RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 POLD3Q15054 466 aaPredicted RBP10.14□□□□□ -0.79
VPS53-220ENST00000576149 SKIV2LQ15477 1246 aaKnown RBP10.14□□□□□ -0.79
VPS53-220ENST00000576149 PARP15Q460N3 678 aa10.14□□□□□ -0.79
VPS53-220ENST00000576149 PPM1LQ5SGD2 360 aa10.14□□□□□ -0.79
VPS53-220ENST00000576149 C10orf120Q5SQS8 335 aa10.14□□□□□ -0.79
VPS53-220ENST00000576149 ACBD5Q5T8D3 534 aaPredicted RBP10.14□□□□□ -0.79
VPS53-220ENST00000576149 SETD3Q86TU7 594 aaPredicted RBP10.14□□□□□ -0.79
VPS53-220ENST00000576149 ZNF354CQ86Y25 554 aa10.14□□□□□ -0.79
VPS53-220ENST00000576149 EFCAB3Q8N7B9 438 aa10.14□□□□□ -0.79
VPS53-220ENST00000576149 CCDC126Q96EE4 140 aa10.14□□□□□ -0.79
VPS53-220ENST00000576149 UBXN10Q96LJ8 280 aa10.14□□□□□ -0.79
VPS53-220ENST00000576149 MFSD1Q9H3U5 465 aa10.14□□□□□ -0.79
VPS53-220ENST00000576149 TMEM161AQ9NX61 479 aa10.14□□□□□ -0.79
VPS53-220ENST00000576149 UXTQ9UBK9 157 aaPredicted RBP10.14□□□□□ -0.79
VPS53-220ENST00000576149 PRPF19Q9UMS4 504 aaKnown RBP10.14□□□□□ -0.79
VPS53-220ENST00000576149 DOCK4Q8N1I0 1966 aa10.14□□□□□ -0.79
VPS53-220ENST00000576149 SLC12A8A0AV02 714 aa10.14□□□□□ -0.79
VPS53-220ENST00000576149 NEMP2A6NFY4 417 aa10.14□□□□□ -0.79
VPS53-220ENST00000576149 TMEM233B4DJY2 109 aa10.14□□□□□ -0.79
VPS53-220ENST00000576149 AIM2O14862 343 aa10.14□□□□□ -0.79
VPS53-220ENST00000576149 LDB2O43679 373 aa10.14□□□□□ -0.79
VPS53-220ENST00000576149 WISP3O95389 354 aaPredicted RBP10.14□□□□□ -0.79
VPS53-220ENST00000576149 LTA4HP09960 611 aaKnown RBP10.14□□□□□ -0.79
VPS53-220ENST00000576149 COL6A1P12109 1028 aa10.14□□□□□ -0.79
VPS53-220ENST00000576149 PBX3P40426 434 aa10.14□□□□□ -0.79
VPS53-220ENST00000576149 NUDT2P50583 147 aa10.14□□□□□ -0.79
VPS53-220ENST00000576149 ARSDP51689 593 aa10.14□□□□□ -0.79
VPS53-220ENST00000576149 DSG1Q02413 1049 aa10.14□□□□□ -0.79
VPS53-220ENST00000576149 RING1Q06587 406 aa10.14□□□□□ -0.79
VPS53-220ENST00000576149 CYLC2Q14093 348 aaPredicted RBP10.14□□□□□ -0.79
VPS53-220ENST00000576149 LBRQ14739 615 aaKnown RBP10.14□□□□□ -0.79
VPS53-220ENST00000576149 ACAP2Q15057 778 aa10.14□□□□□ -0.79
VPS53-220ENST00000576149 PDCD2Q16342 344 aaPredicted RBP10.14□□□□□ -0.79
VPS53-220ENST00000576149 TCHHL1Q5QJ38 904 aaPredicted RBP10.14□□□□□ -0.79
VPS53-220ENST00000576149 SH2D4BQ5SQS7 431 aa10.14□□□□□ -0.79
VPS53-220ENST00000576149 HECTD2Q5U5R9 776 aa10.14□□□□□ -0.79
VPS53-220ENST00000576149 TMEM198Q66K66 360 aa10.14□□□□□ -0.79
VPS53-220ENST00000576149 NXNQ6DKJ4 435 aa10.14□□□□□ -0.79
VPS53-220ENST00000576149 C16orf89Q6UX73 402 aa10.14□□□□□ -0.79
VPS53-220ENST00000576149 IZUMO2Q6UXV1 221 aa10.14□□□□□ -0.79
VPS53-220ENST00000576149 RNF111Q6ZNA4 994 aa10.14□□□□□ -0.79
VPS53-220ENST00000576149 PTAR1Q7Z6K3 402 aaPredicted RBP10.14□□□□□ -0.79
VPS53-220ENST00000576149 DHDDSQ86SQ9 333 aa10.14□□□□□ -0.79
VPS53-220ENST00000576149 KYQ8NBH2 561 aa10.14□□□□□ -0.79
VPS53-220ENST00000576149 UCMAQ8WVF2 138 aa10.14□□□□□ -0.79
VPS53-220ENST00000576149 HDAC10Q969S8 669 aa10.14□□□□□ -0.79
VPS53-220ENST00000576149 B3GALT6Q96L58 329 aa10.14□□□□□ -0.79
VPS53-220ENST00000576149 RPRD1AQ96P16 312 aaPredicted RBP10.14□□□□□ -0.79
VPS53-220ENST00000576149 CATSPER2Q96P56 530 aa10.14□□□□□ -0.79
VPS53-220ENST00000576149 GPR62Q9BZJ7 368 aa10.14□□□□□ -0.79
VPS53-220ENST00000576149 CRISPLD1Q9H336 500 aa10.14□□□□□ -0.79
VPS53-220ENST00000576149 ZBTB26Q9HCK0 441 aa10.14□□□□□ -0.79
VPS53-220ENST00000576149 G3BP2Q9UN86 482 aaKnown RBP10.14□□□□□ -0.79
VPS53-220ENST00000576149 SLC27A5Q9Y2P5 690 aa10.14□□□□□ -0.79
VPS53-220ENST00000576149 VWA7Q9Y334 891 aa10.14□□□□□ -0.79
VPS53-220ENST00000576149 CASP8AP2Q9UKL3 1982 aa10.13□□□□□ -0.79
VPS53-220ENST00000576149 MTMR11A4FU01 709 aa10.13□□□□□ -0.79
VPS53-220ENST00000576149 MOXD2PA6NHM9 499 aa10.13□□□□□ -0.79
VPS53-220ENST00000576149 TRPC5OSA6NMA1 111 aa10.13□□□□□ -0.79
VPS53-220ENST00000576149 A8MT66 165 aa10.13□□□□□ -0.79
VPS53-220ENST00000576149 SDHDO14521 159 aa10.13□□□□□ -0.79
VPS53-220ENST00000576149 IPO13O94829 963 aaKnown RBP10.13□□□□□ -0.79
VPS53-220ENST00000576149 S1PR4O95977 384 aa10.13□□□□□ -0.79
VPS53-220ENST00000576149 ALDH1A1P00352 501 aa10.13□□□□□ -0.79
VPS53-220ENST00000576149 HMBSP08397 361 aa10.13□□□□□ -0.79
VPS53-220ENST00000576149 RBP1P09455 135 aa10.13□□□□□ -0.79
VPS53-220ENST00000576149 CCDC166P0CW27 439 aa10.13□□□□□ -0.79
VPS53-220ENST00000576149 KCNA5P22460 613 aa10.13□□□□□ -0.79
VPS53-220ENST00000576149 FGFR3P22607 806 aa10.13□□□□□ -0.79
VPS53-220ENST00000576149 ARPP19P56211 112 aa10.13□□□□□ -0.79
VPS53-220ENST00000576149 YBEYP58557 167 aaPredicted RBP10.13□□□□□ -0.79
VPS53-220ENST00000576149 GPR17Q13304 367 aa10.13□□□□□ -0.79
VPS53-220ENST00000576149 CAPRIN2Q6IMN6 1127 aaKnown RBP10.13□□□□□ -0.79
VPS53-220ENST00000576149 KLC3Q6P597 504 aa10.13□□□□□ -0.79
VPS53-220ENST00000576149 KBTBD6Q86V97 674 aa10.13□□□□□ -0.79
VPS53-220ENST00000576149 CIR1Q86X95 450 aaPredicted RBP10.13□□□□□ -0.79
VPS53-220ENST00000576149 RNF135Q8IUD6 432 aa10.13□□□□□ -0.79
VPS53-220ENST00000576149 SPNS2Q8IVW8 549 aa10.13□□□□□ -0.79
VPS53-220ENST00000576149 DSELQ8IZU8 1212 aa10.13□□□□□ -0.79
VPS53-220ENST00000576149 PNPLA1Q8N8W4 532 aa10.13□□□□□ -0.79
VPS53-220ENST00000576149 OR6P1Q8NGX9 317 aa10.13□□□□□ -0.79
VPS53-220ENST00000576149 SPPL2BQ8TCT7 592 aa10.13□□□□□ -0.79
VPS53-220ENST00000576149 SPATA17Q96L03 361 aa10.13□□□□□ -0.79
VPS53-220ENST00000576149 ECSITQ9BQ95 431 aa10.13□□□□□ -0.79
VPS53-220ENST00000576149 STK39Q9UEW8 545 aa10.13□□□□□ -0.79
VPS53-220ENST00000576149 CEP350Q5VT06 3117 aa10.13□□□□□ -0.79
VPS53-220ENST00000576149 DPPA5A6NC42 116 aa10.13□□□□□ -0.79
VPS53-220ENST00000576149 CCL22O00626 93 aa10.13□□□□□ -0.79
VPS53-220ENST00000576149 PRAMEF11O60813 436 aa10.13□□□□□ -0.79
VPS53-220ENST00000576149 VNN2O95498 520 aa10.13□□□□□ -0.79
VPS53-220ENST00000576149 ZDHHC11BP0C7U3 371 aa10.13□□□□□ -0.79
VPS53-220ENST00000576149 HNRNPLP14866 589 aaKnown RBP eCLIP10.13□□□□□ -0.79
VPS53-220ENST00000576149 TCF3P15923 654 aa10.13□□□□□ -0.79
VPS53-220ENST00000576149 OR1E1P30953 314 aa10.13□□□□□ -0.79
VPS53-220ENST00000576149 ACVRL1P37023 503 aa10.13□□□□□ -0.79
VPS53-220ENST00000576149 ETFBP38117 255 aa10.13□□□□□ -0.79
VPS53-220ENST00000576149 SLC26A3P40879 764 aa10.13□□□□□ -0.79
VPS53-220ENST00000576149 MAPKAPK2P49137 400 aa10.13□□□□□ -0.79
VPS53-220ENST00000576149 PRAMEP78395 509 aa10.13□□□□□ -0.79
VPS53-220ENST00000576149 ACVR1Q04771 509 aa10.13□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms