RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 NUDT5Q9UKK9 219 aa10.92□□□□□ -0.66
CLK3-226ENST00000569406 DICER1Q9UPY3 1922 aaKnown RBP10.92□□□□□ -0.66
CLK3-226ENST00000569406 CCDC195A0A1B0GUA6 201 aa10.91□□□□□ -0.66
CLK3-226ENST00000569406 PI4K2BG5E9Z4 385 aa10.91□□□□□ -0.66
CLK3-226ENST00000569406 TM9SF1O15321 606 aa10.91□□□□□ -0.66
CLK3-226ENST00000569406 ST8SIA5O15466 376 aa10.91□□□□□ -0.66
CLK3-226ENST00000569406 TYROBPO43914 113 aa10.91□□□□□ -0.66
CLK3-226ENST00000569406 SBF1O95248 1867 aa10.91□□□□□ -0.66
CLK3-226ENST00000569406 MATN1P21941 496 aa10.91□□□□□ -0.66
CLK3-226ENST00000569406 ABCE1P61221 599 aaKnown RBP10.91□□□□□ -0.66
CLK3-226ENST00000569406 PSMC5P62195 406 aa10.91□□□□□ -0.66
CLK3-226ENST00000569406 FMO1Q01740 532 aa10.91□□□□□ -0.66
CLK3-226ENST00000569406 CREB5Q02930 508 aa10.91□□□□□ -0.66
CLK3-226ENST00000569406 FAPQ12884 760 aa10.91□□□□□ -0.66
CLK3-226ENST00000569406 PTPRJQ12913 1337 aa10.91□□□□□ -0.66
CLK3-226ENST00000569406 DESI1Q6ICB0 168 aa10.91□□□□□ -0.66
CLK3-226ENST00000569406 DLK2Q6UY11 383 aa10.91□□□□□ -0.66
CLK3-226ENST00000569406 RNF207Q6ZRF8 634 aa10.91□□□□□ -0.66
CLK3-226ENST00000569406 STXBP4Q6ZWJ1 553 aa10.91□□□□□ -0.66
CLK3-226ENST00000569406 ZNF438Q7Z4V0 828 aa10.91□□□□□ -0.66
CLK3-226ENST00000569406 CCDC60Q8IWA6 550 aaPredicted RBP10.91□□□□□ -0.66
CLK3-226ENST00000569406 MICU2Q8IYU8 434 aa10.91□□□□□ -0.66
CLK3-226ENST00000569406 ARRDC4Q8NCT1 418 aa10.91□□□□□ -0.66
CLK3-226ENST00000569406 SHC3Q92529 594 aa10.91□□□□□ -0.66
CLK3-226ENST00000569406 C12orf42Q96LP6 360 aa10.91□□□□□ -0.66
CLK3-226ENST00000569406 AGPAT1Q99943 283 aa10.91□□□□□ -0.66
CLK3-226ENST00000569406 DIABLOQ9NR28 239 aa10.91□□□□□ -0.66
CLK3-226ENST00000569406 ITGA2P17301 1181 aa10.91□□□□□ -0.66
CLK3-226ENST00000569406 CCND2P30279 289 aa10.91□□□□□ -0.66
CLK3-226ENST00000569406 SOX9P48436 509 aa10.91□□□□□ -0.66
CLK3-226ENST00000569406 CLDN10P78369 228 aa10.91□□□□□ -0.66
CLK3-226ENST00000569406 ELOAQ14241 798 aaKnown RBP10.91□□□□□ -0.66
CLK3-226ENST00000569406 SIX1Q15475 284 aaPredicted RBP10.91□□□□□ -0.66
CLK3-226ENST00000569406 GEN1Q17RS7 908 aa10.91□□□□□ -0.66
CLK3-226ENST00000569406 ARCQ7LC44 396 aa10.91□□□□□ -0.66
CLK3-226ENST00000569406 CCDC36Q8IYA8 594 aa10.91□□□□□ -0.66
CLK3-226ENST00000569406 XXYLT1Q8NBI6 393 aa10.91□□□□□ -0.66
CLK3-226ENST00000569406 AFG1LQ8WV93 481 aa10.91□□□□□ -0.66
CLK3-226ENST00000569406 MFSD14AQ96MC6 490 aa10.91□□□□□ -0.66
CLK3-226ENST00000569406 SLC6A17Q9H1V8 727 aa10.91□□□□□ -0.66
CLK3-226ENST00000569406 SPC25Q9HBM1 224 aa10.91□□□□□ -0.66
CLK3-226ENST00000569406 SAYSD1Q9NPB0 183 aa10.91□□□□□ -0.66
CLK3-226ENST00000569406 PARVAQ9NVD7 372 aa10.91□□□□□ -0.66
CLK3-226ENST00000569406 CD274Q9NZQ7 290 aa10.91□□□□□ -0.66
CLK3-226ENST00000569406 MTRRQ9UBK8 725 aa10.91□□□□□ -0.66
CLK3-226ENST00000569406 SUCOQ9UBS9 1254 aaKnown RBP10.91□□□□□ -0.66
CLK3-226ENST00000569406 PSME2Q9UL46 239 aa10.91□□□□□ -0.66
CLK3-226ENST00000569406 RGS5O15539 181 aa10.91□□□□□ -0.66
CLK3-226ENST00000569406 SLITRK5O94991 958 aa10.91□□□□□ -0.66
CLK3-226ENST00000569406 KCNK2O95069 426 aa10.91□□□□□ -0.66
CLK3-226ENST00000569406 PROS1P07225 676 aa10.91□□□□□ -0.66
CLK3-226ENST00000569406 SELLP14151 372 aa10.91□□□□□ -0.66
CLK3-226ENST00000569406 HOXC13P31276 330 aa10.91□□□□□ -0.66
CLK3-226ENST00000569406 TALDO1P37837 337 aa10.91□□□□□ -0.66
CLK3-226ENST00000569406 PDIA2Q13087 525 aaKnown RBP10.91□□□□□ -0.66
CLK3-226ENST00000569406 ZNF568Q3ZCX4 644 aa10.91□□□□□ -0.66
CLK3-226ENST00000569406 C2CD6Q53TS8 623 aa10.91□□□□□ -0.66
CLK3-226ENST00000569406 FAM180BQ6P0A1 224 aa10.91□□□□□ -0.66
CLK3-226ENST00000569406 KRT77Q7Z794 578 aa10.91□□□□□ -0.66
CLK3-226ENST00000569406 CTAGE3PQ8IX95 158 aa10.91□□□□□ -0.66
CLK3-226ENST00000569406 LGI2Q8N0V4 545 aa10.91□□□□□ -0.66
CLK3-226ENST00000569406 TBC1D20Q96BZ9 403 aa10.91□□□□□ -0.66
CLK3-226ENST00000569406 FAM111AQ96PZ2 611 aa10.91□□□□□ -0.66
CLK3-226ENST00000569406 ACCSQ96QU6 501 aa10.91□□□□□ -0.66
CLK3-226ENST00000569406 GON7Q9BXV9 100 aa10.91□□□□□ -0.66
CLK3-226ENST00000569406 TINAGL1Q9GZM7 467 aaPredicted RBP10.91□□□□□ -0.66
CLK3-226ENST00000569406 SDHAF3Q9NRP4 125 aa10.91□□□□□ -0.66
CLK3-226ENST00000569406 ZNF224Q9NZL3 707 aa10.91□□□□□ -0.66
CLK3-226ENST00000569406 RIMS3Q9UJD0 308 aa10.91□□□□□ -0.66
CLK3-226ENST00000569406 SPATA2Q9UM82 520 aa10.91□□□□□ -0.66
CLK3-226ENST00000569406 SYNGAP1Q96PV0 1343 aa10.9□□□□□ -0.66
CLK3-226ENST00000569406 A0A1W2PRG6 482 aa10.9□□□□□ -0.66
CLK3-226ENST00000569406 PDHXO00330 501 aa10.9□□□□□ -0.66
CLK3-226ENST00000569406 PRKD3O94806 890 aa10.9□□□□□ -0.66
CLK3-226ENST00000569406 ITGB3P05106 788 aa10.9□□□□□ -0.66
CLK3-226ENST00000569406 STMN1P16949 149 aa10.9□□□□□ -0.66
CLK3-226ENST00000569406 KELP23276 732 aa10.9□□□□□ -0.66
CLK3-226ENST00000569406 SERPINB5P36952 375 aa10.9□□□□□ -0.66
CLK3-226ENST00000569406 GPX6P59796 221 aa10.9□□□□□ -0.66
CLK3-226ENST00000569406 TXNL4AP83876 142 aaKnown RBP10.9□□□□□ -0.66
CLK3-226ENST00000569406 SLC18A2Q05940 514 aa10.9□□□□□ -0.66
CLK3-226ENST00000569406 SNRNP35Q16560 246 aaKnown RBP10.9□□□□□ -0.66
CLK3-226ENST00000569406 CACHD1Q5VU97 1274 aa10.9□□□□□ -0.66
CLK3-226ENST00000569406 ABHD15Q6UXT9 468 aa10.9□□□□□ -0.66
CLK3-226ENST00000569406 SPATC1Q76KD6 591 aa10.9□□□□□ -0.66
CLK3-226ENST00000569406 SLCO6A1Q86UG4 719 aa10.9□□□□□ -0.66
CLK3-226ENST00000569406 ZBTB44Q8NCP5 570 aa10.9□□□□□ -0.66
CLK3-226ENST00000569406 TMEM80Q96HE8 168 aa10.9□□□□□ -0.66
CLK3-226ENST00000569406 KCNK16Q96T55 309 aa10.9□□□□□ -0.66
CLK3-226ENST00000569406 CNPY3Q9BT09 278 aa10.9□□□□□ -0.66
CLK3-226ENST00000569406 CCDC106Q9BWC9 280 aa10.9□□□□□ -0.66
CLK3-226ENST00000569406 ZNF395Q9H8N7 513 aaPredicted RBP10.9□□□□□ -0.66
CLK3-226ENST00000569406 MRM3Q9HC36 420 aaKnown RBP10.9□□□□□ -0.66
CLK3-226ENST00000569406 ANKEF1Q9NU02 776 aa10.9□□□□□ -0.66
CLK3-226ENST00000569406 GLTPQ9NZD2 209 aa10.9□□□□□ -0.66
CLK3-226ENST00000569406 PCDHGC3Q9UN70 934 aa10.9□□□□□ -0.66
CLK3-226ENST00000569406 ISPDA4D126 451 aa10.9□□□□□ -0.66
CLK3-226ENST00000569406 CFLARO15519 480 aa10.9□□□□□ -0.66
CLK3-226ENST00000569406 NR3C2P08235 984 aa10.9□□□□□ -0.66
CLK3-226ENST00000569406 MYCLP12524 364 aaPredicted RBP10.9□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 87.1 ms