RNA–Protein interactions for RNA: ENST00000584063.5

CDK5RAP3-231, Transcript of CDK5 regulatory subunit associated protein 3, human

TSL 1 (best)

Gene CDK5RAP3, Length 2,759 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK5RAP3-231	ENST00000584063	CNPY1	Q3B7I2	92 aa		11.7	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	STXBP5	Q5T5C0	1151 aa		11.7	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	HEATR6	Q6AI08	1181 aa	Known RBP	11.7	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	NET1	Q7Z628	596 aa	Predicted RBP	11.7	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	MAPK15	Q8TD08	544 aa		11.7	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	RNF139	Q8WU17	664 aa		11.7	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	RADIL	Q96JH8	1075 aa		11.7	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	WDR6	Q9NNW5	1121 aa	Known RBP	11.7	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	ANLN	Q9NQW6	1124 aa		11.7	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	SYBU	Q9NX95	663 aa		11.7	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	FETUB	Q9UGM5	382 aa		11.7	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	SH3GLB1	Q9Y371	365 aa		11.7	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	KIAA0100	Q14667	2235 aa	Known RBP	11.7	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	CASTOR2	A6NHX0	329 aa		11.7	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	FAM72C	H0Y354	149 aa		11.7	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	STX16-NPEPL1	H3BU86	382 aa		11.7	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	GREM1	O60565	184 aa		11.7	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	POMC	P01189	267 aa		11.7	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	ATP6V1B1	P15313	513 aa		11.7	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	PRKCH	P24723	683 aa		11.7	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	PSMB4	P28070	264 aa		11.7	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	AVPR1A	P37288	418 aa		11.7	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	IDH3A	P50213	366 aa		11.7	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	IL1RL1	Q01638	556 aa		11.7	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	NME3	Q13232	169 aa		11.7	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	E2F2	Q14209	437 aa		11.7	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	PCLAF	Q15004	111 aa		11.7	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	KYAT1	Q16773	422 aa		11.7	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	PABPC1L	Q4VXU2	614 aa	Known RBP	11.7	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	SLC9B1	Q4ZJI4	515 aa		11.7	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	EFHC1	Q5JVL4	640 aa		11.7	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	FBXO47	Q5MNV8	452 aa		11.7	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	FAM72A	Q5TYM5	149 aa		11.7	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	SYPL2	Q5VXT5	272 aa		11.7	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	MBLAC2	Q68D91	279 aa		11.7	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	PDPK2P	Q6A1A2	396 aa		11.7	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	FAM72D	Q6L9T8	149 aa		11.7	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	NAPRT	Q6XQN6	538 aa		11.7	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	FAM72B	Q86X60	149 aa		11.7	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	DEFB106A	Q8N104	65 aa		11.7	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	LSMEM2	Q8N112	164 aa		11.7	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	ZNF781	Q8N8C0	355 aa		11.7	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	COLGALT1	Q8NBJ5	622 aa		11.7	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	ZNF784	Q8NCA9	323 aa	Predicted RBP	11.7	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	IFT43	Q96FT9	208 aa		11.7	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	CCDC177	Q9NQR7	707 aa	Predicted RBP	11.7	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	C8orf4	Q9NR00	106 aa		11.7	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	SDHAF3	Q9NRP4	125 aa		11.7	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	THAP1	Q9NVV9	213 aa		11.7	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	ARHGEF38	Q9NXL2	777 aa		11.7	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	RNF112	Q9ULX5	631 aa		11.7	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063		Q9Y3F1	56 aa		11.7	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	SNPH	O15079	494 aa		11.69	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	MAGEC1	O60732	1142 aa		11.69	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	SNN	O75324	88 aa	Predicted RBP	11.69	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	SERPINA6	P08185	405 aa		11.69	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	PSMA4	P25789	261 aa	Known RBP	11.69	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	ADIG	Q0VDE8	80 aa		11.69	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	TUBB3	Q13509	450 aa		11.69	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	STIL	Q15468	1287 aa		11.69	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	TRMT5	Q32P41	509 aa	Known RBP	11.69	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	UBXN11	Q5T124	520 aa		11.69	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	OTUD1	Q5VV17	481 aa	Predicted RBP	11.69	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	C9orf57	Q5W0N0	161 aa		11.69	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	TMEM198	Q66K66	360 aa		11.69	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	SMG8	Q8ND04	991 aa	Known RBP	11.69	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	OR6Y1	Q8NGX8	325 aa		11.69	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	OSCP1	Q8WVF1	389 aa		11.69	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	TFB1M	Q8WVM0	346 aa	Known RBP	11.69	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	ANKRD27	Q96NW4	1050 aa		11.69	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	PHF12	Q96QT6	1004 aa		11.69	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	S100A14	Q9HCY8	104 aa		11.69	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	SRRD	Q9UH36	339 aa		11.69	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	ZNF638	Q14966	1978 aa	Known RBP	11.69	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	KPNA7	A9QM74	516 aa		11.69	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063		I6L893	689 aa	Predicted RBP	11.69	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	BUD23	O43709	281 aa	Known RBP	11.69	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	LTF	P02788	710 aa		11.69	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	CHRNG	P07510	517 aa		11.69	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	MAN2A2	P49641	1150 aa		11.69	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	VEGFB	P49765	207 aa		11.69	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	SULT1E1	P49888	294 aa		11.69	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	CCR3	P51677	355 aa		11.69	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	ARFIP1	P53367	373 aa		11.69	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	POLR2G	P62487	172 aa	Known RBP eCLIP	11.69	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	TBL3	Q12788	808 aa	Known RBP	11.69	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	MMEL1	Q495T6	779 aa		11.69	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	DCAF6	Q58WW2	860 aa		11.69	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	MZT2B	Q6NZ67	158 aa		11.69	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	KDELC2	Q7Z4H8	507 aa		11.69	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	GALNT4	Q8N4A0	578 aa		11.69	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	PIP4K2C	Q8TBX8	421 aa		11.69	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	PEX13	Q92968	403 aa		11.69	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	OR52B2	Q96RD2	323 aa		11.69	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	SORT1	Q99523	831 aa		11.69	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	RHOBTB2	Q9BYZ6	727 aa		11.69	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	CEP44	Q9C0F1	390 aa		11.69	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	TGIF2	Q9GZN2	237 aa		11.69	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	IGF2BP1	Q9NZI8	577 aa	Known RBP eCLIP	11.69	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	EMC3	Q9P0I2	261 aa		11.69	□□□□□ -0.54

Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms