RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 PCDH12Q9NPG4 1184 aa15.14■□□□□ 0.01
UPF1-202ENST00000594243 LZTFL1Q9NQ48 299 aa15.14■□□□□ 0.01
UPF1-202ENST00000594243 DNAAF2Q9NVR5 837 aaKnown RBP15.14■□□□□ 0.01
UPF1-202ENST00000594243 GGT7Q9UJ14 662 aa15.14■□□□□ 0.01
UPF1-202ENST00000594243 PHTF1Q9UMS5 762 aa15.14■□□□□ 0.01
UPF1-202ENST00000594243 PACSIN2Q9UNF0 486 aaPredicted RBP15.14■□□□□ 0.01
UPF1-202ENST00000594243 ITM2BQ9Y287 266 aa15.14■□□□□ 0.01
UPF1-202ENST00000594243 TTLL3Q9Y4R7 772 aa15.14■□□□□ 0.01
UPF1-202ENST00000594243 SNX11Q9Y5W9 270 aa15.14■□□□□ 0.01
UPF1-202ENST00000594243 A0A1W2PR77 199 aa15.13■□□□□ 0.01
UPF1-202ENST00000594243 CFAP69A5D8W1 941 aa15.13■□□□□ 0.01
UPF1-202ENST00000594243 HACD1B0YJ81 288 aa15.13■□□□□ 0.01
UPF1-202ENST00000594243 TLR4O00206 839 aa15.13■□□□□ 0.01
UPF1-202ENST00000594243 WNT9AO14904 365 aa15.13■□□□□ 0.01
UPF1-202ENST00000594243 SPINT1O43278 529 aa15.13■□□□□ 0.01
UPF1-202ENST00000594243 MMP20O60882 483 aa15.13■□□□□ 0.01
UPF1-202ENST00000594243 WNT1P04628 370 aa15.13■□□□□ 0.01
UPF1-202ENST00000594243 HLA-DQB2P05538 268 aa15.13■□□□□ 0.01
UPF1-202ENST00000594243 PTMAP06454 111 aaKnown RBP15.13■□□□□ 0.01
UPF1-202ENST00000594243 PECAM1P16284 738 aaPredicted RBP15.13■□□□□ 0.01
UPF1-202ENST00000594243 PRLRP16471 622 aa15.13■□□□□ 0.01
UPF1-202ENST00000594243 ITIH2P19823 946 aa15.13■□□□□ 0.01
UPF1-202ENST00000594243 CA4P22748 312 aa15.13■□□□□ 0.01
UPF1-202ENST00000594243 FAM193AP78312 1265 aa15.13■□□□□ 0.01
UPF1-202ENST00000594243 SLC14A1Q13336 389 aa15.13■□□□□ 0.01
UPF1-202ENST00000594243 XRCC4Q13426 336 aa15.13■□□□□ 0.01
UPF1-202ENST00000594243 HLA-BQ31612 363 aa15.13■□□□□ 0.01
UPF1-202ENST00000594243 UAP1L1Q3KQV9 507 aa15.13■□□□□ 0.01
UPF1-202ENST00000594243 TEX44Q53QW1 395 aa15.13■□□□□ 0.01
UPF1-202ENST00000594243 LRRC73Q5JTD7 316 aa15.13■□□□□ 0.01
UPF1-202ENST00000594243 ZC3H18Q86VM9 953 aaKnown RBP15.13■□□□□ 0.01
UPF1-202ENST00000594243 ZSWIM9Q86XI8 627 aa15.13■□□□□ 0.01
UPF1-202ENST00000594243 KLHDC7BQ96G42 594 aa15.13■□□□□ 0.01
UPF1-202ENST00000594243 FERMT1Q9BQL6 677 aa15.13■□□□□ 0.01
UPF1-202ENST00000594243 WRAP53Q9BUR4 548 aaKnown RBP15.13■□□□□ 0.01
UPF1-202ENST00000594243 SEPT10Q9P0V9 454 aa15.13■□□□□ 0.01
UPF1-202ENST00000594243 PPP2R2CQ9Y2T4 447 aa15.13■□□□□ 0.01
UPF1-202ENST00000594243 PCDHB9Q9Y5E1 797 aa15.13■□□□□ 0.01
UPF1-202ENST00000594243 RAI2Q9Y5P3 530 aa15.13■□□□□ 0.01
UPF1-202ENST00000594243 GOLGA6L9A6NEM1 432 aa15.12■□□□□ 0.01
UPF1-202ENST00000594243 FPGTO14772 594 aa15.12■□□□□ 0.01
UPF1-202ENST00000594243 DDX3YO15523 660 aaKnown RBP15.12■□□□□ 0.01
UPF1-202ENST00000594243 PGLSO95336 258 aa15.12■□□□□ 0.01
UPF1-202ENST00000594243 CPP00450 1065 aa15.12■□□□□ 0.01
UPF1-202ENST00000594243 ZNF883P0CG24 379 aa15.12■□□□□ 0.01
UPF1-202ENST00000594243 CTSKP43235 329 aa15.12■□□□□ 0.01
UPF1-202ENST00000594243 BNC1Q01954 994 aa15.12■□□□□ 0.01
UPF1-202ENST00000594243 DSC2Q02487 901 aa15.12■□□□□ 0.01
UPF1-202ENST00000594243 TRAF2Q12933 501 aa15.12■□□□□ 0.01
UPF1-202ENST00000594243 ZBTB17Q13105 803 aa15.12■□□□□ 0.01
UPF1-202ENST00000594243 PRKD1Q15139 912 aaPredicted RBP15.12■□□□□ 0.01
UPF1-202ENST00000594243 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP15.12■□□□□ 0.01
UPF1-202ENST00000594243 CNTD1Q8N815 330 aa15.12■□□□□ 0.01
UPF1-202ENST00000594243 TMEM145Q8NBT3 493 aa15.12■□□□□ 0.01
UPF1-202ENST00000594243 ARRDC2Q8TBH0 407 aa15.12■□□□□ 0.01
UPF1-202ENST00000594243 HAUS1Q96CS2 278 aa15.12■□□□□ 0.01
UPF1-202ENST00000594243 AGAP3Q96P47 875 aa15.12■□□□□ 0.01
UPF1-202ENST00000594243 VAT1Q99536 393 aa15.12■□□□□ 0.01
UPF1-202ENST00000594243 GDF3Q9NR23 364 aa15.12■□□□□ 0.01
UPF1-202ENST00000594243 PPIL1Q9Y3C6 166 aa15.12■□□□□ 0.01
UPF1-202ENST00000594243 TM4SF5O14894 197 aa15.11■□□□□ 0.01
UPF1-202ENST00000594243 LZTS3O60299 673 aaPredicted RBP15.11■□□□□ 0.01
UPF1-202ENST00000594243 FZD6O60353 706 aa15.11■□□□□ 0.01
UPF1-202ENST00000594243 CYP2A6P11509 494 aaPredicted RBP15.11■□□□□ 0.01
UPF1-202ENST00000594243 MMP12P39900 470 aa15.11■□□□□ 0.01
UPF1-202ENST00000594243 LIG3P49916 1009 aa15.11■□□□□ 0.01
UPF1-202ENST00000594243 NXPH1P58417 271 aa15.11■□□□□ 0.01
UPF1-202ENST00000594243 ZNF211Q13398 564 aaPredicted RBP15.11■□□□□ 0.01
UPF1-202ENST00000594243 FGL2Q14314 439 aa15.11■□□□□ 0.01
UPF1-202ENST00000594243 GSE1Q14687 1217 aa15.11■□□□□ 0.01
UPF1-202ENST00000594243 SUZ12Q15022 739 aaKnown RBP15.11■□□□□ 0.01
UPF1-202ENST00000594243 NOMO1Q15155 1222 aa15.11■□□□□ 0.01
UPF1-202ENST00000594243 ZNF423Q2M1K9 1284 aa15.11■□□□□ 0.01
UPF1-202ENST00000594243 LAYNQ6UX15 382 aa15.11■□□□□ 0.01
UPF1-202ENST00000594243 B4GALNT4Q76KP1 1039 aa15.11■□□□□ 0.01
UPF1-202ENST00000594243 DPPA4Q7L190 304 aa15.11■□□□□ 0.01
UPF1-202ENST00000594243 DCP2Q8IU60 420 aaKnown RBP15.11■□□□□ 0.01
UPF1-202ENST00000594243 OXR1Q8N573 874 aa15.11■□□□□ 0.01
UPF1-202ENST00000594243 TTC13Q8NBP0 860 aa15.11■□□□□ 0.01
UPF1-202ENST00000594243 DENND6BQ8NEG7 585 aa15.11■□□□□ 0.01
UPF1-202ENST00000594243 TRIM58Q8NG06 486 aa15.11■□□□□ 0.01
UPF1-202ENST00000594243 OR2I1PQ8NGU4 316 aa15.11■□□□□ 0.01
UPF1-202ENST00000594243 HTR3CQ8WXA8 447 aa15.11■□□□□ 0.01
UPF1-202ENST00000594243 SCRN2Q96FV2 425 aa15.11■□□□□ 0.01
UPF1-202ENST00000594243 TEKT5Q96M29 485 aa15.11■□□□□ 0.01
UPF1-202ENST00000594243 MYOCQ99972 504 aa15.11■□□□□ 0.01
UPF1-202ENST00000594243 ERVMER34-1Q9H9K5 563 aa15.11■□□□□ 0.01
UPF1-202ENST00000594243 FZD3Q9NPG1 666 aa15.11■□□□□ 0.01
UPF1-202ENST00000594243 TM7SF3Q9NS93 570 aa15.11■□□□□ 0.01
UPF1-202ENST00000594243 NUMA1Q14980 2115 aa15.11■□□□□ 0.01
UPF1-202ENST00000594243 PLXNA2O75051 1894 aa15.1■□□□□ 0.01
UPF1-202ENST00000594243 A6NNZ2 444 aa15.1■□□□□ 0.01
UPF1-202ENST00000594243 H7C0C1 242 aa15.1■□□□□ 0.01
UPF1-202ENST00000594243 ZNF189O75820 626 aaPredicted RBP15.1■□□□□ 0.01
UPF1-202ENST00000594243 PRKCGP05129 697 aa15.1■□□□□ 0.01
UPF1-202ENST00000594243 ELFN1P0C7U0 828 aa15.1■□□□□ 0.01
UPF1-202ENST00000594243 THEGLP0DJG4 465 aa15.1■□□□□ 0.01
UPF1-202ENST00000594243 C6P13671 934 aa15.1■□□□□ 0.01
UPF1-202ENST00000594243 PTPN3P26045 913 aa15.1■□□□□ 0.01
UPF1-202ENST00000594243 CD86P42081 329 aa15.1■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms