62□□□□□ -0.39
TRIM28-212ENST00000597995 MYO6Q9UM54 1294 aa12.62□□□□□ -0.39
TRIM28-212ENST00000597995 GPR34Q9UPC5 381 aa12.62□□□□□ -0.39
TRIM28-212ENST00000597995 UNC13CQ8NB66 2214 aa12.61□□□□□ -0.39
TRIM28-212ENST00000597995 A0A1W2PQC6 194 aa12.61□□□□□ -0.39
TRIM28-212ENST00000597995 A0A1W2PQM1 296 aa12.61□□□□□ -0.39
TRIM28-212ENST00000597995 CFAP69A5D8W1 941 aa12.61□□□□□ -0.39
TRIM28-212ENST00000597995 WASH4PA8MWX3 477 aa12.61□□□□□ -0.39
TRIM28-212ENST00000597995 NVLO15381 856 aaKnown RBP12.61□□□□□ -0.39
TRIM28-212ENST00000597995 TNFP01375 233 aa12.61□□□□□ -0.39
TRIM28-212ENST00000597995 EPHB2P29323 1055 aa12.61□□□□□ -0.39
TRIM28-212ENST00000597995 SERINC3Q13530 473 aa12.61□□□□□ -0.39
TRIM28-212ENST00000597995 INPP5AQ14642 412 aa12.61□□□□□ -0.39
TRIM28-212ENST00000597995 UGP2Q16851 508 aa12.61□□□□□ -0.39
TRIM28-212ENST00000597995 PARP15Q460N3 678 aa12.61□□□□□ -0.39
TRIM28-212ENST00000597995 ENPP7Q6UWV6 458 aa12.61□□□□□ -0.39
TRIM28-212ENST00000597995 ZNF571Q7Z3V5 609 aaPredicted RBP12.61□□□□□ -0.39
TRIM28-212ENST00000597995 LUZP1Q86V48 1076 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms