RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 ZNF599Q96NL3 588 aa13.73□□□□□ -0.21
TRIM28-211ENST00000597968 SYT11Q9BT88 431 aa13.73□□□□□ -0.21
TRIM28-211ENST00000597968 MAGEB5Q9BZ81 275 aa13.73□□□□□ -0.21
TRIM28-211ENST00000597968 EDEM3Q9BZQ6 932 aa13.73□□□□□ -0.21
TRIM28-211ENST00000597968 PADI4Q9UM07 663 aa13.73□□□□□ -0.21
TRIM28-211ENST00000597968 AP4E1Q9UPM8 1137 aa13.73□□□□□ -0.21
TRIM28-211ENST00000597968 DOLKQ9UPQ8 538 aa13.73□□□□□ -0.21
TRIM28-211ENST00000597968 ATP8A1Q9Y2Q0 1164 aa13.73□□□□□ -0.21
TRIM28-211ENST00000597968 ENTPD2Q9Y5L3 495 aa13.73□□□□□ -0.21
TRIM28-211ENST00000597968 FASNP49327 2511 aaKnown RBP13.72□□□□□ -0.21
TRIM28-211ENST00000597968 CDRT15L2A8MXV6 281 aa13.72□□□□□ -0.21
TRIM28-211ENST00000597968 NTN3O00634 580 aaPredicted RBP13.72□□□□□ -0.21
TRIM28-211ENST00000597968 TNFRSF10CO14798 259 aa13.72□□□□□ -0.21
TRIM28-211ENST00000597968 PALMO75781 387 aa13.72□□□□□ -0.21
TRIM28-211ENST00000597968 RNF8O76064 485 aa13.72□□□□□ -0.21
TRIM28-211ENST00000597968 C6P13671 934 aa13.72□□□□□ -0.21
TRIM28-211ENST00000597968 PNLIPP16233 465 aa13.72□□□□□ -0.21
TRIM28-211ENST00000597968 TNFAIP3P21580 790 aa13.72□□□□□ -0.21
TRIM28-211ENST00000597968 MMP12P39900 470 aa13.72□□□□□ -0.21
TRIM28-211ENST00000597968 CCDC173Q0VFZ6 552 aa13.72□□□□□ -0.21
TRIM28-211ENST00000597968 MAMLD1Q13495 774 aa13.72□□□□□ -0.21
TRIM28-211ENST00000597968 SPIDRQ14159 915 aa13.72□□□□□ -0.21
TRIM28-211ENST00000597968 IRF4Q15306 451 aa13.72□□□□□ -0.21
TRIM28-211ENST00000597968 AFMIDQ63HM1 303 aa13.72□□□□□ -0.21
TRIM28-211ENST00000597968 LEKR1Q6ZMV7 388 aa13.72□□□□□ -0.21
TRIM28-211ENST00000597968 CLEC14AQ86T13 490 aa13.72□□□□□ -0.21
TRIM28-211ENST00000597968 RBFAQ8N0V3 343 aa13.72□□□□□ -0.21
TRIM28-211ENST00000597968 ECHDC3Q96DC8 303 aa13.72□□□□□ -0.21
TRIM28-211ENST00000597968 TRIM11Q96F44 468 aa13.72□□□□□ -0.21
TRIM28-211ENST00000597968 LIN37Q96GY3 246 aaPredicted RBP13.72□□□□□ -0.21
TRIM28-211ENST00000597968 CCDC3Q9BQI4 270 aa13.72□□□□□ -0.21
TRIM28-211ENST00000597968 BPIFA3Q9BQP9 254 aa13.72□□□□□ -0.21
TRIM28-211ENST00000597968 APOOQ9BUR5 198 aa13.72□□□□□ -0.21
TRIM28-211ENST00000597968 CLPBQ9H078 707 aa13.72□□□□□ -0.21
TRIM28-211ENST00000597968 KLC2Q9H0B6 622 aa13.72□□□□□ -0.21
TRIM28-211ENST00000597968 PCDH12Q9NPG4 1184 aa13.72□□□□□ -0.21
TRIM28-211ENST00000597968 MBNL1Q9NR56 388 aaKnown RBP13.72□□□□□ -0.21
TRIM28-211ENST00000597968 RAI2Q9Y5P3 530 aa13.72□□□□□ -0.21
TRIM28-211ENST00000597968 SCINQ9Y6U3 715 aa13.72□□□□□ -0.21
TRIM28-211ENST00000597968 KALRNO60229 2985 aa13.72□□□□□ -0.21
TRIM28-211ENST00000597968 CCDC187A0A096LP49 1063 aa13.71□□□□□ -0.21
TRIM28-211ENST00000597968 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP13.71□□□□□ -0.21
TRIM28-211ENST00000597968 PDE2AO00408 941 aaPredicted RBP13.71□□□□□ -0.21
TRIM28-211ENST00000597968 EEF2KO00418 725 aaKnown RBP13.71□□□□□ -0.21
TRIM28-211ENST00000597968 DAPK3O43293 454 aa13.71□□□□□ -0.21
TRIM28-211ENST00000597968 PRPSAP2O60256 369 aa13.71□□□□□ -0.21
TRIM28-211ENST00000597968 TNFP01375 233 aa13.71□□□□□ -0.21
TRIM28-211ENST00000597968 ITGA2BP08514 1039 aa13.71□□□□□ -0.21
TRIM28-211ENST00000597968 MYBL1P10243 752 aa13.71□□□□□ -0.21
TRIM28-211ENST00000597968 PSMA2P25787 234 aa13.71□□□□□ -0.21
TRIM28-211ENST00000597968 HSPA9P38646 679 aaKnown RBP13.71□□□□□ -0.21
TRIM28-211ENST00000597968 LIG3P49916 1009 aa13.71□□□□□ -0.21
TRIM28-211ENST00000597968 KIAA1024LP59773 190 aa13.71□□□□□ -0.21
TRIM28-211ENST00000597968 AP1S1P61966 158 aa13.71□□□□□ -0.21
TRIM28-211ENST00000597968 CXADRP78310 365 aa13.71□□□□□ -0.21
TRIM28-211ENST00000597968 BCL2L1Q07817 233 aa13.71□□□□□ -0.21
TRIM28-211ENST00000597968 IL10RBQ08334 325 aa13.71□□□□□ -0.21
TRIM28-211ENST00000597968 NCAPHQ15003 741 aa13.71□□□□□ -0.21
TRIM28-211ENST00000597968 WSCD2Q2TBF2 565 aa13.71□□□□□ -0.21
TRIM28-211ENST00000597968 RALGPS1Q5JS13 557 aa13.71□□□□□ -0.21
TRIM28-211ENST00000597968 SRLQ86TD4 932 aa13.71□□□□□ -0.21
TRIM28-211ENST00000597968 TMEM159Q96B96 161 aa13.71□□□□□ -0.21
TRIM28-211ENST00000597968 WDR92Q96MX6 357 aa13.71□□□□□ -0.21
TRIM28-211ENST00000597968 PSKH2Q96QS6 385 aa13.71□□□□□ -0.21
TRIM28-211ENST00000597968 RBM15Q96T37 977 aaKnown RBP eCLIP13.71□□□□□ -0.215e-8■□□□□ 8.6
TRIM28-211ENST00000597968 WRAP53Q9BUR4 548 aaKnown RBP13.71□□□□□ -0.21
TRIM28-211ENST00000597968 HSD3B7Q9H2F3 369 aa13.71□□□□□ -0.21
TRIM28-211ENST00000597968 MRPL47Q9HD33 250 aaKnown RBP13.71□□□□□ -0.21
TRIM28-211ENST00000597968 AIPL1Q9NZN9 384 aa13.71□□□□□ -0.21
TRIM28-211ENST00000597968 ACSL6Q9UKU0 697 aa13.71□□□□□ -0.21
TRIM28-211ENST00000597968 SATB2Q9UPW6 733 aa13.71□□□□□ -0.21
TRIM28-211ENST00000597968 A0A1W2PQC6 194 aa13.7□□□□□ -0.22
TRIM28-211ENST00000597968 TMEM191CA6NGB0 347 aa13.7□□□□□ -0.22
TRIM28-211ENST00000597968 J3KR12 359 aa13.7□□□□□ -0.22
TRIM28-211ENST00000597968 CACNB4O00305 520 aaPredicted RBP13.7□□□□□ -0.22
TRIM28-211ENST00000597968 MUSKO15146 869 aa13.7□□□□□ -0.22
TRIM28-211ENST00000597968 PIGNO95427 931 aa13.7□□□□□ -0.22
TRIM28-211ENST00000597968 MYF5P13349 255 aa13.7□□□□□ -0.22
TRIM28-211ENST00000597968 PCK1P35558 622 aa13.7□□□□□ -0.22
TRIM28-211ENST00000597968 TRIM23P36406 574 aa13.7□□□□□ -0.22
TRIM28-211ENST00000597968 PRKCIP41743 596 aa13.7□□□□□ -0.22
TRIM28-211ENST00000597968 PAPOLAP51003 745 aaKnown RBP13.7□□□□□ -0.22
TRIM28-211ENST00000597968 SRP54P61011 504 aaKnown RBP13.7□□□□□ -0.22
TRIM28-211ENST00000597968 PEX6Q13608 980 aa13.7□□□□□ -0.22
TRIM28-211ENST00000597968 INPP5AQ14642 412 aa13.7□□□□□ -0.22
TRIM28-211ENST00000597968 TSR1Q2NL82 804 aaKnown RBP13.7□□□□□ -0.22
TRIM28-211ENST00000597968 ALG11Q2TAA5 492 aa13.7□□□□□ -0.22
TRIM28-211ENST00000597968 FILIP1LQ4L180 1135 aa13.7□□□□□ -0.22
TRIM28-211ENST00000597968 C3orf38Q5JPI3 329 aa13.7□□□□□ -0.22
TRIM28-211ENST00000597968 CCDC183Q5T5S1 534 aa13.7□□□□□ -0.22
TRIM28-211ENST00000597968 ENPP7Q6UWV6 458 aa13.7□□□□□ -0.22
TRIM28-211ENST00000597968 RFX8Q6ZV50 586 aa13.7□□□□□ -0.22
TRIM28-211ENST00000597968 ATXN7L3BQ96GX2 97 aa13.7□□□□□ -0.22
TRIM28-211ENST00000597968 TMEM74Q96NL1 305 aa13.7□□□□□ -0.22
TRIM28-211ENST00000597968 CINPQ9BW66 212 aaPredicted RBP13.7□□□□□ -0.22
TRIM28-211ENST00000597968 SLC39A8Q9C0K1 460 aa13.7□□□□□ -0.22
TRIM28-211ENST00000597968 STRADBQ9C0K7 418 aa13.7□□□□□ -0.22
TRIM28-211ENST00000597968 TCEAL2Q9H3H9 227 aaPredicted RBP13.7□□□□□ -0.22
TRIM28-211ENST00000597968 ZWILCHQ9H900 591 aa13.7□□□□□ -0.22
TRIM28-211ENST00000597968 KLQ9UEF7 1012 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms