RNA–Protein interactions for RNA: ENST00000589823.6

VMP1-210, Transcript of vacuole membrane protein 1, humanhuman

TSL 3

Gene VMP1, Length 580 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-210ENST00000589823 ZNF528Q3MIS6 628 aa13.71□□□□□ -0.21
VMP1-210ENST00000589823 SYCP2LQ5T4T6 812 aa13.71□□□□□ -0.21
VMP1-210ENST00000589823 AGBL4Q5VU57 503 aa13.71□□□□□ -0.21
VMP1-210ENST00000589823 NAPEPLDQ6IQ20 393 aa13.71□□□□□ -0.21
VMP1-210ENST00000589823 USP45Q70EL2 814 aa13.71□□□□□ -0.21
VMP1-210ENST00000589823 LINC00523Q86TU6 105 aa13.71□□□□□ -0.21
VMP1-210ENST00000589823 ZSWIM9Q86XI8 627 aa13.71□□□□□ -0.21
VMP1-210ENST00000589823 KLHDC8BQ8IXV7 354 aa13.71□□□□□ -0.21
VMP1-210ENST00000589823 PDCD7Q8N8D1 485 aaKnown RBP13.71□□□□□ -0.21
VMP1-210ENST00000589823 OR14C36Q8NHC7 312 aa13.71□□□□□ -0.21
VMP1-210ENST00000589823 PIH1D2Q8WWB5 315 aa13.71□□□□□ -0.21
VMP1-210ENST00000589823 SPOCK2Q92563 424 aa13.71□□□□□ -0.21
VMP1-210ENST00000589823 TBL1YQ9BQ87 522 aa13.71□□□□□ -0.21
VMP1-210ENST00000589823 TRIM51Q9BSJ1 452 aa13.71□□□□□ -0.21
VMP1-210ENST00000589823 SGK2Q9HBY8 427 aa13.71□□□□□ -0.21
VMP1-210ENST00000589823 UTP11Q9Y3A2 253 aaKnown RBP13.71□□□□□ -0.21
VMP1-210ENST00000589823 IGHV1OR15-9A0A0B4J2B8 117 aa13.7□□□□□ -0.22
VMP1-210ENST00000589823 LOC285095A0A1B0GVY8 99 aa13.7□□□□□ -0.22
VMP1-210ENST00000589823 LRRC72A6NJI9 287 aa13.7□□□□□ -0.22
VMP1-210ENST00000589823 EFCAB8A8MWE9 144 aa13.7□□□□□ -0.22
VMP1-210ENST00000589823 ANKRD66B4E2M5 251 aa13.7□□□□□ -0.22
VMP1-210ENST00000589823 AGTP01019 485 aa13.7□□□□□ -0.22
VMP1-210ENST00000589823 PRLP01236 227 aa13.7□□□□□ -0.22
VMP1-210ENST00000589823 FGF1P05230 155 aa13.7□□□□□ -0.22
VMP1-210ENST00000589823 SP9P0CG40 484 aa13.7□□□□□ -0.22
VMP1-210ENST00000589823 CD6P30203 668 aa13.7□□□□□ -0.22
VMP1-210ENST00000589823 ABL2P42684 1182 aa13.7□□□□□ -0.22
VMP1-210ENST00000589823 MRPS25P82663 173 aaKnown RBP13.7□□□□□ -0.22
VMP1-210ENST00000589823 CDK16Q00536 496 aa13.7□□□□□ -0.22
VMP1-210ENST00000589823 SPARCL1Q14515 664 aa13.7□□□□□ -0.22
VMP1-210ENST00000589823 SLC1A5Q15758 541 aa13.7□□□□□ -0.22
VMP1-210ENST00000589823 LRRC73Q5JTD7 316 aa13.7□□□□□ -0.22
VMP1-210ENST00000589823 PIP5KL1Q5T9C9 394 aa13.7□□□□□ -0.22
VMP1-210ENST00000589823 KCTD11Q693B1 232 aa13.7□□□□□ -0.22
VMP1-210ENST00000589823 SLC36A4Q6YBV0 504 aa13.7□□□□□ -0.22
VMP1-210ENST00000589823 PPP1R21Q6ZMI0 780 aa13.7□□□□□ -0.22
VMP1-210ENST00000589823 PCGF5Q86SE9 256 aa13.7□□□□□ -0.22
VMP1-210ENST00000589823 SLC25A41Q8N5S1 370 aa13.7□□□□□ -0.22
VMP1-210ENST00000589823 RLN3Q8WXF3 142 aa13.7□□□□□ -0.22
VMP1-210ENST00000589823 FAM131CQ96AQ9 280 aa13.7□□□□□ -0.22
VMP1-210ENST00000589823 TRIB3Q96RU7 358 aa13.7□□□□□ -0.22
VMP1-210ENST00000589823 PRRX2Q99811 253 aa13.7□□□□□ -0.22
VMP1-210ENST00000589823 RAB17Q9H0T7 212 aa13.7□□□□□ -0.22
VMP1-210ENST00000589823 KDM4CQ9H3R0 1056 aa13.7□□□□□ -0.22
VMP1-210ENST00000589823 PCDH12Q9NPG4 1184 aa13.7□□□□□ -0.22
VMP1-210ENST00000589823 CD93Q9NPY3 652 aa13.7□□□□□ -0.22
VMP1-210ENST00000589823 EIF2B3Q9NR50 452 aaKnown RBP13.7□□□□□ -0.22
VMP1-210ENST00000589823 PPIL1Q9Y3C6 166 aa13.7□□□□□ -0.22
VMP1-210ENST00000589823 FAM47DPA6NHR8 397 aa13.69□□□□□ -0.22
VMP1-210ENST00000589823 DNALI1O14645 258 aaPredicted RBP13.69□□□□□ -0.22
VMP1-210ENST00000589823 RIOK3O14730 519 aaKnown RBP13.69□□□□□ -0.22
VMP1-210ENST00000589823 NDC80O14777 642 aa13.69□□□□□ -0.22
VMP1-210ENST00000589823 MAP3K13O43283 966 aa13.69□□□□□ -0.22
VMP1-210ENST00000589823 PLRG1O43660 514 aaKnown RBP13.69□□□□□ -0.22
VMP1-210ENST00000589823 AP1G1O43747 822 aa13.69□□□□□ -0.22
VMP1-210ENST00000589823 NDUFS2O75306 463 aa13.69□□□□□ -0.22
VMP1-210ENST00000589823 USP12O75317 370 aa13.69□□□□□ -0.22
VMP1-210ENST00000589823 SUN1O94901 812 aa13.69□□□□□ -0.22
VMP1-210ENST00000589823 SEMA4FO95754 770 aa13.69□□□□□ -0.22
VMP1-210ENST00000589823 PRKCGP05129 697 aa13.69□□□□□ -0.22
VMP1-210ENST00000589823 CYP2A6P11509 494 aaPredicted RBP13.69□□□□□ -0.22
VMP1-210ENST00000589823 CTPS1P17812 591 aa13.69□□□□□ -0.22
VMP1-210ENST00000589823 TPSB2P20231 275 aa13.69□□□□□ -0.22
VMP1-210ENST00000589823 ADRA1AP35348 466 aa13.69□□□□□ -0.22
VMP1-210ENST00000589823 ADPRHP54922 357 aa13.69□□□□□ -0.22
VMP1-210ENST00000589823 FAM193AP78312 1265 aa13.69□□□□□ -0.22
VMP1-210ENST00000589823 SARNPP82979 210 aaKnown RBP13.69□□□□□ -0.22
VMP1-210ENST00000589823 TPSAB1Q15661 275 aa13.69□□□□□ -0.22
VMP1-210ENST00000589823 QPCTQ16769 361 aa13.69□□□□□ -0.22
VMP1-210ENST00000589823 MAP7D1Q3KQU3 841 aa13.69□□□□□ -0.22
VMP1-210ENST00000589823 GLE1Q53GS7 698 aaKnown RBP13.69□□□□□ -0.22
VMP1-210ENST00000589823 SIRPB2Q5JXA9 342 aa13.69□□□□□ -0.22
VMP1-210ENST00000589823 IZUMO3Q5VZ72 239 aa13.69□□□□□ -0.22
VMP1-210ENST00000589823 RANBP10Q6VN20 620 aa13.69□□□□□ -0.22
VMP1-210ENST00000589823 PPIL6Q8IXY8 311 aa13.69□□□□□ -0.22
VMP1-210ENST00000589823 DNAAF3Q8N9W5 541 aa13.69□□□□□ -0.22
VMP1-210ENST00000589823 NOA1Q8NC60 698 aaKnown RBP13.69□□□□□ -0.22
VMP1-210ENST00000589823 CPT1BQ92523 772 aa13.69□□□□□ -0.22
VMP1-210ENST00000589823 SCRN2Q96FV2 425 aa13.69□□□□□ -0.22
VMP1-210ENST00000589823 TOE1Q96GM8 510 aaKnown RBP13.69□□□□□ -0.22
VMP1-210ENST00000589823 SRPK1Q96SB4 655 aaKnown RBP13.69□□□□□ -0.22
VMP1-210ENST00000589823 APOL2Q9BQE5 337 aa13.69□□□□□ -0.22
VMP1-210ENST00000589823 ERP44Q9BS26 406 aa13.69□□□□□ -0.22
VMP1-210ENST00000589823 LRRC1Q9BTT6 524 aa13.69□□□□□ -0.22
VMP1-210ENST00000589823 TRIM31Q9BZY9 425 aa13.69□□□□□ -0.22
VMP1-210ENST00000589823 PREBQ9HCU5 417 aa13.69□□□□□ -0.22
VMP1-210ENST00000589823 ZSCAN32Q9NX65 697 aa13.69□□□□□ -0.22
VMP1-210ENST00000589823 WSB2Q9NYS7 404 aaPredicted RBP13.69□□□□□ -0.22
VMP1-210ENST00000589823 TPX2Q9ULW0 747 aaKnown RBP13.69□□□□□ -0.22
VMP1-210ENST00000589823 INVSQ9Y283 1065 aa13.69□□□□□ -0.22
VMP1-210ENST00000589823 FADS3Q9Y5Q0 445 aa13.69□□□□□ -0.22
VMP1-210ENST00000589823 KMT2EQ8IZD2 1858 aa13.69□□□□□ -0.22
VMP1-210ENST00000589823 ANKRD36A6QL64 1941 aa13.68□□□□□ -0.22
VMP1-210ENST00000589823 TBC1D3DA0A087WVF3 549 aa13.68□□□□□ -0.22
VMP1-210ENST00000589823 TBC1D3IA0A087WXS9 549 aa13.68□□□□□ -0.22
VMP1-210ENST00000589823 TBC1D3EA0A087X179 549 aa13.68□□□□□ -0.22
VMP1-210ENST00000589823 TBC1D3KA0A087X1G2 549 aa13.68□□□□□ -0.22
VMP1-210ENST00000589823 A0A0J9YYE9 177 aa13.68□□□□□ -0.22
VMP1-210ENST00000589823 TBC1D3FA6NER0 549 aaPredicted RBP13.68□□□□□ -0.22
VMP1-210ENST00000589823 CAPN8A6NHC0 703 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms