RNA–Protein interactions for RNA: ENST00000584083.5

SS18-224, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 663 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-224ENST00000584083 MMP12P39900 470 aa20.56■□□□□ 0.88
SS18-224ENST00000584083 GARSP41250 739 aaKnown RBP20.56■□□□□ 0.88
SS18-224ENST00000584083 HNRNPKP61978 463 aaKnown RBP eCLIP20.56■□□□□ 0.88
SS18-224ENST00000584083 DNAJC3Q13217 504 aa20.56■□□□□ 0.88
SS18-224ENST00000584083 LRRC14Q15048 493 aa20.56■□□□□ 0.88
SS18-224ENST00000584083 HS1BP3Q53T59 392 aa20.56■□□□□ 0.88
SS18-224ENST00000584083 ODF2Q5BJF6 829 aa20.56■□□□□ 0.88
SS18-224ENST00000584083 UNQ6494/PRO21346Q6UXR6 183 aa20.56■□□□□ 0.88
SS18-224ENST00000584083 PARGQ86W56 976 aa20.56■□□□□ 0.88
SS18-224ENST00000584083 SLC25A45Q8N413 288 aa20.56■□□□□ 0.88
SS18-224ENST00000584083 TP53I13Q8NBR0 393 aaPredicted RBP20.56■□□□□ 0.88
SS18-224ENST00000584083 MGME1Q9BQP7 344 aa20.56■□□□□ 0.88
SS18-224ENST00000584083 CAAP1Q9H8G2 361 aa20.56■□□□□ 0.88
SS18-224ENST00000584083 MBNL1Q9NR56 388 aaKnown RBP20.56■□□□□ 0.88
SS18-224ENST00000584083 H3BM21 787 aa20.55■□□□□ 0.88
SS18-224ENST00000584083 TRAFD1O14545 582 aaPredicted RBP20.55■□□□□ 0.88
SS18-224ENST00000584083 SOCS5O75159 536 aa20.55■□□□□ 0.88
SS18-224ENST00000584083 TNNT1P13805 278 aa20.55■□□□□ 0.88
SS18-224ENST00000584083 CR2P20023 1033 aa20.55■□□□□ 0.88
SS18-224ENST00000584083 NOP2P46087 812 aaKnown RBP20.55■□□□□ 0.88
SS18-224ENST00000584083 ITKQ08881 620 aa20.55■□□□□ 0.88
SS18-224ENST00000584083 PTK2BQ14289 1009 aa20.55■□□□□ 0.88
SS18-224ENST00000584083 IRF4Q15306 451 aa20.55■□□□□ 0.88
SS18-224ENST00000584083 IFI16Q16666 785 aaKnown RBP20.55■□□□□ 0.88
SS18-224ENST00000584083 TIGD7Q6NT04 549 aaPredicted RBP20.55■□□□□ 0.88
SS18-224ENST00000584083 PQLC3Q8N755 202 aa20.55■□□□□ 0.88
SS18-224ENST00000584083 FAF2Q96CS3 445 aa20.55■□□□□ 0.88
SS18-224ENST00000584083 MRFAP1L1Q96HT8 127 aa20.55■□□□□ 0.88
SS18-224ENST00000584083 RNF157Q96PX1 679 aa20.55■□□□□ 0.88
SS18-224ENST00000584083 GOLGA4Q13439 2230 aaKnown RBP20.54■□□□□ 0.88
SS18-224ENST00000584083 A0A1W2PQ67 120 aa20.54■□□□□ 0.88
SS18-224ENST00000584083 A8MX80 341 aa20.54■□□□□ 0.88
SS18-224ENST00000584083 TRIM38O00635 465 aa20.54■□□□□ 0.88
SS18-224ENST00000584083 SIGLEC6O43699 453 aa20.54■□□□□ 0.88
SS18-224ENST00000584083 NEBLO76041 1014 aa20.54■□□□□ 0.88
SS18-224ENST00000584083 DKK1O94907 266 aa20.54■□□□□ 0.88
SS18-224ENST00000584083 CSF2P04141 144 aa20.54■□□□□ 0.88
SS18-224ENST00000584083 MX2P20592 715 aa20.54■□□□□ 0.88
SS18-224ENST00000584083 YPEL5P62699 121 aa20.54■□□□□ 0.88
SS18-224ENST00000584083 GBE1Q04446 702 aa20.54■□□□□ 0.88
SS18-224ENST00000584083 SPA17Q15506 151 aa20.54■□□□□ 0.88
SS18-224ENST00000584083 ST3GAL2Q16842 350 aa20.54■□□□□ 0.88
SS18-224ENST00000584083 WSCD2Q2TBF2 565 aa20.54■□□□□ 0.88
SS18-224ENST00000584083 TPRG1LQ5T0D9 272 aa20.54■□□□□ 0.88
SS18-224ENST00000584083 DHRS13Q6UX07 377 aa20.54■□□□□ 0.88
SS18-224ENST00000584083 TEX26Q8N6G2 289 aa20.54■□□□□ 0.88
SS18-224ENST00000584083 TRAF3IP1Q8TDR0 691 aaPredicted RBP20.54■□□□□ 0.88
SS18-224ENST00000584083 MAK16Q9BXY0 300 aaKnown RBP20.54■□□□□ 0.88
SS18-224ENST00000584083 HYOU1Q9Y4L1 999 aa20.54■□□□□ 0.88
SS18-224ENST00000584083 PLXNB3Q9ULL4 1909 aa20.54■□□□□ 0.88
SS18-224ENST00000584083 FAM221BA6H8Z2 402 aa20.53■□□□□ 0.88
SS18-224ENST00000584083 NEMP2A6NFY4 417 aa20.53■□□□□ 0.88
SS18-224ENST00000584083 TOR1BO14657 336 aa20.53■□□□□ 0.88
SS18-224ENST00000584083 MATN3O15232 486 aa20.53■□□□□ 0.88
SS18-224ENST00000584083 HTRA2O43464 458 aaPredicted RBP20.53■□□□□ 0.88
SS18-224ENST00000584083 SPOPO43791 374 aa20.53■□□□□ 0.88
SS18-224ENST00000584083 CPP00450 1065 aa20.53■□□□□ 0.88
SS18-224ENST00000584083 KRT1P04264 644 aa20.53■□□□□ 0.88
SS18-224ENST00000584083 PROS1P07225 676 aa20.53■□□□□ 0.88
SS18-224ENST00000584083 ELFN1P0C7U0 828 aa20.53■□□□□ 0.88
SS18-224ENST00000584083 ALPPL2P10696 532 aa20.53■□□□□ 0.88
SS18-224ENST00000584083 NME1P15531 152 aaKnown RBP20.53■□□□□ 0.88
SS18-224ENST00000584083 JUNDP17535 347 aa20.53■□□□□ 0.88
SS18-224ENST00000584083 CCNCP24863 283 aa20.53■□□□□ 0.88
SS18-224ENST00000584083 CYLC1P35663 651 aaPredicted RBP20.53■□□□□ 0.88
SS18-224ENST00000584083 SLC1A1P43005 524 aa20.53■□□□□ 0.88
SS18-224ENST00000584083 RALGDSQ12967 914 aa20.53■□□□□ 0.88
SS18-224ENST00000584083 ZNF211Q13398 564 aaPredicted RBP20.53■□□□□ 0.88
SS18-224ENST00000584083 TCEAL1Q15170 157 aa20.53■□□□□ 0.88
SS18-224ENST00000584083 RALGPS1Q5JS13 557 aa20.53■□□□□ 0.88
SS18-224ENST00000584083 LIPIQ6XZB0 460 aa20.53■□□□□ 0.88
SS18-224ENST00000584083 DPPA4Q7L190 304 aa20.53■□□□□ 0.88
SS18-224ENST00000584083 RHOT1Q8IXI2 618 aa20.53■□□□□ 0.88
SS18-224ENST00000584083 CCDC170Q8IYT3 715 aa20.53■□□□□ 0.88
SS18-224ENST00000584083 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP20.53■□□□□ 0.88
SS18-224ENST00000584083 CCNYQ8ND76 341 aa20.53■□□□□ 0.88
SS18-224ENST00000584083 OR4C6Q8NH72 309 aa20.53■□□□□ 0.88
SS18-224ENST00000584083 GATA6Q92908 595 aa20.53■□□□□ 0.88
SS18-224ENST00000584083 ZNF830Q96NB3 372 aaPredicted RBP20.53■□□□□ 0.88
SS18-224ENST00000584083 TSGA13Q96PP4 275 aa20.53■□□□□ 0.88
SS18-224ENST00000584083 SEMA3CQ99985 751 aa20.53■□□□□ 0.88
SS18-224ENST00000584083 LUC7LQ9NQ29 371 aaKnown RBP20.53■□□□□ 0.88
SS18-224ENST00000584083 HAUS2Q9NVX0 235 aa20.53■□□□□ 0.88
SS18-224ENST00000584083 TTLL3Q9Y4R7 772 aa20.53■□□□□ 0.88
SS18-224ENST00000584083 PCDHGA1Q9Y5H4 931 aa20.53■□□□□ 0.88
SS18-224ENST00000584083 AKAP13Q12802 2813 aa20.52■□□□□ 0.88
SS18-224ENST00000584083 CFAP69A5D8W1 941 aa20.52■□□□□ 0.88
SS18-224ENST00000584083 RFPL3O75679 317 aa20.52■□□□□ 0.88
SS18-224ENST00000584083 CKMT2P17540 419 aa20.52■□□□□ 0.88
SS18-224ENST00000584083 COMTP21964 271 aa20.52■□□□□ 0.88
SS18-224ENST00000584083 NFKBIAP25963 317 aa20.52■□□□□ 0.88
SS18-224ENST00000584083 ACADVLP49748 655 aa20.52■□□□□ 0.88
SS18-224ENST00000584083 DAB2P98082 770 aa20.52■□□□□ 0.88
SS18-224ENST00000584083 SLC10A2Q12908 348 aaPredicted RBP20.52■□□□□ 0.88
SS18-224ENST00000584083 TRAF2Q12933 501 aa20.52■□□□□ 0.88
SS18-224ENST00000584083 EIF2B5Q13144 721 aaKnown RBP20.52■□□□□ 0.88
SS18-224ENST00000584083 LRRC38Q5VT99 294 aa20.52■□□□□ 0.88
SS18-224ENST00000584083 TMPRSS7Q7RTY8 843 aa20.52■□□□□ 0.88
SS18-224ENST00000584083 GAS2L3Q86XJ1 694 aa20.52■□□□□ 0.88
SS18-224ENST00000584083 GALNT15Q8N3T1 639 aa20.52■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms