RNA–Protein interactions for RNA: ENST00000585121.5

SS18-225, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-225ENST00000585121 RHOT2Q8IXI1 618 aa12.47□□□□□ -0.41
SS18-225ENST00000585121 TP53I13Q8NBR0 393 aaPredicted RBP12.47□□□□□ -0.41
SS18-225ENST00000585121 ATL2Q8NHH9 583 aa12.47□□□□□ -0.41
SS18-225ENST00000585121 FAM71BQ8TC56 605 aa12.47□□□□□ -0.41
SS18-225ENST00000585121 NUDCD1Q96RS6 583 aa12.47□□□□□ -0.41
SS18-225ENST00000585121 ZNF670Q9BS34 389 aa12.47□□□□□ -0.41
SS18-225ENST00000585121 PACSIN1Q9BY11 444 aa12.47□□□□□ -0.41
SS18-225ENST00000585121 TRIM5Q9C035 493 aa12.47□□□□□ -0.41
SS18-225ENST00000585121 CCDC86Q9H6F5 360 aaKnown RBP12.47□□□□□ -0.41
SS18-225ENST00000585121 USP29Q9HBJ7 922 aa12.47□□□□□ -0.41
SS18-225ENST00000585121 UCKL1Q9NWZ5 548 aa12.47□□□□□ -0.41
SS18-225ENST00000585121 SPASTQ9UBP0 616 aa12.47□□□□□ -0.41
SS18-225ENST00000585121 COQ6Q9Y2Z9 468 aa12.47□□□□□ -0.41
SS18-225ENST00000585121 CSNK1G3Q9Y6M4 447 aa12.47□□□□□ -0.41
SS18-225ENST00000585121 USP24Q9UPU5 2620 aa12.46□□□□□ -0.41
SS18-225ENST00000585121 DOCK9Q9BZ29 2069 aa12.46□□□□□ -0.42
SS18-225ENST00000585121 MUSKO15146 869 aa12.46□□□□□ -0.42
SS18-225ENST00000585121 AQP9O43315 295 aa12.46□□□□□ -0.42
SS18-225ENST00000585121 SOCS5O75159 536 aa12.46□□□□□ -0.42
SS18-225ENST00000585121 ELFN1P0C7U0 828 aa12.46□□□□□ -0.42
SS18-225ENST00000585121 KRT10P13645 584 aa12.46□□□□□ -0.42
SS18-225ENST00000585121 ACP1P24666 158 aa12.46□□□□□ -0.42
SS18-225ENST00000585121 HTR1BP28222 390 aa12.46□□□□□ -0.42
SS18-225ENST00000585121 IGFALSP35858 605 aa12.46□□□□□ -0.42
SS18-225ENST00000585121 ARHGAP25P42331 645 aa12.46□□□□□ -0.42
SS18-225ENST00000585121 MMP13P45452 471 aa12.46□□□□□ -0.42
SS18-225ENST00000585121 PEX5P50542 639 aa12.46□□□□□ -0.42
SS18-225ENST00000585121 BLKP51451 505 aa12.46□□□□□ -0.42
SS18-225ENST00000585121 E2F1Q01094 437 aa12.46□□□□□ -0.42
SS18-225ENST00000585121 ITKQ08881 620 aa12.46□□□□□ -0.42
SS18-225ENST00000585121 MMRN1Q13201 1228 aa12.46□□□□□ -0.42
SS18-225ENST00000585121 DPYSL3Q14195 570 aa12.46□□□□□ -0.42
SS18-225ENST00000585121 MESDQ14696 234 aa12.46□□□□□ -0.42
SS18-225ENST00000585121 IRF4Q15306 451 aa12.46□□□□□ -0.42
SS18-225ENST00000585121 PROX2Q3B8N5 592 aa12.46□□□□□ -0.42
SS18-225ENST00000585121 ODF2Q5BJF6 829 aa12.46□□□□□ -0.42
SS18-225ENST00000585121 ANKRD20A8PQ5CZ79 823 aa12.46□□□□□ -0.42
SS18-225ENST00000585121 FAXCQ5TGI0 409 aa12.46□□□□□ -0.42
SS18-225ENST00000585121 TIGD7Q6NT04 549 aaPredicted RBP12.46□□□□□ -0.42
SS18-225ENST00000585121 SLC35G2Q8TBE7 412 aa12.46□□□□□ -0.42
SS18-225ENST00000585121 LMX1AQ8TE12 382 aa12.46□□□□□ -0.42
SS18-225ENST00000585121 PDCD6IPQ8WUM4 868 aaKnown RBP12.46□□□□□ -0.42
SS18-225ENST00000585121 GLMNQ92990 594 aa12.46□□□□□ -0.42
SS18-225ENST00000585121 ECHDC3Q96DC8 303 aa12.46□□□□□ -0.42
SS18-225ENST00000585121 CHP1Q99653 195 aa12.46□□□□□ -0.42
SS18-225ENST00000585121 IL12RB2Q99665 862 aa12.46□□□□□ -0.42
SS18-225ENST00000585121 SLC13A1Q9BZW2 595 aa12.46□□□□□ -0.42
SS18-225ENST00000585121 MBNL1Q9NR56 388 aaKnown RBP12.46□□□□□ -0.42
SS18-225ENST00000585121 NCKIPSDQ9NZQ3 722 aa12.46□□□□□ -0.42
SS18-225ENST00000585121 AKAP13Q12802 2813 aa12.45□□□□□ -0.42
SS18-225ENST00000585121 ASPMQ8IZT6 3477 aa12.45□□□□□ -0.42
SS18-225ENST00000585121 TRAFD1O14545 582 aaPredicted RBP12.45□□□□□ -0.42
SS18-225ENST00000585121 PRKCGP05129 697 aa12.45□□□□□ -0.42
SS18-225ENST00000585121 CD48P09326 243 aa12.45□□□□□ -0.42
SS18-225ENST00000585121 MX2P20592 715 aa12.45□□□□□ -0.42
SS18-225ENST00000585121 IL4RP24394 825 aa12.45□□□□□ -0.42
SS18-225ENST00000585121 ARSEP51690 589 aa12.45□□□□□ -0.42
SS18-225ENST00000585121 PPARDQ03181 441 aa12.45□□□□□ -0.42
SS18-225ENST00000585121 PAFAH1B3Q15102 231 aaKnown RBP12.45□□□□□ -0.42
SS18-225ENST00000585121 IFI16Q16666 785 aaKnown RBP12.45□□□□□ -0.42
SS18-225ENST00000585121 WSCD2Q2TBF2 565 aa12.45□□□□□ -0.42
SS18-225ENST00000585121 ATP13A4Q4VNC1 1196 aa12.45□□□□□ -0.42
SS18-225ENST00000585121 MACC1Q6ZN28 852 aa12.45□□□□□ -0.42
SS18-225ENST00000585121 PHACTR4Q8IZ21 702 aa12.45□□□□□ -0.42
SS18-225ENST00000585121 NDUFAF2Q8N183 169 aa12.45□□□□□ -0.42
SS18-225ENST00000585121 PDCD7Q8N8D1 485 aaKnown RBP12.45□□□□□ -0.42
SS18-225ENST00000585121 ZNF548Q8NEK5 533 aaPredicted RBP12.45□□□□□ -0.42
SS18-225ENST00000585121 ZNF830Q96NB3 372 aaPredicted RBP12.45□□□□□ -0.42
SS18-225ENST00000585121 MGME1Q9BQP7 344 aa12.45□□□□□ -0.42
SS18-225ENST00000585121 MAK16Q9BXY0 300 aaKnown RBP12.45□□□□□ -0.42
SS18-225ENST00000585121 NT5MQ9NPB1 228 aa12.45□□□□□ -0.42
SS18-225ENST00000585121 SPTLC3Q9NUV7 552 aa12.45□□□□□ -0.42
SS18-225ENST00000585121 KCTD5Q9NXV2 234 aa12.45□□□□□ -0.42
SS18-225ENST00000585121 APOBEC3BQ9UH17 382 aaKnown RBP12.45□□□□□ -0.42
SS18-225ENST00000585121 PHTF1Q9UMS5 762 aa12.45□□□□□ -0.42
SS18-225ENST00000585121 PCDHGC4Q9Y5F7 938 aa12.45□□□□□ -0.42
SS18-225ENST00000585121 COL5A1P20908 1838 aaPredicted RBP12.45□□□□□ -0.42
SS18-225ENST00000585121 KNTC1P50748 2209 aa12.45□□□□□ -0.42
SS18-225ENST00000585121 GOLGA4Q13439 2230 aaKnown RBP12.45□□□□□ -0.42
SS18-225ENST00000585121 FAM149AA5PLN7 773 aa12.44□□□□□ -0.42
SS18-225ENST00000585121 K7ESM1 405 aa12.44□□□□□ -0.42
SS18-225ENST00000585121 PEX11BO96011 259 aa12.44□□□□□ -0.42
SS18-225ENST00000585121 CPP00450 1065 aa12.44□□□□□ -0.42
SS18-225ENST00000585121 PCCBP05166 539 aa12.44□□□□□ -0.42
SS18-225ENST00000585121 CYP2A6P11509 494 aaPredicted RBP12.44□□□□□ -0.42
SS18-225ENST00000585121 CKMT1AP12532 417 aa12.44□□□□□ -0.42
SS18-225ENST00000585121 CES1P23141 567 aa12.44□□□□□ -0.42
SS18-225ENST00000585121 GARSP41250 739 aaKnown RBP12.44□□□□□ -0.42
SS18-225ENST00000585121 RPIAP49247 311 aa12.44□□□□□ -0.42
SS18-225ENST00000585121 TAS2R40P59535 323 aa12.44□□□□□ -0.42
SS18-225ENST00000585121 EIF2B5Q13144 721 aaKnown RBP12.44□□□□□ -0.42
SS18-225ENST00000585121 MTM1Q13496 603 aa12.44□□□□□ -0.42
SS18-225ENST00000585121 INPP5AQ14642 412 aa12.44□□□□□ -0.42
SS18-225ENST00000585121 ACOX1Q15067 660 aa12.44□□□□□ -0.42
SS18-225ENST00000585121 AGERQ15109 404 aa12.44□□□□□ -0.42
SS18-225ENST00000585121 NCBP2-AS2Q69YL0 99 aa12.44□□□□□ -0.42
SS18-225ENST00000585121 ZCCHC8Q6NZY4 707 aaKnown RBP12.44□□□□□ -0.42
SS18-225ENST00000585121 SARM1Q6SZW1 724 aa12.44□□□□□ -0.42
SS18-225ENST00000585121 LIPIQ6XZB0 460 aa12.44□□□□□ -0.42
SS18-225ENST00000585121 DPPA4Q7L190 304 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms