RNA–Protein interactions for RNA: ENST00000596121.5

VRK3-210, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 983 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-210ENST00000596121 PRKD1Q15139 912 aaPredicted RBP11.23□□□□□ -0.61
VRK3-210ENST00000596121 TEAD4Q15561 434 aa11.23□□□□□ -0.61
VRK3-210ENST00000596121 TFDP3Q5H9I0 405 aa11.23□□□□□ -0.61
VRK3-210ENST00000596121 BRAT1Q6PJG6 821 aa11.23□□□□□ -0.61
VRK3-210ENST00000596121 DGLUCYQ7Z3D6 616 aa11.23□□□□□ -0.61
VRK3-210ENST00000596121 ABI3BPQ7Z7G0 1075 aa11.23□□□□□ -0.61
VRK3-210ENST00000596121 SLC22A18ASQ8N1D0 253 aa11.23□□□□□ -0.61
VRK3-210ENST00000596121 MFSD2AQ8NA29 543 aa11.23□□□□□ -0.61
VRK3-210ENST00000596121 OR13H1Q8NG92 308 aa11.23□□□□□ -0.61
VRK3-210ENST00000596121 NSMCE1Q8WV22 266 aa11.23□□□□□ -0.61
VRK3-210ENST00000596121 PIH1D2Q8WWB5 315 aa11.23□□□□□ -0.61
VRK3-210ENST00000596121 SPOCK2Q92563 424 aa11.23□□□□□ -0.61
VRK3-210ENST00000596121 FUBP1Q96AE4 644 aaKnown RBP11.23□□□□□ -0.61
VRK3-210ENST00000596121 CENPTQ96BT3 561 aa11.23□□□□□ -0.61
VRK3-210ENST00000596121 HAUS1Q96CS2 278 aa11.23□□□□□ -0.61
VRK3-210ENST00000596121 C10orf88Q9H8K7 445 aa11.23□□□□□ -0.61
VRK3-210ENST00000596121 MBNL1Q9NR56 388 aaKnown RBP11.23□□□□□ -0.61
VRK3-210ENST00000596121 TPX2Q9ULW0 747 aaKnown RBP11.23□□□□□ -0.61
VRK3-210ENST00000596121 PCDHB9Q9Y5E1 797 aa11.23□□□□□ -0.61
VRK3-210ENST00000596121 RAI2Q9Y5P3 530 aa11.23□□□□□ -0.61
VRK3-210ENST00000596121 TMEM131Q92545 1883 aa11.23□□□□□ -0.61
VRK3-210ENST00000596121 ANKRD36A6QL64 1941 aa11.23□□□□□ -0.61
VRK3-210ENST00000596121 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP11.22□□□□□ -0.61
VRK3-210ENST00000596121 MED19A0JLT2 244 aaPredicted RBP11.22□□□□□ -0.61
VRK3-210ENST00000596121 GOLGA6L6A8MZA4 724 aa11.22□□□□□ -0.61
VRK3-210ENST00000596121 SH3BP5O60239 455 aa11.22□□□□□ -0.61
VRK3-210ENST00000596121 FZD6O60353 706 aa11.22□□□□□ -0.61
VRK3-210ENST00000596121 KCNK5O95279 499 aa11.22□□□□□ -0.61
VRK3-210ENST00000596121 PGLSO95336 258 aa11.22□□□□□ -0.61
VRK3-210ENST00000596121 ZFXP17010 805 aaPredicted RBP11.22□□□□□ -0.61
VRK3-210ENST00000596121 HNRNPA2B1P22626 353 aaKnown RBP11.22□□□□□ -0.61
VRK3-210ENST00000596121 MMP12P39900 470 aa11.22□□□□□ -0.61
VRK3-210ENST00000596121 LIG3P49916 1009 aa11.22□□□□□ -0.61
VRK3-210ENST00000596121 C21orf59P57076 290 aa11.22□□□□□ -0.61
VRK3-210ENST00000596121 ITKQ08881 620 aa11.22□□□□□ -0.61
VRK3-210ENST00000596121 AP1B1Q10567 949 aa11.22□□□□□ -0.61
VRK3-210ENST00000596121 WASHC5Q12768 1159 aa11.22□□□□□ -0.61
VRK3-210ENST00000596121 ZNF211Q13398 564 aaPredicted RBP11.22□□□□□ -0.61
VRK3-210ENST00000596121 TFDP2Q14188 446 aa11.22□□□□□ -0.61
VRK3-210ENST00000596121 STAT4Q14765 748 aa11.22□□□□□ -0.61
VRK3-210ENST00000596121 PDK1Q15118 436 aa11.22□□□□□ -0.61
VRK3-210ENST00000596121 PPP2R5EQ16537 467 aa11.22□□□□□ -0.61
VRK3-210ENST00000596121 TIGD7Q6NT04 549 aaPredicted RBP11.22□□□□□ -0.61
VRK3-210ENST00000596121 IL27RAQ6UWB1 636 aa11.22□□□□□ -0.61
VRK3-210ENST00000596121 DBX2Q6ZNG2 339 aa11.22□□□□□ -0.61
VRK3-210ENST00000596121 NYAP1Q6ZVC0 841 aa11.22□□□□□ -0.61
VRK3-210ENST00000596121 BBS12Q6ZW61 710 aa11.22□□□□□ -0.61
VRK3-210ENST00000596121 ADAT2Q7Z6V5 191 aaKnown RBP11.22□□□□□ -0.61
VRK3-210ENST00000596121 CCDC50Q8IVM0 306 aa11.22□□□□□ -0.61
VRK3-210ENST00000596121 CBARPQ8N350 705 aaPredicted RBP11.22□□□□□ -0.61
VRK3-210ENST00000596121 TP53I13Q8NBR0 393 aaPredicted RBP11.22□□□□□ -0.61
VRK3-210ENST00000596121 DEFB124Q8NES8 71 aa11.22□□□□□ -0.61
VRK3-210ENST00000596121 ASB12Q8WXK4 309 aa11.22□□□□□ -0.61
VRK3-210ENST00000596121 CALR3Q96L12 384 aaKnown RBP11.22□□□□□ -0.61
VRK3-210ENST00000596121 LENG8Q96PV6 779 aaPredicted RBP11.22□□□□□ -0.61
VRK3-210ENST00000596121 POLR1EQ9GZS1 481 aaKnown RBP11.22□□□□□ -0.61
VRK3-210ENST00000596121 GPR27Q9NS67 375 aa11.22□□□□□ -0.61
VRK3-210ENST00000596121 TM7SF3Q9NS93 570 aa11.22□□□□□ -0.61
VRK3-210ENST00000596121 B4GALT6Q9UBX8 382 aa11.22□□□□□ -0.61
VRK3-210ENST00000596121 GUCA1BQ9UMX6 200 aa11.22□□□□□ -0.61
VRK3-210ENST00000596121 BTBD3Q9Y2F9 522 aa11.22□□□□□ -0.61
VRK3-210ENST00000596121 LRRK1Q38SD2 2015 aa11.21□□□□□ -0.61
VRK3-210ENST00000596121 A0A1B0GTQ1 180 aa11.21□□□□□ -0.61
VRK3-210ENST00000596121 CCDC66A2RUB6 948 aa11.21□□□□□ -0.61
VRK3-210ENST00000596121 GOLGA8CPA6NN73 597 aa11.21□□□□□ -0.61
VRK3-210ENST00000596121 CBFA2T3O75081 653 aa11.21□□□□□ -0.61
VRK3-210ENST00000596121 SOCS5O75159 536 aa11.21□□□□□ -0.61
VRK3-210ENST00000596121 CER1O95813 267 aa11.21□□□□□ -0.61
VRK3-210ENST00000596121 ZNF883P0CG24 379 aa11.21□□□□□ -0.61
VRK3-210ENST00000596121 THEGLP0DJG4 465 aa11.21□□□□□ -0.61
VRK3-210ENST00000596121 C6P13671 934 aa11.21□□□□□ -0.61
VRK3-210ENST00000596121 CTPS1P17812 591 aa11.21□□□□□ -0.61
VRK3-210ENST00000596121 CSRP1P21291 193 aaKnown RBP11.21□□□□□ -0.61
VRK3-210ENST00000596121 TGM2P21980 687 aa11.21□□□□□ -0.61
VRK3-210ENST00000596121 XPAP23025 273 aaPredicted RBP11.21□□□□□ -0.61
VRK3-210ENST00000596121 PTPN3P26045 913 aa11.21□□□□□ -0.61
VRK3-210ENST00000596121 AKT2P31751 481 aa11.21□□□□□ -0.61
VRK3-210ENST00000596121 CD68P34810 354 aaPredicted RBP11.21□□□□□ -0.61
VRK3-210ENST00000596121 PTPN7P35236 360 aa11.21□□□□□ -0.61
VRK3-210ENST00000596121 IGFALSP35858 605 aa11.21□□□□□ -0.61
VRK3-210ENST00000596121 NR2C2P49116 596 aa11.21□□□□□ -0.61
VRK3-210ENST00000596121 SUOXP51687 545 aa11.21□□□□□ -0.61
VRK3-210ENST00000596121 RWDD2BP57060 319 aa11.21□□□□□ -0.61
VRK3-210ENST00000596121 SKOR1P84550 965 aa11.21□□□□□ -0.61
VRK3-210ENST00000596121 BNIP3Q12983 259 aa11.21□□□□□ -0.61
VRK3-210ENST00000596121 SGCGQ13326 291 aa11.21□□□□□ -0.61
VRK3-210ENST00000596121 WSCD2Q2TBF2 565 aa11.21□□□□□ -0.61
VRK3-210ENST00000596121 ODF2Q5BJF6 829 aa11.21□□□□□ -0.61
VRK3-210ENST00000596121 PPM1JQ5JR12 505 aa11.21□□□□□ -0.61
VRK3-210ENST00000596121 RALGPS1Q5JS13 557 aa11.21□□□□□ -0.61
VRK3-210ENST00000596121 LIPIQ6XZB0 460 aa11.21□□□□□ -0.61
VRK3-210ENST00000596121 Q6ZSR6 202 aa11.21□□□□□ -0.61
VRK3-210ENST00000596121 DPPA4Q7L190 304 aa11.21□□□□□ -0.61
VRK3-210ENST00000596121 PEX26Q7Z412 305 aa11.21□□□□□ -0.61
VRK3-210ENST00000596121 TSPAN33Q86UF1 283 aa11.21□□□□□ -0.61
VRK3-210ENST00000596121 ZC3H18Q86VM9 953 aaKnown RBP11.21□□□□□ -0.61
VRK3-210ENST00000596121 IQCHQ86VS3 1027 aa11.21□□□□□ -0.61
VRK3-210ENST00000596121 PELI3Q8N2H9 469 aa11.21□□□□□ -0.61
VRK3-210ENST00000596121 BBS5Q8N3I7 341 aa11.21□□□□□ -0.61
VRK3-210ENST00000596121 CCDC112Q8NEF3 446 aa11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms