RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 AP1S1P61966 158 aa14.26□□□□□ -0.13
LIG3-205ENST00000585941 IRX4P78413 519 aa14.26□□□□□ -0.13
LIG3-205ENST00000585941 SLC20A2Q08357 652 aa14.26□□□□□ -0.13
LIG3-205ENST00000585941 GALNT3Q14435 633 aa14.26□□□□□ -0.13
LIG3-205ENST00000585941 TAF1AQ15573 450 aaPredicted RBP14.26□□□□□ -0.13
LIG3-205ENST00000585941 FSCBQ5H9T9 825 aa14.26□□□□□ -0.13
LIG3-205ENST00000585941 SLC41A1Q8IVJ1 513 aa14.26□□□□□ -0.13
LIG3-205ENST00000585941 C10orf67Q8IYJ2 551 aa14.26□□□□□ -0.13
LIG3-205ENST00000585941 ZNF557Q8N988 423 aaPredicted RBP14.26□□□□□ -0.13
LIG3-205ENST00000585941 FIBINQ8TAL6 211 aa14.26□□□□□ -0.13
LIG3-205ENST00000585941 PPP4R1Q8TF05 950 aa14.26□□□□□ -0.13
LIG3-205ENST00000585941 POF1BQ8WVV4 589 aa14.26□□□□□ -0.13
LIG3-205ENST00000585941 RMDN1Q96DB5 314 aa14.26□□□□□ -0.13
LIG3-205ENST00000585941 ALG14Q96F25 216 aa14.26□□□□□ -0.13
LIG3-205ENST00000585941 THOC1Q96FV9 657 aaKnown RBP14.26□□□□□ -0.13
LIG3-205ENST00000585941 ELMO2Q96JJ3 720 aa14.26□□□□□ -0.13
LIG3-205ENST00000585941 TXLNGQ9NUQ3 528 aa14.26□□□□□ -0.13
LIG3-205ENST00000585941 HACD3Q9P035 362 aa14.26□□□□□ -0.13
LIG3-205ENST00000585941 VPS51Q9UID3 782 aa14.26□□□□□ -0.13
LIG3-205ENST00000585941 RAI2Q9Y5P3 530 aa14.26□□□□□ -0.13
LIG3-205ENST00000585941 CAPN7Q9Y6W3 813 aa14.26□□□□□ -0.13
LIG3-205ENST00000585941 A0A0G2JND7 137 aa14.26□□□□□ -0.13
LIG3-205ENST00000585941 CCDC195A0A1B0GUA6 201 aa14.26□□□□□ -0.13
LIG3-205ENST00000585941 CFAP73A6NFT4 308 aa14.26□□□□□ -0.13
LIG3-205ENST00000585941 C2orf81A6NN90 581 aa14.26□□□□□ -0.13
LIG3-205ENST00000585941 HIDE1A8MVS5 230 aa14.26□□□□□ -0.13
LIG3-205ENST00000585941 CCL16O15467 120 aa14.26□□□□□ -0.13
LIG3-205ENST00000585941 HAUS5O94927 633 aa14.26□□□□□ -0.13
LIG3-205ENST00000585941 CD160O95971 181 aa14.26□□□□□ -0.13
LIG3-205ENST00000585941 EN2P19622 333 aaPredicted RBP14.26□□□□□ -0.13
LIG3-205ENST00000585941 OGNP20774 298 aaKnown RBP14.26□□□□□ -0.13
LIG3-205ENST00000585941 SLC26A3P40879 764 aa14.26□□□□□ -0.13
LIG3-205ENST00000585941 CSKP41240 450 aa14.26□□□□□ -0.13
LIG3-205ENST00000585941 RGRP47804 291 aa14.26□□□□□ -0.13
LIG3-205ENST00000585941 CSNK1DP48730 415 aa14.26□□□□□ -0.13
LIG3-205ENST00000585941 RHOAP61586 193 aa14.26□□□□□ -0.13
LIG3-205ENST00000585941 ASPHQ12797 758 aa14.26□□□□□ -0.13
LIG3-205ENST00000585941 DLG2Q15700 870 aa14.26□□□□□ -0.13
LIG3-205ENST00000585941 PDE12Q6L8Q7 609 aaKnown RBP14.26□□□□□ -0.13
LIG3-205ENST00000585941 NCEH1Q6PIU2 408 aa14.26□□□□□ -0.13
LIG3-205ENST00000585941 ELMSAN1Q6PJG2 1045 aa14.26□□□□□ -0.13
LIG3-205ENST00000585941 SDCCAG8Q86SQ7 713 aaPredicted RBP14.26□□□□□ -0.13
LIG3-205ENST00000585941 C10orf107Q8IVU9 208 aa14.26□□□□□ -0.13
LIG3-205ENST00000585941 WDR75Q8IWA0 830 aaKnown RBP14.26□□□□□ -0.13
LIG3-205ENST00000585941 BBS7Q8IWZ6 715 aa14.26□□□□□ -0.13
LIG3-205ENST00000585941 PLD6Q8N2A8 252 aaKnown RBP14.26□□□□□ -0.13
LIG3-205ENST00000585941 MICALL1Q8N3F8 863 aa14.26□□□□□ -0.13
LIG3-205ENST00000585941 RFWD2Q8NHY2 731 aa14.26□□□□□ -0.13
LIG3-205ENST00000585941 TUBB6Q9BUF5 446 aa14.26□□□□□ -0.13
LIG3-205ENST00000585941 C1QTNF1Q9BXJ1 281 aa14.26□□□□□ -0.13
LIG3-205ENST00000585941 SLC46A2Q9BY10 475 aa14.26□□□□□ -0.13
LIG3-205ENST00000585941 STN1Q9H668 368 aaKnown RBP14.26□□□□□ -0.13
LIG3-205ENST00000585941 TASP1Q9H6P5 420 aa14.26□□□□□ -0.13
LIG3-205ENST00000585941 NLE1Q9NVX2 485 aaPredicted RBP14.26□□□□□ -0.13
LIG3-205ENST00000585941 LHX3Q9UBR4 397 aa14.26□□□□□ -0.13
LIG3-205ENST00000585941 DCTN4Q9UJW0 460 aa14.26□□□□□ -0.13
LIG3-205ENST00000585941 CHKBQ9Y259 395 aa14.26□□□□□ -0.13
LIG3-205ENST00000585941 ACTL7AQ9Y615 435 aa14.26□□□□□ -0.13
LIG3-205ENST00000585941 TMEM114B3SHH9 223 aa14.25□□□□□ -0.13
LIG3-205ENST00000585941 SNAP91O60641 907 aa14.25□□□□□ -0.13
LIG3-205ENST00000585941 DNAJC6O75061 913 aa14.25□□□□□ -0.13
LIG3-205ENST00000585941 XYLBO75191 536 aa14.25□□□□□ -0.13
LIG3-205ENST00000585941 GJB3O75712 270 aa14.25□□□□□ -0.13
LIG3-205ENST00000585941 KLHL2O95198 593 aa14.25□□□□□ -0.13
LIG3-205ENST00000585941 HSPA1AP0DMV8 641 aaKnown RBP14.25□□□□□ -0.13
LIG3-205ENST00000585941 HSPA1BP0DMV9 641 aaKnown RBP14.25□□□□□ -0.13
LIG3-205ENST00000585941 MYL2P10916 166 aa14.25□□□□□ -0.13
LIG3-205ENST00000585941 SAT1P21673 171 aa14.25□□□□□ -0.13
LIG3-205ENST00000585941 KCNA4P22459 653 aa14.25□□□□□ -0.13
LIG3-205ENST00000585941 AVPR1AP37288 418 aa14.25□□□□□ -0.13
LIG3-205ENST00000585941 SLC1A6P48664 564 aa14.25□□□□□ -0.13
LIG3-205ENST00000585941 PLK1P53350 603 aa14.25□□□□□ -0.13
LIG3-205ENST00000585941 GPR158Q5T848 1215 aa14.25□□□□□ -0.13
LIG3-205ENST00000585941 PTAR1Q7Z6K3 402 aaPredicted RBP14.25□□□□□ -0.13
LIG3-205ENST00000585941 TBC1D1Q86TI0 1168 aaPredicted RBP14.25□□□□□ -0.13
LIG3-205ENST00000585941 C7orf61Q8IZ16 206 aa14.25□□□□□ -0.13
LIG3-205ENST00000585941 GPATCH11Q8N954 259 aa14.25□□□□□ -0.13
LIG3-205ENST00000585941 ACVR1CQ8NER5 493 aa14.25□□□□□ -0.13
LIG3-205ENST00000585941 TTC8Q8TAM2 541 aa14.25□□□□□ -0.13
LIG3-205ENST00000585941 MICAL1Q8TDZ2 1067 aa14.25□□□□□ -0.13
LIG3-205ENST00000585941 SLC22A17Q8WUG5 538 aa14.25□□□□□ -0.13
LIG3-205ENST00000585941 ERP27Q96DN0 273 aa14.25□□□□□ -0.13
LIG3-205ENST00000585941 TMEM120AQ9BXJ8 343 aa14.25□□□□□ -0.13
LIG3-205ENST00000585941 WWP1Q9H0M0 922 aa14.25□□□□□ -0.13
LIG3-205ENST00000585941 SAR1AQ9NR31 198 aa14.25□□□□□ -0.13
LIG3-205ENST00000585941 FBXO6Q9NRD1 293 aaPredicted RBP14.25□□□□□ -0.13
LIG3-205ENST00000585941 ARL5AQ9Y689 179 aa14.25□□□□□ -0.13
LIG3-205ENST00000585941 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP14.24□□□□□ -0.13
LIG3-205ENST00000585941 LCHNA4D1U4 455 aa14.24□□□□□ -0.13
LIG3-205ENST00000585941 LINC01553A4QN01 128 aa14.24□□□□□ -0.13
LIG3-205ENST00000585941 ANKRD66B4E2M5 251 aa14.24□□□□□ -0.13
LIG3-205ENST00000585941 CD3EAPO15446 510 aaKnown RBP14.24□□□□□ -0.13
LIG3-205ENST00000585941 PHGDHO43175 533 aaKnown RBP14.24□□□□□ -0.13
LIG3-205ENST00000585941 HNRNPCL1O60812 293 aaKnown RBP14.24□□□□□ -0.13
LIG3-205ENST00000585941 TRIM13O60858 407 aa14.24□□□□□ -0.13
LIG3-205ENST00000585941 S1PR4O95977 384 aa14.24□□□□□ -0.13
LIG3-205ENST00000585941 PRLP01236 227 aa14.24□□□□□ -0.13
LIG3-205ENST00000585941 POU2F2P09086 479 aa14.24□□□□□ -0.13
LIG3-205ENST00000585941 ARSDP51689 593 aa14.24□□□□□ -0.13
LIG3-205ENST00000585941 ZNF140P52738 457 aaPredicted RBP14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms